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PDB: 1330 results

3EZK
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BU of 3ezk by Molmil
Bacteriophage T4 gp17 motor assembly based on crystal structures and cryo-EM reconstructions
Descriptor: DNA packaging protein Gp17
Authors:Sun, S, Rossmann, M.G.
Deposit date:2008-10-23
Release date:2009-01-13
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (34 Å)
Cite:The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.
Cell(Cambridge,Mass.), 135, 2008
2WTY
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BU of 2wty by Molmil
Crystal structure of the homodimeric MafB in complex with the T-MARE binding site
Descriptor: DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Consani Textor, L, Holton, S, Wilmanns, M.
Deposit date:2009-09-25
Release date:2010-12-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference.
Structure, 22, 2014
2N5O
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BU of 2n5o by Molmil
Universal Base oligonucleotide structure
Descriptor: DNA_(5'-D(*AP*TP*GP*GP*(4EN)P*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3')
Authors:Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W.
Deposit date:2015-07-23
Release date:2016-09-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res., 44, 2016
1Z7S
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BU of 1z7s by Molmil
The crystal structure of coxsackievirus A21
Descriptor: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, Human COXSACKIEVIRUS A21, ...
Authors:Xiao, C, Bator-Kelly, C.M, Rieder, E, Chipman, P.R, Craig, A, Kuhn, R.J, Wimmer, E, Rossmann, M.G.
Deposit date:2005-03-28
Release date:2005-08-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The crystal structure of coxsackievirus a21 and its interaction with icam-1.
Structure, 13, 2005
6R60
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BU of 6r60 by Molmil
asymmetric antiparallel assembly of two 5-bladed beta-propeller fragments
Descriptor: WD-40 repeat protein
Authors:Afanasieva, E, Lupas, A.N, Hartmann, M.D.
Deposit date:2019-03-26
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural diversity of oligomeric beta-propellers with different numbers of identical blades.
Elife, 8, 2019
2NNY
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BU of 2nny by Molmil
Crystal structure of the Ets1 dimer DNA complex.
Descriptor: 5'-D(*A*CP*TP*CP*CP*AP*GP*GP*AP*AP*GP*TP*GP*CP*TP*TP*CP*CP*TP*GP*TP*CP*T)-3', 5'-D(*T*AP*GP*AP*CP*AP*GP*GP*AP*AP*GP*CP*AP*CP*TP*TP*CP*CP*TP*GP*GP*AP*G)-3', C-ets-1 protein
Authors:Lamber, E.P, Kachalova, G.S, Wilmanns, M.
Deposit date:2006-10-24
Release date:2008-03-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Regulation of the transcription factor Ets-1 by DNA-mediated homo-dimerization.
Embo J., 27, 2008
5BQ7
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BU of 5bq7 by Molmil
Crystal structure of chikungunya virus-human Fab 5F-10 fragment
Descriptor: DI(HYDROXYETHYL)ETHER, Fab 5F-10-Heavy Chain, Fab 5F-10-Light Chain
Authors:Mangala Prasad, V, Rossmann, M.G.
Deposit date:2015-05-28
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.738 Å)
Cite:Structural Studies of Chikungunya Virus-Like Particles Complexed with Human Antibodies: Neutralization and Cell-to-Cell Transmission.
J.Virol., 90, 2015
2LAR
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BU of 2lar by Molmil
DNA / RNA Hybrid containing a central stereo specific Rp borano phosphate linkage
Descriptor: DNA_(5'-D(*AP*TP*GP*GP*TP*BGR*CP*TP*C)-3')_, RNA_(5'-R(*GP*AP*GP*CP*AP*CP*CP*AP*U)-3')_
Authors:Johnson, C.N, Spring, A.M, Shaw, B.R, Germann, M.W.
Deposit date:2011-03-18
Release date:2011-10-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis of the RNase H1 activity on stereo regular borano phosphonate DNA/RNA hybrids.
