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PDB: 51689 results

6SF3
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BU of 6sf3 by Molmil
Bone morphogenetic protein 10 (BMP10) in complex with extracellular domain of activin receptor-like kinase 1 (ALK1) at 2.3 Angstrom
Descriptor: Bone morphogenetic protein 10, Serine/threonine-protein kinase receptor R3
Authors:Guo, J, Yu, M, Li, W.
Deposit date:2019-07-31
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.30000663 Å)
Cite:Molecular basis of ALK1-mediated signalling by BMP9/BMP10 and their prodomain-bound forms.
Nat Commun, 11, 2020
7EFI
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BU of 7efi by Molmil
RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
Descriptor: DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')
Authors:Kondo, J, Nagashima, M.
Deposit date:2021-03-21
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
5OCM
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BU of 5ocm by Molmil
Imine Reductase from Streptosporangium roseum in complex with NADP+ and 2,2,2-trifluoroacetophenone hydrate
Descriptor: 2,2,2-trifluoromethyl acetophenone hydrate, MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sharma, M, Nestl, B, Grogan, G.
Deposit date:2017-07-03
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:New imine-reducing enzymes from beta-hydroxyacid dehydrogenases by single amino acid substitutions.
Protein Eng. Des. Sel., 31, 2018
7KX5
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BU of 7kx5 by Molmil
Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A
Descriptor: 3C-like proteinase, GLYCEROL, N-([1,1'-biphenyl]-4-yl)-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]furan-2-carboxamide
Authors:Sacco, M, Wang, J, Chen, Y.
Deposit date:2020-12-03
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Discovery of Di- and Trihaloacetamides as Covalent SARS-CoV-2 Main Protease Inhibitors with High Target Specificity.
J.Am.Chem.Soc., 143, 2021
6S9Q
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BU of 6s9q by Molmil
Fragment AZ-004 binding at a primary and secondary site in a p53pT387/14-3-3 complex
Descriptor: 14-3-3 protein sigma, 4-methyl-5-phenyl-thiophene-2-carboximidamide, CALCIUM ION, ...
Authors:Leysen, S, Guillory, X, Wolter, M, Genet, S, Somsen, B, Patel, J, Castaldi, P, Ottmann, C.
Deposit date:2019-07-15
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Fragment-based Differential Targeting of PPI Stabilizer Interfaces.
J.Med.Chem., 63, 2020
6SBB
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BU of 6sbb by Molmil
Structure of type II terpene cyclase MstE from Scytonema (apo)
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Moosmann, P, Ecker, F, Leopold-Messer, S, Cahn, J.K.B, Groll, M, Piel, J.
Deposit date:2019-07-19
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A monodomain class II terpene cyclase assembles complex isoprenoid scaffolds.
Nat.Chem., 12, 2020
7EFH
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BU of 7efh by Molmil
RNA kink-turn motif
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Kondo, J, Nagashima, M.
Deposit date:2021-03-21
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:RNA kink-turn motif
To Be Published
6SB2
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BU of 6sb2 by Molmil
cryo-EM structure of mTORC1 bound to active RagA/C GTPases
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Ras-related GTP-binding protein A, ...
Authors:Anandapadamanaban, M, Berndt, A, Masson, G.R, Perisic, O, Williams, R.L.
Deposit date:2019-07-18
Release date:2019-10-16
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Architecture of human Rag GTPase heterodimers and their complex with mTORC1.
Science, 366, 2019
7EI2
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BU of 7ei2 by Molmil
Structure of human NNMT in complex with macrocyclic peptide 8
Descriptor: Nicotinamide N-methyltransferase, macrocyclic peptide 8
Authors:Hayashi, K, Mikamiyama, H, Uehara, S, Yamamoto, S, Cary, D, Nishikawa, J, Ueda, T, Ozasa, H, Mihara, K, Yoshimura, N, Kawai, T, Ono, T, Yamamoto, S, Fumoto, M.
Deposit date:2021-03-30
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Macrocyclic Peptides as a Novel Class of NNMT Inhibitors: A SAR Study Aimed at Inhibitory Activity in the Cell.
Acs Med.Chem.Lett., 12, 2021
5OFO
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BU of 5ofo by Molmil
Cryo EM structure of the E. coli disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state, bound to the model substrate casein
Descriptor: Chaperone protein ClpB,ATP-dependent Clp protease ATP-binding subunit ClpA,Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Deville, C, Carroni, M, Franke, K.B, Topf, M, Bukau, B, Mogk, A, Saibil, H.R.
Deposit date:2017-07-11
Release date:2017-08-16
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural pathway of regulated substrate transfer and threading through an Hsp100 disaggregase.
Sci Adv, 3, 2017
1X58
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BU of 1x58 by Molmil
Solution structures of the myb-like DNA binding domain of 4930532D21Rik protein
Descriptor: Hypothetical protein 4930532D21Rik
Authors:Nameki, N, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2005-11-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structures of the myb-like DNA binding domain of 4930532D21Rik protein
To be Published
6SF2
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BU of 6sf2 by Molmil
Ternary complex of human bone morphogenetic protein 9 (BMP9) growth factor domain, its prodomain and extracellular domain of activin receptor-like kinase 1 (ALK1).
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Growth/differentiation factor 2, Serine/threonine-protein kinase receptor R3
