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PDB: 52230 results

5GVO
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BU of 5gvo by Molmil
Solution NMR structure of a new lasso peptide sphaericin
Descriptor: Uncharacterized protein
Authors:Hemmi, H, Kodani, S, Inoue, Y, Suzuki, M, Dohra, H, Suzuki, T, Ohnishi-Kameyama, M.
Deposit date:2016-09-06
Release date:2017-04-05
Method:SOLUTION NMR
Cite:Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica
Eur.J.Org.Chem., 2017
6FG0
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BU of 6fg0 by Molmil
Crystal structure of R. ruber ADH-A, mutant Y54G, F43T, L119Y, F282W
Descriptor: Alcohol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
Authors:Dobritzsch, D, Maurer, D, Hamnevik, E, Enugala, T.R, Widersten, M.
Deposit date:2018-01-09
Release date:2018-12-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Stereo- and Regioselectivity in Catalyzed Transformation of a 1,2-Disubstituted Vicinal Diol and the Corresponding Diketone by Wild Type and Laboratory Evolved Alcohol Dehydrogenases
Acs Catalysis, 8, 2018
5N77
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BU of 5n77 by Molmil
Crystal structure of the cytosolic domain of the CorA magnesium channel from Escherichia coli in complex with magnesium
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, MAGNESIUM ION, Magnesium transport protein CorA
Authors:Lerche, M, Sandhu, H, Flockner, L, Hogbom, M, Rapp, M.
Deposit date:2017-02-20
Release date:2017-07-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and Cooperativity of the Cytosolic Domain of the CorA Mg(2+) Channel from Escherichia coli.
Structure, 25, 2017
5CLY
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BU of 5cly by Molmil
X-ray structure of TTR mutant - S52P at 1.23A resolution
Descriptor: GLYCEROL, Transthyretin
Authors:Yee, A.W, Moulin, M, Mossou, E, Haertlein, M, Mitchell, E.P, Cooper, J.B, Forsyth, V.T.
Deposit date:2015-07-16
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:X-ray structure of TTR mutant - S52P at 1.23A resolution
To Be Published
6F66
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BU of 6f66 by Molmil
Crystal structure of glutathione transferase Omega 3S from Trametes versicolor in complex with 2,4-Dihydroxybenzophenone
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ...
Authors:Schwartz, M, Favier, F, Didierjean, C.
Deposit date:2017-12-05
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor.
Sci Rep, 8, 2018
5GXG
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BU of 5gxg by Molmil
High-resolution crystal structure of the electron transfer complex of cytochrome p450cam with putidaredoxin
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Camphor 5-monooxygenase, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Kikui, Y, Hiruma, Y, Ubbink, M, Nojiri, M.
Deposit date:2016-09-17
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification of productive and futile encounters in an electron transfer protein complex
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6ROA
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BU of 6roa by Molmil
Crystal structure of V57G mutant of human cystatin C
Descriptor: Cystatin-C
Authors:Orlikowska, M, Behrendt, I, Borek, D, Otwinowski, Z, Skowron, P, Szymanska, A.
Deposit date:2019-05-10
Release date:2019-08-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:NMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitution.
Febs J., 287, 2020
2Q9M
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BU of 2q9m by Molmil
4-Substituted Trinems as Broad Spectrum-Lactamase Inhibitors: Structure-based Design, Synthesis and Biological Activity
Descriptor: (1R,4S,7AS)-1-(1-FORMYLPROP-1-EN-1-YL)-4-METHOXY-2,4,5,6,7,7A-HEXAHYDRO-1H-ISOINDOLE-3-CARBOXYLIC ACID, Beta-lactamase
Authors:Plantan, I, Selic, L, Mesar, T, Stefanic Anderluh, P, Oblak, M, Prezelj, A, Hesse, L, Andrejasic, M, Vilar, M, Turk, D, Kocijan, A, Prevec, T, Vilfan, G, Kocjan, D, Copar, A, Urleb, U, Solmajer, T.
Deposit date:2007-06-13
Release date:2007-08-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:4-Substituted Trinems as Broad Spectrum beta-Lactamase Inhibitors: Structure-Based Design, Synthesis, and Biological Activity
J.Med.Chem., 50, 2007
5CLZ
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BU of 5clz by Molmil
X-ray structure of TTR mutant - T119M at 1.22A resolution
Descriptor: Transthyretin
Authors:Yee, A.W, Moulin, M, Mossou, E, Cooper, J.B, Haertlein, M, Mitchell, E.P, Forsyth, V.T.
Deposit date:2015-07-16
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:X-ray structure of TTR mutant - T119M at 1.22A resolution
To Be Published
5CN3
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BU of 5cn3 by Molmil
X-ray structure of wild-type TTR at 1.30A resolution
Descriptor: Transthyretin
Authors:Yee, A.W, Moulin, M, Mossou, E, Haertlein, M, Mitchell, E.P, Cooper, J.B, Forsyth, V.T.
Deposit date:2015-07-17
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Impact of Deuteration on the Assembly Kinetics of Transthyretin Monitored by Native Mass Spectrometry and Implications for Amyloidoses.