Biochemistry, 50, 2011
2LIB
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BU of 2lib by Molmil
DNA sequence context conceals alpha anomeric lesion
Descriptor: DNA (5'-D(*CP*GP*TP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*(A3A)P*GP*GP*AP*CP*G)-3')
Authors:Johnson, C.N, Spring, A.M, Cunningham, R.P, Germann, M.W.
Deposit date:2011-08-27
Release date:2012-08-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:DNA sequence context conceals alpha-anomeric lesions.
J.Mol.Biol., 416, 2012
3Q8J
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BU of 3q8j by Molmil
Crystal Structure of Asteropsin A from Marine Sponge Asteropus sp.
Descriptor: Asteropsin A, METHANOL
Authors:Bowling, J.J, Fronczek, F.R, Hamann, M.T, Li, H, Jung, J.H.
Deposit date:2011-01-06
Release date:2012-04-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:An Uncommon Crystal Structure of a Marine Knottin Peptide from Asteropus sp.
To be published
1YXN
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BU of 1yxn by Molmil
Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29
Descriptor: Major head protein
Authors:Morais, M.C, Choi, K.H, Koti, J.S, Chipman, P.R, Anderson, D.L, Rossmann, M.G.
Deposit date:2005-02-22
Release date:2005-04-26
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Conservation of the Capsid Structure in Tailed dsDNA Bacteriophages: the Pseudoatomic Structure of phi29
Mol.Cell, 18, 2005
1Z8Y
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BU of 1z8y by Molmil
Mapping the E2 Glycoprotein of Alphaviruses
Descriptor: Capsid protein C, Spike glycoprotein E1, Spike glycoprotein E2
Authors:Mukhopadhyay, S, Zhang, W, Gabler, S, Chipman, P.R, Strauss, E.G, Strauss, J.H, Baker, T.S, Kuhn, R.J, Rossmann, M.G.
Deposit date:2005-03-31
Release date:2006-02-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Mapping the structure and function of the E1 and E2 glycoproteins in alphaviruses.
Structure, 14, 2006
3RBS
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BU of 3rbs by Molmil
Crystal structure of the myomesin domains 10 and 11
Descriptor: BETA-MERCAPTOETHANOL, Myomesin-1, NITRATE ION
Authors:Chatziefthimiou, S.D, Pinotsis, N, Wilmanns, M.
Deposit date:2011-03-29
Release date:2012-03-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Superhelical architecture of the Myosin filament-linking protein myomesin with unusual elastic properties.
Plos Biol., 10, 2012
3DTX
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BU of 3dtx by Molmil
Crystal structure of HLA-B*2705 complexed with the double citrullinated vasoactive intestinal peptide type 1 receptor (VIPR) peptide (residues 400-408)
Descriptor: Beta-2-microglobulin, Double citrullinated vasoactive intestinal polypeptide receptor, MHC class I antigen (Fragment)
Authors:Beltrami, A, Gabdulkhakov, A, Rossmann, M, Ziegler, A, Uchanska-Ziegler, B, Saenger, W.
Deposit date:2008-07-16
Release date:2009-05-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Citrullination-and mhc polymorphism-dependent conformational changes of a self peptide
To be Published
3DP5
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BU of 3dp5 by Molmil
Crystal structure of Geobacter sulfurreducens OmcF with N-terminal Strep-tag II
Descriptor: Cytochrome c family protein, HEME C, SULFATE ION
Authors:Lukat, P, Hoffmann, M, Einsle, O.
Deposit date:2008-07-07
Release date:2008-09-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal packing of the c(6)-type cytochrome OmcF from Geobacter sulfurreducens is mediated by an N-terminal Strep-tag II
ACTA CRYSTALLOGR.,SECT.D, 64, 2008
2FL8
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BU of 2fl8 by Molmil
Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
Descriptor: Baseplate structural protein Gp10
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-05
Release date:2006-04-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
2LDB
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BU of 2ldb by Molmil
STRUCTURE DETERMINATION AND REFINEMENT OF BACILLUS STEAROTHERMOPHILUS LACTATE DEHYDROGENASE
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, L-LACTATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Piontek, K, Rossmann, M.G.
