Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51964 results

1V3Y
DownloadVisualize
BU of 1v3y by Molmil
The crystal structure of peptide deformylase from Thermus thermophilus HB8
Descriptor: Peptide deformylase
Authors:Kamo, M, Kudo, N, Lee, W.C, Ito, K, Motoshim, H, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-07
Release date:2004-12-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The crystal structure of peptide deformylase from Thermus thermophilus HB8
to be published
4MZ6
DownloadVisualize
BU of 4mz6 by Molmil
Structure of importin-alpha: dUTPase S11E NLS mutant complex
Descriptor: Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial, Importin subunit alpha-1
Authors:Marfori, M, Rona, G, Vertessy, B.G, Kobe, B.
Deposit date:2013-09-29
Release date:2013-11-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Phosphorylation adjacent to the nuclear localization signal of human dUTPase abolishes nuclear import: structural and mechanistic insights.
Acta Crystallogr.,Sect.D, 69, 2013
1V50
DownloadVisualize
BU of 1v50 by Molmil
Solution structure of phosphorylated N-terminal fragment of S100C/A11 protein
Descriptor: Calgizzarin
Authors:Kouno, T, Mizuguchi, M, Sakaguchi, M, Makino, E, Huh, N, Kawano, K.
Deposit date:2003-11-20
Release date:2005-03-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Study on structure-activity relationship between the N-terminal region of S100C protein and its function
Peptide Science, 40, 2003
1V54
DownloadVisualize
BU of 1v54 by Molmil
Bovine heart cytochrome c oxidase at the fully oxidized state
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S.
Deposit date:2003-11-21
Release date:2003-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
6KBC
DownloadVisualize
BU of 6kbc by Molmil
Crystal structure of CghA with Sch210972
Descriptor: (2S)-3-[(2S,4E)-4-[[(1R,2S,4aR,6S,8R,8aS)-2-[(E)-but-2-en-2-yl]-6,8-dimethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid, CghA
Authors:Hara, K, Hashimoto, H, Maeda, N, Sato, M, Watanabe, K.
Deposit date:2019-06-24
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Catalytic mechanism and endo-to-exo selectivity reversion of an octalin-forming natural Diels-Alderase
Nat Catal, 2021
1UUE
DownloadVisualize
BU of 1uue by Molmil
a-SPECTRIN SH3 DOMAIN (V44T, D48G MUTANT)
Descriptor: SPECTRIN ALPHA CHAIN
Authors:Vega, M.C, Fernandez, A, Wilmanns, M, Serrano, L.
Deposit date:2003-12-18
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Solvation in Protein Folding Analysis: Combination of Theoretical and Experimental Approaches
Proc.Natl.Acad.Sci.USA, 101, 2004
3S68
DownloadVisualize
BU of 3s68 by Molmil
Rat COMT in complex with SAM and Tolcapone at 1.85A, P3221, Rfree=22.0
Descriptor: CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
Deposit date:2011-05-25
Release date:2012-02-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Catechol-O-methyltransferase in complex with substituted 3'-deoxyribose bisubstrate inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
3SA0
DownloadVisualize
BU of 3sa0 by Molmil
Complex of ERK2 with norathyriol
Descriptor: Mitogen-activated protein kinase 1, SULFATE ION, norathyriol
Authors:Kurinov, I, Malakhova, M.
Deposit date:2011-06-02
Release date:2011-12-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5947 Å)
Cite:Norathyriol Suppresses Skin Cancers Induced by Solar Ultraviolet Radiation by Targeting ERK Kinases.
Cancer Res., 72, 2012
1SIO
DownloadVisualize
BU of 1sio by Molmil
Structure of Kumamolisin-As complexed with a covalently-bound inhibitor, AcIPF
Descriptor: Ace-ILE-PRO-PHL peptide inhibitor, CALCIUM ION, SULFATE ION, ...
Authors:Li, M, Wlodawer, A, Gustchina, A, Tsuruoka, N, Ashida, M, Minakata, H, Oyama, H, Oda, K, Nishino, T, Nakayama, T.