Angew.Chem.Int.Ed.Engl., 55, 2016
7QCX
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BU of 7qcx by Molmil
Two-state liquid NMR Structure of a PDZ2 Domain from hPTP1E, apo form
Descriptor: Tyrosine-protein phosphatase non-receptor type 13
Authors:Ashkinadze, D, Kadavath, H, Chi, C, Friedmann, M, Strotz, D, Kumari, P, Minges, M, Cadalbert, R, Koenigl, S, Guentert, P, Voegeli, B, Riek, R.
Deposit date:2021-11-25
Release date:2022-09-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Atomic resolution protein allostery from the multi-state structure of a PDZ domain.
Nat Commun, 13, 2022
6RR3
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BU of 6rr3 by Molmil
CRYSTAL STRUCTURE OF FAD-CONTAINING FERREDOXIN-NADP REDUCTASE FROM BRUCELLA OVIS
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin-NADP reductase
Authors:Martinez-Julvez, M, Taleb, V, Medina, M.
Deposit date:2019-05-16
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Towards the competent conformation for catalysis in the ferredoxin-NADP+reductase from the Brucella ovis pathogen.
Biochim Biophys Acta Bioenerg, 1860, 2019
6ZRE
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BU of 6zre by Molmil
Deciphering the role of the channel constrictions in the opening mechanism of MexAB-OprM efflux pump from Pseudomonas aeruginosa
Descriptor: Outer membrane protein OprM, PALMITIC ACID, SULFATE ION, ...
Authors:Ntsogo Enguene, Y.V, Monlezun, L, Ma, M, Garnier, C, Lascombe, M.B, Salem, M, Guenard, S, Plesiat, P, Llanes, C, Phan, G, Broutin, I.
Deposit date:2020-07-13
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Deciphering the role of OprM constrictions in the opening mechanism of the MexAB-OprM efflux pump from Pseudomonas aeruginosa.
To Be Published
7QCY
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BU of 7qcy by Molmil
Two-state liquid NMR Structure of a PDZ2 Domain from hPTP1E, complexed with RA-GEF2 peptide
Descriptor: Tyrosine-protein phosphatase non-receptor type 13
Authors:Ashkinadze, D, Kadavath, H, Chi, C, Friedmann, M, Strotz, D, Kumari, P, Minges, M, Cadalbert, R, Koenigl, S, Guentert, P, Voegeli, B, Riek, R.
Deposit date:2021-11-25
Release date:2022-09-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Atomic resolution protein allostery from the multi-state structure of a PDZ domain.
Nat Commun, 13, 2022
8K1R
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BU of 8k1r by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)
Authors:Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
Deposit date:2023-07-11
Release date:2024-03-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:YeeD is an essential partner for YeeE-mediated thiosulfate uptake in bacteria and regulates thiosulfate ion decomposition.
Plos Biol., 22, 2024
7GPQ
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BU of 7gpq by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with POB0008
Descriptor: Protease 3C, methyl 1-(methanesulfonyl)-2-methyl-D-prolinate
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
7GPT
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BU of 7gpt by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with POB0026
Descriptor: DIMETHYL SULFOXIDE, Protease 3C, [(2S,3S)-1-(methanesulfonyl)-3-methylpiperidin-2-yl]methanol
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
6ZVR
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BU of 6zvr by Molmil
C11 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Descriptor: Vipp1
Authors:Liu, J.W, Tassinari, M, Souza, D.P, Naskar, S, Noel, J.K, Bohuszewicz, O, Buck, M, Williams, T.A, Baum, B, Low, H.H.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Cell, 184, 2021
7GPW
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BU of 7gpw by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with NCL-00023824
Descriptor: 4-iodanyl-3~{H}-pyridin-2-one, DIMETHYL SULFOXIDE, Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
6ZW4
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BU of 6zw4 by Molmil
C14 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Descriptor: vipp1
Authors:Liu, J.W, Tassinari, M, Souza, D.P, Naskar, S, Noel, J.K, Bohuszewicz, O, Buck, M, Williams, T.A, Baum, B, Low, H.H.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Cell, 184, 2021
7GOT
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BU of 7got by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with Z26781952
Descriptor: DIMETHYL SULFOXIDE, N-[(1H-benzimidazol-2-yl)methyl]butanamide, Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
7GOZ
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BU of 7goz by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with Z381474098
Descriptor: (2R)-N-(pyridin-2-yl)-1,4-dioxane-2-carboxamide, Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
6ZW5
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BU of 6zw5 by Molmil
C15 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Descriptor: vipp1
Authors:Liu, J.W, Tassinari, M, Souza, D.P, Naskar, S, Noel, J.K, Bohuszewicz, O, Buck, M, Williams, T.A, Baum, B, Low, H.H.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.
Cell, 184, 2021
7GP5
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BU of 7gp5 by Molmil
PanDDA analysis group deposition -- Crystal Structure of Enterovirus D68 3C Protease in complex with Z50145861
Descriptor: 5-methyl-2-phenyl-2,4-dihydro-3H-pyrazol-3-one, Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Thompson, W, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-08-24
Release date:2023-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals.
Biorxiv, 2024
5CD9
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BU of 5cd9 by Molmil
Crystal structure of the CTD of Drosophila Oskar protein
Descriptor: Maternal effect protein oskar, SULFATE ION
Authors:Yang, N, Hu, M, Yu, Z, Wang, M, Lehmann, R, Xu, R.M.
Deposit date:2015-07-03
Release date:2015-09-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure of Drosophila Oskar reveals a novel RNA binding protein
Proc.Natl.Acad.Sci.USA, 112, 2015

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