Deposit date:1989-03-27
Release date:1989-07-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure determination and refinement of Bacillus stearothermophilus lactate dehydrogenase.
Proteins, 7, 1990
2Y89
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BU of 2y89 by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHORIBOSYL ISOMERASE A (VARIANT D11N)
Descriptor: PHOSPHORIBOSYL ISOMERASE A, SULFATE ION
Authors:Due, A.V, Kuper, J, Geerlof, A, Wilmanns, M.
Deposit date:2011-02-03
Release date:2011-03-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Bisubstrate Specificity in Histidine/Tryptophan Biosynthesis Isomerase from Mycobacterium Tuberculosis by Active Site Metamorphosis.
Proc.Natl.Acad.Sci.USA, 108, 2011
1WYK
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BU of 1wyk by Molmil
SINDBIS VIRUS CAPSID PROTEIN (114-264)
Descriptor: 1,4-DIETHYLENE DIOXIDE, FORMYL GROUP, SINDBIS VIRUS CAPSID PROTEIN
Authors:Lee, S, Kuhn, R.J, Rossmann, M.G.
Deposit date:1998-01-12
Release date:1998-04-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the potential glycoprotein binding site of sindbis virus capsid protein with dioxane and model building.
Proteins, 33, 1998
3SHS
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BU of 3shs by Molmil
Three N-terminal domains of the bacteriophage RB49 Highly Immunogenic Outer Capsid protein (Hoc)
Descriptor: Hoc head outer capsid protein, MAGNESIUM ION
Authors:Fokine, A, Islam, M.Z, Zhang, Z, Bowman, V.D, Rao, V.B, Rossmann, M.G.
Deposit date:2011-06-16
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.
J.Virol., 85, 2011
1ZUZ
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BU of 1zuz by Molmil
Calmodulin in complex with a mutant peptide from human DRP-1 kinase
Descriptor: CALCIUM ION, DRP-1 kinase, calmodulin
Authors:Kursula, P, Vahokoski, J, Wilmanns, M.
Deposit date:2005-06-01
Release date:2006-11-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Recognition of human death-associated protein kinases by calmodulin
To be Published
3TXQ
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BU of 3txq by Molmil
Crystal Structure of phage 44RR small terminase gp16
Descriptor: Terminase DNA packaging enzyme small subunit
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2011-09-23
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
Proc.Natl.Acad.Sci.USA, 109, 2012
3ZFF
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BU of 3zff by Molmil
Human enterovirus 71 in complex with capsid binding inhibitor WIN51711
Descriptor: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE, VP1, VP2, ...
Authors:Plevka, P, Perera, R, Yap, M.L, Cardosa, J, Kuhn, R.J, Rossmann, M.G.
Deposit date:2012-12-11
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor.
Proc.Natl.Acad.Sci.USA, 110, 2013
2N5P
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BU of 2n5p by Molmil
Universal base control oligonucleotide structure
Descriptor: DNA_(5'-D(*AP*TP*GP*GP*AP*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3')
Authors:Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W.
Deposit date:2015-07-23
Release date:2016-09-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res., 44, 2016
3ZFE
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BU of 3zfe by Molmil
Human enterovirus 71 in complex with capsid binding inhibitor WIN51711
Descriptor: CHLORIDE ION, SODIUM ION, SPHINGOSINE, ...
Authors:Plevka, P, Perera, R, Yap, M.L, Cardosa, J, Kuhn, R.J, Rossmann, M.G.
Deposit date:2012-12-11
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Human Enterovirus 71 in Complex with a Capsid-Binding Inhibitor.
Proc.Natl.Acad.Sci.USA, 110, 2013

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