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PDB: 51689 results

5G36
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BU of 5g36 by Molmil
Yellow form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form
Descriptor: CHLORIDE ION, HALORHODOPSIN, RETINAL, ...
Authors:Schreiner, M, Schlesinger, R, Heberle, J, Niemann, H.H.
Deposit date:2016-04-20
Release date:2016-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Halobacterium Salinarum Halorhodopsin with Partially Depopulated Primary Chloride Binding Site
Acta Crystallogr.,Sect.F, 72, 2016
1CKQ
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BU of 1ckq by Molmil
PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX
Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PROTEIN (ENDONUCLEASE)
Authors:Horvath, M, Rosenberg, J.M.
Deposit date:1999-04-22
Release date:1999-04-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Integration of Recognition and Cleavage: X-Ray Structures of Pre- Transition State and Post-Reactive DNA-Eco Ri Endonuclease Complexes
To be Published
1CL8
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BU of 1cl8 by Molmil
A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)
Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3'), PROTEIN (ENDONUCLEASE)
Authors:Horvath, M, Rosenberg, J.M.
Deposit date:1999-05-06
Release date:1999-05-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Iap (Inner-Adenine to Purine): A Cognate EcoRI-DNA Base Analog Complex
To be Published
5KCH
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BU of 5kch by Molmil
SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy into weak electron density
Descriptor: 4-methoxy-N-[(pyridin-2-yl)methyl]aniline, DIMETHYL SULFOXIDE, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Tempel, W, Harding, R.J, Mader, P, Dobrovetsky, E, Walker, J.R, Brown, P.J, Schapira, M, Collins, P, Pearce, N, Brandao-Neto, J, Douangamath, A, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Santhakumar, V, Structural Genomics Consortium (SGC)
Deposit date:2016-06-06
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy
To Be Published
5KGW
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BU of 5kgw by Molmil
HIV1 catalytic core domain in complex with inhibitor: (2~{S})-2-[3-(3,4-dihydro-2~{H}-chromen-6-yl)-1-methyl-indol-2-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid
Descriptor: (2S)-tert-butoxy[3-(3,4-dihydro-2H-1-benzopyran-6-yl)-1-methyl-1H-indol-2-yl]acetic acid, Integrase, SULFATE ION
Authors:Feng, L, Kobe, M, Kvaratskhelia, M.
Deposit date:2016-06-13
Release date:2016-10-19
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Indole-based allosteric inhibitors of HIV-1 integrase.
Bioorg.Med.Chem.Lett., 26, 2016
5G4F
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BU of 5g4f by Molmil
Structure of the ADP-bound VAT complex
Descriptor: VCP-LIKE ATPASE
Authors:Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
Deposit date:2016-05-12
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
5UK6
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BU of 5uk6 by Molmil
Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy and DEER
Descriptor: Bacteriorhodopsin
Authors:Milikisiyants, S, Wang, S, Munro, R.A, Donohue, M, Ward, M.E, Brown, L.S, Smirnova, T.I, Ladizhansky, V, Smirnov, A.I.
Deposit date:2017-01-20
Release date:2017-05-31
Last modified:2020-01-08
Method:SOLID-STATE NMR
Cite:Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints.
J. Mol. Biol., 429, 2017
5UQS
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BU of 5uqs by Molmil
Crystal structure of Citrate synthase from Sus scrofa
Descriptor: CHLORIDE ION, Citrate synthase, mitochondrial
Authors:Schlachter, C, Chruszcz, M.
Deposit date:2017-02-08
Release date:2018-02-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Comparative studies of Aspergillus fumigatus 2-methylcitrate synthase and human citrate synthase.
Biol.Chem., 400, 2019
5GAH
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BU of 5gah by Molmil
RNC in complex with SRP with detached NG domain
Descriptor: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ...
Authors:Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N.
Deposit date:2015-11-26
Release date:2016-01-27
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
Nat Commun, 7, 2016
5UMM
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BU of 5umm by Molmil
CRYSTAL STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH 12-MER PEPTIDE INHIBITOR M3
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, PEPTIDE INHIBITOR M3
Authors:Pazgier, M, Gohain, N, Tolbert, W.D.
Deposit date:2017-01-27
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design of ultrahigh-affinity and dual-specificity peptide antagonists of MDM2 and MDMX for p53 activation
To Be Published
4N8E
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BU of 4n8e by Molmil
DPP4 complexed with compound 12a
Descriptor: 1-[cis-4-(aminomethyl)-4-(3-chlorophenyl)cyclohexyl]piperidin-2-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, ...
Authors:Ostermann, N, Zink, F, Kroemer, M.
Deposit date:2013-10-17
Release date:2014-02-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of C-(1-aryl-cyclohexyl)-methylamines as selective, orally available inhibitors of dipeptidyl peptidase IV.
Bioorg.Med.Chem.Lett., 24, 2014
1CE4
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BU of 1ce4 by Molmil
CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1
Descriptor: PROTEIN (V3 LOOP OF HIV-1 ENVELOPE PROTEIN)
Authors:Vranken, W.F, Fant, F, Budesinsky, M, Borremans, F.A.M.
Deposit date:1999-03-15
Release date:1999-03-18
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The complete Consensus V3 loop peptide of the envelope protein gp120 of HIV-1 shows pronounced helical character in solution.
FEBS Lett., 374, 1995
5KHY
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BU of 5khy by Molmil
Crystal structure of oxime-linked K6 diubiquitin
Descriptor: ETHANOLAMINE, Polyubiquitin-B, ZINC ION
Authors:Stanley, M, Virdee, S.
