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PDB: 51964 results

3D1G
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BU of 3d1g by Molmil
Structure of a small molecule inhibitor bound to a DNA sliding clamp
Descriptor: DNA polymerase III subunit beta, [(5R)-5-(2,3-dibromo-5-ethoxy-4-hydroxybenzyl)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetic acid
Authors:Georgescu, R.E, Yurieva, O, Seung-Sup, K, Kuriyan, J, Kong, X.-P, O'Donnell, M.
Deposit date:2008-05-05
Release date:2008-07-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4J5D
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BU of 4j5d by Molmil
Human Cyclophilin D Complexed with an Inhibitor
Descriptor: 1-(4-aminobenzyl)-3-{2-[(2R)-2-(2-bromophenyl)pyrrolidin-1-yl]-2-oxoethyl}urea, Peptidyl-prolyl cis-trans isomerase F, mitochondrial
Authors:Gelin, M, Colliandre, L, Bessin, Y, Guichou, J.F.
Deposit date:2013-02-08
Release date:2014-02-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities.
Nat Commun, 7, 2016
1KDI
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BU of 1kdi by Molmil
REDUCED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Gotowda, M, Hamada, K, Kohzuma, T, Yoshizaki, F, Sugimura, Y, Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1KQF
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BU of 1kqf by Molmil
FORMATE DEHYDROGENASE N FROM E. COLI
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CARDIOLIPIN, FORMATE DEHYDROGENASE, ...
Authors:Jormakka, M, Tornroth, S, Byrne, B, Iwata, S.
Deposit date:2002-01-05
Release date:2002-03-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis of proton motive force generation: structure of formate dehydrogenase-N.
Science, 295, 2002
4G76
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BU of 4g76 by Molmil
Structure of PaeM, a colicin M-like bacteriocin produced by Pseudomonas aeruginosa
Descriptor: Phosphodiesterase
Authors:Touze, T, Graille, M, Mengin-Lecreulx, D.
Deposit date:2012-07-20
Release date:2012-09-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.385 Å)
Cite:Functional and Structural Characterization of PaeM, a Colicin M-like Bacteriocin Produced by Pseudomonas aeruginosa.
J.Biol.Chem., 287, 2012
4JQ9
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BU of 4jq9 by Molmil
Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex
Descriptor: CHLORIDE ION, Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tietzel, M, Neumann, P, Meyer, D, Ficner, R, Tittmann, K.
Deposit date:2013-03-20
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex
TO BE PUBLISHED
1KEU
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BU of 1keu by Molmil
The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium with dTDP-D-glucose bound
Descriptor: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, dTDP-D-glucose 4,6-dehydratase
Authors:Allard, S.T.M, Beis, K, Giraud, M.-F, Hegeman, A.D, Gross, J.W, Whitfield, C, Graninger, M, Messner, P, Allen, A.G, Naismith, J.H.
Deposit date:2001-11-17
Release date:2002-01-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Toward a structural understanding of the dehydratase mechanism.
Structure, 10, 2002
6R9T
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BU of 6r9t by Molmil
Cryo-EM structure of autoinhibited human talin-1
Descriptor: Talin-1
Authors:Dedden, D, Schumacher, S, Zacharias, M, Biertumpfel, C, Mizuno, N.
Deposit date:2019-04-04
Release date:2019-10-16
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:The Architecture of Talin1 Reveals an Autoinhibition Mechanism.
Cell, 179, 2019
4J61
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BU of 4j61 by Molmil
Crystal structure of Ribonuclease A soaked in 40% Cyclopentanone: One of twelve in MSCS set
Descriptor: Ribonuclease pancreatic, SULFATE ION, cyclopentanone
Authors:Kearney, B.M, Dechene, M, Swartz, P.D, Mattos, C.
Deposit date:2013-02-11
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:DRoP: A program for analysis of water structure on protein surfaces
to be published
3CSK
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BU of 3csk by Molmil
Structure of DPP III from Saccharomyces cerevisiae
Descriptor: MAGNESIUM ION, Probable dipeptidyl-peptidase 3, ZINC ION
Authors:Baral, P.K, Jajcanin, N, Deller, S, Macheroux, P, Abramic, M, Gruber, K.
Deposit date:2008-04-10
Release date:2008-06-10
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding.
J.Biol.Chem., 283, 2008
4ZQM
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BU of 4zqm by Molmil
Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Mycobacterium tuberculosis in the complex with XMP and NAD
Descriptor: Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, XANTHOSINE-5'-MONOPHOSPHATE
Authors:Kim, Y, Maltseva, N, Makowska-Grzyska, M, Gu, M, Kavitha, M, Hedstrom, L, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-05-10
Release date:2015-06-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Mycobacterium tuberculosis IMPDH in Complexes with Substrates, Products and Antitubercular Compounds.
Plos One, 10, 2015
4J66
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BU of 4j66 by Molmil
Crystal structure of Ribonuclease A soaked in 25% Dimethyl sulfoxide: One of twelve in MSCS set
Descriptor: DIMETHYL SULFOXIDE, Ribonuclease pancreatic, SULFATE ION
Authors:Kearney, B.M, Dechene, M, Swartz, P.D, Mattos, C.
Deposit date:2013-02-11
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.039 Å)
Cite:DRoP: A program for analysis of water structure on protein surfaces
to be published
2CB1
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BU of 2cb1 by Molmil
Crystal Structure of O-actetyl Homoserine Sulfhydrylase From Thermus Thermophilus HB8,OAH2.
Descriptor: O-ACETYL HOMOSERINE SULFHYDRYLASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Imagawa, T, Utsunomiya, H, Tsuge, H, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S.