Deposit date:2004-03-01
Release date:2004-03-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
J.Biol.Chem., 279, 2004
1SNN
DownloadVisualize
BU of 1snn by Molmil
3,4-dihydroxy-2-butanone 4-phosphate synthase from Methanococcus jannaschii
Descriptor: 3,4-dihydroxy-2-butanone 4-phosphate synthase, CALCIUM ION, RIBULOSE-5-PHOSPHATE, ...
Authors:Steinbacher, S, Schiffmann, S, Huber, R, Bacher, A, Fischer, M.
Deposit date:2004-03-11
Release date:2004-07-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Metal sites in 3,4-dihydroxy-2-butanone 4-phosphate synthase from Methanococcus jannaschii in complex with the substrate ribulose 5-phosphate.
Acta Crystallogr.,Sect.D, 60, 2004
3SBO
DownloadVisualize
BU of 3sbo by Molmil
Structure of E.coli GDH from native source
Descriptor: CHLORIDE ION, NADP-specific glutamate dehydrogenase
Authors:Gee, C.L, Zubieta, C, Echols, N, Totir, M.
Deposit date:2011-06-06
Release date:2012-03-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.204 Å)
Cite:Macro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization.
Plos One, 7, 2012
4MTY
DownloadVisualize
BU of 4mty by Molmil
Structure at 1A resolution of a helical aromatic foldamer-protein complex.
Descriptor: 4-(HYDROXYMERCURY)BENZOIC ACID, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Ogayone, T, Buratto, J, Langlois D'Estaintot, B, Stupfel, M, Granier, T, Gallois, B, Huc, Y.
Deposit date:2013-09-20
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of a complex formed by a protein and a helical aromatic oligoamide foldamer at 2.1 a resolution.
Angew.Chem.Int.Ed.Engl., 53, 2014
1SQB
DownloadVisualize
BU of 1sqb by Molmil
Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin
Descriptor: Cytochrome b, Cytochrome c1, heme protein, ...
Authors:Esser, L, Quinn, B, Li, Y.F, Zhang, M, Elberry, M, Yu, L, Yu, C.A, Xia, D.
Deposit date:2004-03-18
Release date:2004-09-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Crystallographic studies of quinol oxidation site inhibitors: a modified classification of inhibitors for the cytochrome bc(1) complex
J.Mol.Biol., 341, 2004
3SHJ
DownloadVisualize
BU of 3shj by Molmil
Proteasome in complex with hydroxyurea derivative HU10
Descriptor: 1-hydroxy-1-[(2R)-4-{3-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yloxy]phenyl}but-3-yn-2-yl]urea, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Proteasome component C1, ...
Authors:Gallastegui, N, Beck, P, Arciniega, M, Hillebrand, S, Huber, R, Groll, M.
Deposit date:2011-06-16
Release date:2011-12-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Hydroxyureas as noncovalent proteasome inhibitors.
Angew.Chem.Int.Ed.Engl., 51, 2012
3ASX
DownloadVisualize
BU of 3asx by Molmil
Human Squalene synthase in complex with 1-{4-[{4-chloro-2-[(2-chlorophenyl)(hydroxy)methyl]phenyl}(2,2-dimethylpropyl)amino]-4-oxobutanoyl}piperidine-3-carboxylic acid
Descriptor: (3R)-1-{4-[{4-chloro-2-[(S)-(2-chlorophenyl)(hydroxy)methyl]phenyl}(2,2-dimethylpropyl)amino]-4-oxobutanoyl}piperidine-3-carboxylic acid, PHOSPHATE ION, Squalene synthase
Authors:Shimizu, H, Suzuki, M, Katakura, S, Yamazaki, K, Higashihashi, N, Ichikawa, M, Yokomizo, A, Itoh, M, Sugita, K, Usui, H.
Deposit date:2010-12-22
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of a new 2-aminobenzhydrol template for highly potent squalene synthase inhibitors
Bioorg.Med.Chem., 19, 2011
3RUO
DownloadVisualize
BU of 3ruo by Molmil
Complex structure of HevB EV93 main protease 3C with Rupintrivir (AG7088)
Descriptor: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER, CHLORIDE ION, HEVB EV93 3C PROTEASE, ...
Authors:Kaczmarska, Z, Janowski, R, Costenaro, L, Coutard, B, Norder, H, Canard, B, Coll, M.