Deposit date:2016-06-16
Release date:2016-09-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.501 Å)
Cite:Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates.
Chembiochem, 17, 2016
5KGZ
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BU of 5kgz by Molmil
Phenol-soluble modulin Beta2
Descriptor: Modulin Beta2
Authors:Towle, K.M, Lohans, C.T, Acedo, J.Z, Van Belkum, M.J, Miskolzie, M, Vederas, J.C.
Deposit date:2016-06-13
Release date:2016-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structures of Phenol-Soluble Modulins alpha 1, alpha 3, and beta 2, Virulence Factors from Staphylococcus aureus.
Biochemistry, 55, 2016
5H8Y
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BU of 5h8y by Molmil
Crystal structure of the complex between maize sulfite reductase and ferredoxin in the form-2 crystal
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, ...
Authors:Kurisu, G, Nakayama, M, Hase, T.
Deposit date:2015-12-25
Release date:2016-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and mutational studies of an electron transfer complex of maize sulfite reductase and ferredoxin.
J.Biochem., 160, 2016
5KH6
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BU of 5kh6 by Molmil
SETDB1 in complex with a fragment candidate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Walker, J.R, Harding, R.J, Mader, P, Dobrovetsky, E, Dong, A, Collins, P, Pearce, N, Brandao-Neto, J, Douangamath, A, von Delft, F, Brown, P.J, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Santhakumar, V, Structural Genomics Consortium (SGC)
Deposit date:2016-06-14
Release date:2016-09-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:SETDB1 in complex with a fragment candidate
To be published
8DLA
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BU of 8dla by Molmil
ClpP2 from Chlamydia trachomatis bound by MAS1-12
Descriptor: 1-{4-[(4-chlorophenyl)methyl]piperazin-1-yl}-2-methyl-2-[5-(trifluoromethyl)pyridine-2-sulfonyl]propan-1-one, ATP-dependent Clp protease proteolytic subunit 2, GLYCEROL, ...
Authors:Azadmanesh, J, Struble, L.R, Seleem, M.A, Ouellette, S, Conda-Sheridan, M, Borgstahl, G.E.O.
Deposit date:2022-07-07
Release date:2023-08-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:The structure of caseinolytic protease subunit ClpP2 reveals a functional model of the caseinolytic protease system from Chlamydia trachomatis.
J.Biol.Chem., 299, 2023
1CJY
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BU of 1cjy by Molmil
HUMAN CYTOSOLIC PHOSPHOLIPASE A2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, PROTEIN (CYTOSOLIC PHOSPHOLIPASE A2)
Authors:Dessen, A, Tang, J, Schmidt, H, Stahl, M, Clark, J.D, Seehra, J, Somers, W.S.
Deposit date:1999-04-20
Release date:2000-04-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human cytosolic phospholipase A2 reveals a novel topology and catalytic mechanism.
Cell(Cambridge,Mass.), 97, 1999
5UTO
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BU of 5uto by Molmil
The crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with palmitic acid to 1.83 Angstrom resolution
Descriptor: EDD domain protein, DegV family, PALMITIC ACID
Authors:Cuypers, M.G, Ericson, M, Subramanian, C, Broussard, T.C, Miller, D.J, White, S.W, Rock, C.O.
Deposit date:2017-02-15
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The crystal structure of the Staphylococcus aureus Fatty acid Kinase (Fak) B1 protein loaded with palmitic acid to 1.83 Angstroem resolution
J.Biol.Chem., 2018
5OV7
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BU of 5ov7 by Molmil
tubulin - rigosertib complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
Authors:Menchon, G, Prota, A.E, Steinmetz, M, Jost, M.
Deposit date:2017-08-28
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Combined CRISPRi/a-Based Chemical Genetic Screens Reveal that Rigosertib Is a Microtubule-Destabilizing Agent.
Mol. Cell, 68, 2017
8DWD
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BU of 8dwd by Molmil
Adenine glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with an AP site generated by the enzyme acting on purine
Descriptor: ACETATE ION, Adenine DNA glycosylase, CALCIUM ION, ...
Authors:Russelburg, L.P, Demir, M, David, S.S, Horvath, M.P.
Deposit date:2022-08-01
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
To Be Published
8DWF
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BU of 8dwf by Molmil
Glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with substrate adenine
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Adenine DNA glycosylase, ...
Authors:Russelburg, L.P, Demir, M, David, S.S, Horvath, M.P.
Deposit date:2022-08-01
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
To Be Published
5OVK
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BU of 5ovk by Molmil
Crystal structure MabA bound to NADPH from M. smegmatis
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase FabG, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kussau, T, Van Wyk, N, Viljoen, A, Olieric, V, Flipo, M, Kremer, L, Blaise, M.
Deposit date:2017-08-29
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA.
Acta Crystallogr D Struct Biol, 74, 2018
5UQR
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BU of 5uqr by Molmil
Crystal structure of 2-methylcitrate synthase from Aspergillus fumigatus
Descriptor: 2-methylcitrate synthase, mitochondrial, OXALOACETATE ION, ...
Authors:Schlachter, C, Chruszcz, M.
Deposit date:2017-02-08
Release date:2018-03-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Comparative studies of Aspergillus fumigatus 2-methylcitrate synthase and human citrate synthase.
Biol.Chem., 400, 2019
8DWE
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BU of 8dwe by Molmil
Adenine glycosylase MutY variant E43Q in complex with DNA containing d(8-oxo-G) paired with substrate purine
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Adenine DNA glycosylase, ...
Authors:Russelburg, L.P, Demir, M, David, S.S, Horvath, M.P.
Deposit date:2022-08-01
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
To Be Published

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