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PDB: 52259 results

7N97
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State 2 of TcdB and FZD2 at pH5
Descriptor: Frizzled-2, Toxin B
Authors:Jiang, M, Zhang, J.
Deposit date:2021-06-17
Release date:2022-03-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Structural Basis for Receptor Recognition of the Clostridium difficile Toxin B and its Dissociation upon Acidification
To Be Published
7N8X
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BU of 7n8x by Molmil
Partial C. difficile TcdB and CSPG4 fragment
Descriptor: Chondroitin sulfate proteoglycan 4, Toxin B
Authors:Jiang, M, Zhang, J.
Deposit date:2021-06-16
Release date:2022-03-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Basis for Receptor Recognition of Clostridium difficile Toxin B and its Dissociation upon Acidification
To Be Published
7V9H
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BU of 7v9h by Molmil
The BEN3 domain of protein Bend3
Descriptor: BEN domain-containing protein 3
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.692 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
1ZZP
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BU of 1zzp by Molmil
Solution structure of the F-actin binding domain of Bcr-Abl/c-Abl
Descriptor: Proto-oncogene tyrosine-protein kinase ABL1
Authors:Hantschel, O, Wiesner, S, Guttler, T, Mackereth, C.D, Rix, L.L.R, Mikes, Z, Dehne, J, Gorlich, D, Sattler, M, Superti-Furga, G.
Deposit date:2005-06-14
Release date:2005-08-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for the Cytoskeletal Association of Bcr-Abl/c-Abl.
Mol.Cell, 19, 2005
224L
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BU of 224l by Molmil
THE ENERGETIC COST AND THE STRUCTURAL CONSEQUENCES OF BURYING A HYDROXYL GROUP WITHIN THE CORE OF A PROTEIN DETERMINED FROM ALA TO SER AND VAL TO THR SUBSTITUTIONS IN T4 LYSOZYME
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Blaber, M, Matthews, B.W.
Deposit date:1993-09-27
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme.
Biochemistry, 32, 1993
5IAX
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BU of 5iax by Molmil
Mechanistic and Structural Analysis of Substrate Recognition and Cofactor Binding by an Unusual Bacterial Prolyl Hydroxylase - Co-BaP4H-PPG
Descriptor: 2-OXOGLUTARIC ACID, BETA-MERCAPTOETHANOL, COBALT (II) ION, ...
Authors:Schnicker, N.J, Dey, M.
Deposit date:2016-02-22
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns.
J.Biol.Chem., 291, 2016
5IBB
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BU of 5ibb by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2016-02-22
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res., 44, 2016
7V9F
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BU of 7v9f by Molmil
Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA
Descriptor: BEN domain-containing protein 3, CITRIC ACID, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), ...
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
7VGP
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Hen egg lysozyme refolded after denaturation at acidic pH
Descriptor: Lysozyme C, SODIUM ION
Authors:Oda, M, Ikura, T, Ito, N.
Deposit date:2021-09-17
Release date:2022-02-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.
Protein J., 41, 2022
5IB8
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BU of 5ib8 by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2016-02-22
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res., 44, 2016
7VGO
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BU of 7vgo by Molmil
Hen egg lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Oda, M, Ikura, T, Ito, N.
Deposit date:2021-09-17
Release date:2022-02-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.
Protein J., 41, 2022
5IMP
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BU of 5imp by Molmil
Crystal structure of N299A Aspergillus terreus aristolochene synthase complexed with (1S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)decahydroquinolizin-5-ium
Descriptor: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium, Aristolochene synthase, GLYCEROL, ...
Authors:Chen, M, Christianson, D.W.
Deposit date:2016-03-06
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.038 Å)
Cite:Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase.
Biochemistry, 55, 2016
7N9Q
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BU of 7n9q by Molmil
State 3 of TcdB and FZD2 at pH5
Descriptor: Toxin B
Authors:Jiang, M, Zhang, J.
Deposit date:2021-06-18
Release date:2022-03-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural Basis for Receptor Recognition of Clostridium difficile Toxin B and its Dissociation upon Acidification
To Be Published
5IN2
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BU of 5in2 by Molmil
Crystal structure of extra cellular Cu/Zn Superoxide Dismutase from Onchocerca volvulus at 1.5 Angstrom; Insight into novel binding site and new inhibitors
Descriptor: AZIDE ION, CHLORIDE ION, COPPER (II) ION, ...
Authors:Moustafa, A, Betzel, C, Perbandt, M.
Deposit date:2016-03-07
Release date:2017-03-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of extracellular Cu/Zn Superoxide Dismutase from Onchocerca volvulus at 1.5 Angstrom; Insight into novel binding site and new inhibitors
To Be Published
264D
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BU of 264d by Molmil
THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE A-TRACT DNA DODECAMER D(CGCAAATTTGCG) COMPLEXED WITH THE MINOR-GROOVE-BINDING DRUG HOECHST 33258
Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3')
Authors:Vega, M.C, Garcia-Saez, I, Aymami, J, Eritja, R, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Coll, M.
Deposit date:1994-09-22
Release date:1995-03-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258.
Eur.J.Biochem., 222, 1994
7VFD
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BU of 7vfd by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFG
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BU of 7vfg by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
5INT
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BU of 5int by Molmil
Crystal structure of the C-terminal Domain of Coenzyme A biosynthesis bifunctional protein CoaBC
Descriptor: Phosphopantothenate--cysteine ligase
Authors:Nocek, B, Zhou, M, Grimshaw, S, Kim, Y, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-03-07
Release date:2016-04-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the C-terminal Domain of Coenzyme A biosynthesis bifunctional protein CoaBC
To Be Published
2X99
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BU of 2x99 by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with NADPH
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Angelucci, F, Dimastrogiovanni, D, Boumis, G, Brunori, M, Miele, A.E, Saccoccia, F, Bellelli, A.
Deposit date:2010-03-15
Release date:2010-07-21
Last modified:2017-07-12
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mapping the Catalytic Cycle of Schistosoma Mansoni Thioredoxin Glutathione Reductase by X-Ray Crystallography
J.Biol.Chem., 285, 2010
1M6K
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BU of 1m6k by Molmil
Structure of the OXA-1 class D beta-lactamase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, beta-lactamase OXA-1
Authors:Sun, T, Nukaga, M, Mayama, K, Braswell, E.H, Knox, J.R.
Deposit date:2002-07-16
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Comparison of beta-lactamases of classes A and D: 1.5A crystallographic structure of the class D OXA-1 oxacillinase
PROTEIN SCI., 12, 2003
7VFE
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BU of 7vfe by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFH
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BU of 7vfh by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFF
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BU of 7vff by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7NFZ
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BU of 7nfz by Molmil
Crystal structure of haloalkane dehalogenase LinB57 mutant (H272F) from Sphingobium japonicum UT26
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, ...
Authors:Marek, M.
Deposit date:2021-02-08
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Crystal structure of haloalkane dehalogenase LinB57 mutant (H272F) from Sphingobium japonicum UT26
To Be Published
2X72
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CRYSTAL STRUCTURE OF THE CONSTITUTIVELY ACTIVE E113Q,D2C,D282C RHODOPSIN MUTANT WITH BOUND GALPHACT PEPTIDE.
Descriptor: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, ACETATE ION, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, ...
Authors:Standfuss, J, Edwards, P.C, Dantona, A, Fransen, M, Xie, G, Oprian, D.D, Schertler, G.F.X.
Deposit date:2010-02-22
Release date:2011-03-16
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structural Basis of Agonist Induced Activation in Constitutively Active Rhodopsin
Nature, 471, 2011

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