Deposit date:2011-05-05
Release date:2011-09-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis for Antiviral Inhibition of the Main Protease, 3C, from Human Enterovirus 93.
J.Virol., 85, 2011
3SLF
DownloadVisualize
BU of 3slf by Molmil
Crystal structure of BA2930 in complex with AcCoA and uracil
Descriptor: ACETYL COENZYME *A, Aminoglycoside N3-acetyltransferase, CHLORIDE ION, ...
Authors:Klimecka, M.M, Chruszcz, M, Porebski, P.J, Cymborowski, M, Anderson, W, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-06-24
Release date:2011-07-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of BA2930 in complex with AcCoA and uracil
TO BE PUBLISHED
3AZ4
DownloadVisualize
BU of 3az4 by Molmil
Crystal structure of Co/O-HEWL
Descriptor: CHLORIDE ION, COBALT (II) ION, Lysozyme C
Authors:Abe, S, Tsujimoto, M, Yoneda, K, Ohba, M, Hikage, T, Takano, M, Kitagawa, S, Ueno, T.
Deposit date:2011-05-20
Release date:2012-05-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles
Small, 8, 2012
3AZ5
DownloadVisualize
BU of 3az5 by Molmil
Crystal structure of Pt/O-HEWL
Descriptor: Lysozyme C, PLATINUM (II) ION
Authors:Abe, S, Tsujimoto, M, Yoneda, K, Ohba, M, Hikage, T, Takano, M, Kitagawa, S, Ueno, T.
Deposit date:2011-05-20
Release date:2012-05-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles
Small, 8, 2012
3AZ6
DownloadVisualize
BU of 3az6 by Molmil
Crystal structure of Co/T-HEWL
Descriptor: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ...
Authors:Abe, S, Tsujimoto, M, Yoneda, K, Ohba, M, Hikage, T, Takano, M, Kitagawa, S, Ueno, T.
Deposit date:2011-05-20
Release date:2012-05-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles
Small, 8, 2012
3AZO
DownloadVisualize
BU of 3azo by Molmil
Crystal structure of puromycin hydrolase
Descriptor: Aminopeptidase, SULFATE ION
Authors:Matoba, Y, Sugiyama, M.
Deposit date:2011-05-27
Release date:2011-07-27
Last modified:2011-09-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3WNO
DownloadVisualize
BU of 3wno by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltooctaose
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WHX
DownloadVisualize
BU of 3whx by Molmil
Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex
Descriptor: 7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid, mAb Fab H fragment, mAb Fab L fragment
Authors:Sugahara, M, Ago, H, Saino, H, Miyano, M.
Deposit date:2013-09-03
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
3EFZ
DownloadVisualize
BU of 3efz by Molmil
Crystal Structure of a 14-3-3 protein from cryptosporidium parvum (cgd1_2980)
Descriptor: 1,2-ETHANEDIOL, 14-3-3 protein
Authors:Wernimont, A.K, Dong, A, Qiu, W, Lew, J, Wasney, G.A, Vedadi, M, Kozieradzki, I, Zhao, Y, Ren, H, Alam, Z, Lin, Y.H, Sundstrom, M, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Hui, R, Brokx, S, Structural Genomics Consortium (SGC)
Deposit date:2008-09-10
Release date:2008-09-23
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Characterization of 14-3-3 proteins from Cryptosporidium parvum.
Plos One, 6, 2011
4Q4Q
DownloadVisualize
BU of 4q4q by Molmil
tRNA-Guanine Transglycosylase (TGT) in Complex with 2-[(Thiophen-2-ylmethyl)amino]-1H,7H,8H-imidazo[4,5-g]quinazolin-8-one
Descriptor: 2-[(thiophen-2-ylmethyl)amino]-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one, GLYCEROL, Queuine tRNA-ribosyltransferase, ...
Authors:Neeb, M, Heine, A, Klebe, G.
Deposit date:2014-04-15
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Beyond Affinity: Enthalpy-Entropy Factorization Unravels Complexity of a Flat Structure-Activity Relationship for Inhibition of a tRNA-Modifying Enzyme.
J.Med.Chem., 57, 2014

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon