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PDB: 52259 results

8BL7
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BU of 8bl7 by Molmil
Structure of GroEL-nucleotide complex in ADP-like conformation plunged 13 ms after mixing with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8B1C
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BU of 8b1c by Molmil
DtpB-Nb132-ALA
Descriptor: ALA-LEU-ALA, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
8B1D
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BU of 8b1d by Molmil
DtpB-Nb132-APF
Descriptor: ALA-PRO-PHE, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
1XZZ
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BU of 1xzz by Molmil
Crystal structure of the ligand binding suppressor domain of type 1 inositol 1,4,5-trisphosphate receptor
Descriptor: GLYCEROL, Inositol 1,4,5-trisphosphate receptor type 1
Authors:Bosanac, I, Yamazaki, H, Matsu-ura, T, Michikawa, T, Mikoshiba, K, Ikura, M.
Deposit date:2004-11-13
Release date:2005-01-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ligand binding suppressor domain of type 1 inositol 1,4,5-trisphosphate receptor.
Mol.Cell, 17, 2005
8B1F
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BU of 8b1f by Molmil
DtpB-Nb132-AV
Descriptor: ALA-VAL, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
8BLD
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BU of 8bld by Molmil
Structure of the GroEL(ATP7/ADP7) complex plunged 13 ms after mixing with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
2VM9
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BU of 2vm9 by Molmil
Native structure of the recombinant discoidin II of Dictyostelium discoideum at 1.75 angstrom
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Aragao, K.S, Satre, M, Imberty, A, Varrot, A.
Deposit date:2008-01-24
Release date:2008-07-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
Proteins, 73, 2008
4JB3
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BU of 4jb3 by Molmil
Crystal structure of BT_0970, a had family phosphatase from bacteroides thetaiotaomicron VPI-5482, TARGET EFI-501083, with bound sodium and glycerol, closed lid, ordered loop
Descriptor: GLYCEROL, Haloacid dehalogenase-like hydrolase, SODIUM ION
Authors:Vetting, M.W, Toro, R, Bhosle, R, Kumar, P.R, Ghosh, A, Al Obaidi, N.F, Stead, M, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Dunaway-Mariano, D, Allen, K.N, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-02-19
Release date:2013-03-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of bt_0970, a had family phosphatase from bacteroides thetaiotaomicron VPI-5482, TARGET EFI-501083, with bound sodium and glycerol, closed lid, ordered loop
To be Published
8BMO
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BU of 8bmo by Molmil
Structure of GroEL:GroES complex exhibiting ADP-conformation in trans ring obtained under the continuous turnover conditions
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
2VDW
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BU of 2vdw by Molmil
Guanosine N7 methyl-transferase sub-complex (D1-D12) of the vaccinia virus mRNA capping enzyme
Descriptor: MRNA-CAPPING ENZYME SMALL SUBUNIT, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:De la Pena, M, Kyrieleis, O.J.P, Cusack, S.
Deposit date:2007-10-12
Release date:2008-05-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Insights Into the Mechanism and Evolution of the Vaccinia Virus Mrna CAP N7 Methyl- Transferase.
Embo J., 26, 2007
4JBE
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BU of 4jbe by Molmil
1.95 Angstrom Crystal Structure of Gamma-glutamyl phosphate Reductase from Saccharomonospora viridis.
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BETA-MERCAPTOETHANOL, ...
Authors:Minasov, G, Filippova, E.V, Halavaty, A, Shuvalova, L, Kiryukhina, O, Endres, M, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-02-19
Release date:2013-03-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:1.95 Angstrom Crystal Structure of Gamma-glutamyl phosphate Reductase from Saccharomonospora viridis.
TO BE PUBLISHED
1XIX
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BU of 1xix by Molmil
Crystal Structure of Weissella viridescens FemX Form II
Descriptor: FemX
Authors:Biarrotte-Sorin, S, Maillard, A.P, Arthur, M, Mayer, C.
Deposit date:2004-09-22
Release date:2005-05-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Site-Directed Mutagenesis of the UDP-MurNAc-Pentapeptide-Binding Cavity of the FemX Alanyl Transferase from Weissella viridescens
J.Bacteriol., 187, 2005
4JCI
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BU of 4jci by Molmil
Crystal structure of csal_2705, a putative hydroxyproline epimerase from CHROMOHALOBACTER SALEXIGENS (TARGET EFI-506486), SPACE GROUP P212121, unliganded
Descriptor: Proline racemase, SODIUM ION
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Stead, M, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-02-21
Release date:2013-03-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of csal_2705, a putative hydroxyproline epimerase from CHROMOHALOBACTER SALEXIGENS (TARGET EFI-506486), space group P212121, unliganded
To be Published
8BL2
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BU of 8bl2 by Molmil
Structure of GroEL-ATP complex plunge frozen 200 ms after reaction initiation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, MAGNESIUM ION, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
1XJ9
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BU of 1xj9 by Molmil
Crystal structure of a partly self-complementary peptide nucleic acid (PNA) oligomer showing a duplex-triplex network
Descriptor: peptide nucleic acid, (H-P(*GPN*TPN*APN*GPN*APN*TPN*CPN*APN*CPN*TPN)-LYS-NH2)
Authors:Petersson, B, Nielsen, B.B, Rasmussen, H, Larsen, I.K, Gajhede, M, Nielsen, P.E, Kastrup, J.S.