Authors:Salmon, R.M, Guo, J, Yu, M, Li, W.
Deposit date:2019-07-31
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular basis of ALK1-mediated signalling by BMP9/BMP10 and their prodomain-bound forms.
Nat Commun, 11, 2020
6SHU
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BU of 6shu by Molmil
Borrelia burgdorferi BmpD nucleoside binding protein bound to adenosine
Descriptor: ADENOSINE, Basic membrane protein D, CHLORIDE ION, ...
Authors:Guedez, G, Astrand, M, Cuellar, J, Hytonen, J, Salminen, T.A.
Deposit date:2019-08-08
Release date:2020-02-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.43002868 Å)
Cite:Structural and Biomolecular Analyses of Borrelia burgdorferi BmpD Reveal a Substrate-Binding Protein of an ABC-Type Nucleoside Transporter Family.
Infect.Immun., 88, 2020
1TO5
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BU of 1to5 by Molmil
Structure of the cytosolic Cu,Zn SOD from S. mansoni
Descriptor: ACETATE ION, COPPER (II) ION, Superoxide dismutase, ...
Authors:Cardoso, R.M.F, Silva, C.H.T.P, Ulian de Araujo, A.P, Tanaka, T, Tanaka, M, Garratt, R.C.
Deposit date:2004-06-12
Release date:2004-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the cytosolic Cu,Zn superoxide dismutase from Schistosoma mansoni.
Acta Crystallogr.,Sect.D, 60, 2004
3I4L
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BU of 3i4l by Molmil
Structural characterization for the nucleotide binding ability of subunit A with AMP-PNP of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
Authors:Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Jeyakanthan, J, Gruber, G.
Deposit date:2009-07-01
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
6SEV
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BU of 6sev by Molmil
Structure of Dps from Listeria innocua soaked with 10 mM zinc for 120 minutes
Descriptor: DNA starvation/stationary phase protection protein, ZINC ION
Authors:Zeth, K, Okuda, M.
Deposit date:2019-07-30
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
5ON7
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BU of 5on7 by Molmil
The ENTH domain from epsin-2 in complex with phosphatidylinositol 4,5-bisphosphate (PIP2)
Descriptor: Epsin-2, SULFATE ION, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Garcia-Alai, M, GIeras, A, Meijers, R.
Deposit date:2017-08-03
Release date:2018-03-07
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Epsin and Sla2 form assemblies through phospholipid interfaces.
Nat Commun, 9, 2018
6SAE
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BU of 6sae by Molmil
Cryo-EM structure of TMV in water
Descriptor: Capsid protein, MAGNESIUM ION, RNA (5'-R(P*GP*AP*A)-3')
Authors:Weis, F, Beckers, M, Sachse, C.
Deposit date:2019-07-16
Release date:2019-09-18
Last modified:2019-11-13
Method:ELECTRON MICROSCOPY (1.9 Å)
Cite:Elucidation of the viral disassembly switch of tobacco mosaic virus.
Embo Rep., 20, 2019
7ELK
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BU of 7elk by Molmil
Solution structure of Terfa derived from Danio rerio
Descriptor: Terfa protein
Authors:Yun, J.H, Kim, M, Lee, W.
Deposit date:2021-04-11
Release date:2022-04-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Terfa derived from Danio rerio
To Be Published
7EFG
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BU of 7efg by Molmil
RNA kink-turn motif
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Kondo, J, Nagashima, M.
Deposit date:2021-03-21
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:RNA kink-turn motif
To Be Published
7EIF
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BU of 7eif by Molmil
Crystal structure of GAS41 YEATS domain
Descriptor: GLYCEROL, YEATS domain-containing protein 4
Authors:Kikuchi, M, Umehara, T.
Deposit date:2021-03-30
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:GAS41 promotes H2A.Z deposition through recognition of the N terminus of histone H3 by the YEATS domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
7EKU
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BU of 7eku by Molmil
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W958A)
Descriptor: 4-alpha-glucanotransferase
Authors:Shen, M, Xiang, S.
Deposit date:2021-04-06
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W958A)
To Be Published
6SDH
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BU of 6sdh by Molmil
Human Carbonic Anhydrase II in complex with an inhibitor soaked at a concentration of 5 mM
Descriptor: (4-CARBOXYPHENYL)(CHLORO)MERCURY, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Gloeckner, S, Haake, M, Heine, A, Klebe, G.
Deposit date:2019-07-27
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Human Carbonic Anhydrase II in complex with an inhibitor soaked at a concentration of 5 mM
To Be Published
7EG5
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BU of 7eg5 by Molmil
FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Sugiura, N, Nakanishi, T, Kitamura, M.
Deposit date:2021-03-24
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403
To Be Published
6SEG
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BU of 6seg by Molmil
Class1: CENP-A nucleosome in complex with CENP-C central region
Descriptor: DNA (145-MER), Histone H2A type 2-A, Histone H2B type 1-C/E/F/G/I, ...
Authors:Ali-Ahmad, A, Bilokapic, S, Schafer, I.B, Halic, M, Sekulic, N.
Deposit date:2019-07-30
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:CENP-C unwraps the human CENP-A nucleosome through the H2A C-terminal tail.
Embo Rep., 20, 2019

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PDB entries from 2024-09-04

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