Deposit date:2004-09-23
Release date:2005-02-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of a Partly Self-Complementary Peptide Nucleic Acid (PNA) Oligomer Showing a Duplex-Triplex Network
J.Am.Chem.Soc., 127, 2005
8B1J
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BU of 8b1j by Molmil
DtpB-Nb132-SL
Descriptor: DECANE, DODECANE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
2VEX
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BU of 2vex by Molmil
CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B IN COMPLEX WITH AN ISOTHIAZOLIDINONE-CONTAINING INHIBITOR
Descriptor: MAGNESIUM ION, N-{(1S)-2-{4-[(5S)-1,1-dioxido-3-oxoisothiazolidin-5-yl]phenyl}-1-[(4R)-4-(2-phenylethyl)-4,5-dihydro-1H-imidazol-2-yl]ethyl}-3-fluorobenzenesulfonamide, TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1
Authors:Douty, B, Wayland, B, Ala, P.J, Bower, M.J, Pruitt, J, Bostrom, L, Wei, M, Klabe, R, Gonneville, L, Wynn, R, Burn, T.C, Liu, P.C.C, Combs, A.P, Yue, E.W.
Deposit date:2007-10-27
Release date:2007-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Isothiazolidinone Inhibitors of Ptp1B Containing Imidazoles and Imidazolines
Bioorg.Med.Chem.Lett., 18, 2008
4JCC
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BU of 4jcc by Molmil
Crystal structure of iron uptake ABC transporter substrate-binding protein PiuA from Streptococcus pneumoniae Canada MDR_19A
Descriptor: CHLORIDE ION, ISOPROPYL ALCOHOL, Iron-compound ABC transporter, ...
Authors:Stogios, P.J, Wawrzak, Z, Kudritska, M, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-02-21
Release date:2013-03-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.133 Å)
Cite:Crystal structure of iron uptake ABC transporter substrate-binding protein PiuA from Streptococcus pneumoniae Canada MDR_19A
TO BE PUBLISHED
1XT5
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BU of 1xt5 by Molmil
Crystal Structure of VCBP3, domain 1, from Branchiostoma floridae
Descriptor: SULFATE ION, variable region-containing chitin-binding protein 3
Authors:Hernandez Prada, J.A, Haire, R.N, Cannon, J.P, Allaire, M, Jakoncic, J, Stojanoff, V, Litman, G.W, Ostrov, D.A.
Deposit date:2004-10-21
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus.
Nat.Immunol., 7, 2006
8BLE
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BU of 8ble by Molmil
Structure of GroEL-nucleotide complex in ADP-like conformation plunged 50 ms after mixing with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8BKA
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BU of 8bka by Molmil
Cryo-EM structure of mouse heavy-chain apoferritin at 2.7 A plunged 35ms after mixing with b-galactosidase
Descriptor: FE (III) ION, Ferritin heavy chain
Authors:Torino, S, Dhurandhar, M, Efremov, R.
Deposit date:2022-11-08
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
2VAH
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BU of 2vah by Molmil
Solution structure of a B-DNA hairpin at low pressure.
Descriptor: 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3'
Authors:Williamson, M.P, Wilton, D.J, Ghosh, M, Chary, K.V.A, Akasaka, K.
Deposit date:2007-08-31
Release date:2007-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Change in a B-DNA Helix with Hydrostatic Pressure
Nucleic Acids Res., 36, 2008
8BKZ
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BU of 8bkz by Molmil
GroEL:GroES-ATP complex under continuous turnover conditions
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-09
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
1XKG
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BU of 1xkg by Molmil
Crystal structure of the major house dust mite allergen Der p 1 in its pro form at 1.61 A resolution
Descriptor: GLYCEROL, Major mite fecal allergen Der p 1, SULFATE ION, ...
Authors:Meno, K, Thorsted, P.B, Gajhede, M.
Deposit date:2004-09-29
Release date:2005-06-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:The crystal structure of recombinant proDer p 1, a major house dust mite proteolytic allergen.
J.Immunol., 175, 2005
2VGB
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BU of 2vgb by Molmil
HUMAN ERYTHROCYTE PYRUVATE KINASE
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 2-PHOSPHOGLYCOLIC ACID, MANGANESE (II) ION, ...
Authors:Valentini, G, Chiarelli, L, Fortin, R, Dolzan, M, Galizzi, A, Abraham, D.J, Wang, C, Bianchi, P, Zanella, A, Mattevi, A.
Deposit date:2007-11-12
Release date:2007-11-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Structure and Function of Human Erythrocyte Pyruvate Kinase. Molecular Basis of Nonspherocytic Hemolytic Anemia.
J.Biol.Chem., 277, 2002

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