Deposit date:2005-12-28
Release date:2007-01-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of O-Acetyl Homoserine Sulfhydrylase
To be Published
6JJU
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BU of 6jju by Molmil
Structure of Ca2+ ATPase
Descriptor: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Inoue, M, Sakuta, N, Watanabe, S, Inaba, K.
Deposit date:2019-02-27
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
6RBP
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BU of 6rbp by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Descriptor: 9-(4-azidobutyl)purin-6-amine, CITRIC ACID, NAD kinase 1
Authors:Gelin, M, Labesse, G.
Deposit date:2019-04-11
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.473 Å)
Cite:From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis., 6, 2020
1KFB
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BU of 1kfb by Molmil
CRYSTAL STRUCTURE OF ALPHAT183V MUTANT OF TRYPTOPHAN SYNTHASE FROM SALMONELLA TYPHIMURIUM WITH Indole Glycerol Phosphate
Descriptor: INDOLE-3-GLYCEROL PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, TRYPTOPHAN SYNTHASE ALPHA CHAIN, ...
Authors:Kulik, V, Weyand, M, Siedel, R, Niks, D, Arac, D, Dunn, M.F, Schlichting, I.
Deposit date:2001-11-20
Release date:2003-01-07
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:On the Role of alphaTHR183 in the Allosteric Regulation and Catalytic Mechanism of Tryptophan Synthase
J.Mol.Biol., 324, 2002
6RBY
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BU of 6rby by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Descriptor: 4-(6-azanyl-8-bromanyl-purin-9-yl)butan-1-ol, CITRIC ACID, NAD kinase 1
Authors:Gelin, M, Labesse, G.
Deposit date:2019-04-11
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.312 Å)
Cite:From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis., 6, 2020
1KSM
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BU of 1ksm by Molmil
AVERAGE NMR SOLUTION STRUCTURE OF CA LN CALBINDIN D9K
Descriptor: LANTHANUM (III) ION, VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN
Authors:Bertini, I, Donaire, A, Luchinat, C, Piccioli, M, Poggi, L, Parigi, G, Jimenez, B.
Deposit date:2002-01-14
Release date:2002-01-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k.
J.Biomol.NMR, 21, 2001
6JKC
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BU of 6jkc by Molmil
Crystal structure of tetrameric PepTSo2 in P4212 space group
Descriptor: Proton:oligopeptide symporter POT family
Authors:Nagamura, R, Fukuda, M, Ishitani, R, Nureki, O.
Deposit date:2019-02-28
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2.
Acta Crystallogr.,Sect.F, 75, 2019
1KFN
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BU of 1kfn by Molmil
Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants
Descriptor: MAJOR OUTER MEMBRANE LIPOPROTEIN
Authors:Liu, J, Cao, W, Lu, M.
Deposit date:2001-11-21
Release date:2002-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants.
J.Mol.Biol., 318, 2002
4HD7
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BU of 4hd7 by Molmil
Crystal Structure of Tyrosinase from Bacillus megaterium V218G mutant soaked in CuSO4
Descriptor: COPPER (II) ION, Tyrosinase
Authors:Goldfeder, M, Kanteev, M, Adir, N, Fishman, A.
Deposit date:2012-10-02
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Influencing the monophenolase/diphenolase activity ratio in tyrosinase.
Biochim.Biophys.Acta, 1834, 2013
6G8M
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BU of 6g8m by Molmil
Yeast 20S proteasome in complex with Cystargolide B Derivative 1
Descriptor: (2~{S},3~{R})-4-[[(2~{S})-3-methyl-1-[[(2~{S})-3-methyl-1-oxidanylidene-1-phenylmethoxy-butan-2-yl]amino]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanyl-4-oxidanylidene-2-propan-2-yl-butanoic acid, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Groll, M, Tello-Aburto, R.
Deposit date:2018-04-09
Release date:2018-09-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Design, synthesis, and evaluation of cystargolide-based beta-lactones as potent proteasome inhibitors.
Eur J Med Chem, 157, 2018
3OK4
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BU of 3ok4 by Molmil
Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects
Descriptor: ANA, RNA
Authors:Ovaere, M, Van Meervelt, L.
Deposit date:2010-08-24
Release date:2011-11-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.149 Å)
Cite:Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects
To be Published
3D6W
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BU of 3d6w by Molmil
LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, MAGNESIUM ION, ...
Authors:Osipiuk, J, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-05-20
Release date:2008-07-15
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray crystal structure of LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.
To be Published
3U4R
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BU of 3u4r by Molmil
Novel HCV NS5B polymerase Inhibitors: Discovery of Indole C2 Acyl sulfonamides
Descriptor: 1-[(2-aminopyridin-4-yl)methyl]-5-chloro-N-({3-[(methylsulfonyl)amino]phenyl}sulfonyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxamide, RNA-directed RNA polymerase
Authors:Anilkumar, G.N, Selyutin, O, Rosenblum, S.B, Zeng, Q, Jiang, Y, Chan, T.-Y, Pu, H, Wang, L, Bennett, F, Chen, K.X, Lesburg, C.A, Duca, J.S, Gavalas, S, Huang, Y, Pinto, P, Sannagrahi, M, Velazquez, F, Venkataraman, S, Vilbubhan, B, Agrawal, S, Ferrari, E, Jiang, C.-K, Huang, H.-C, Shih, N.-Y, Njoroge, F.G, Kozlowski, J.A.
Deposit date:2011-10-10
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:II. Novel HCV NS5B polymerase inhibitors: Discovery of indole C2 acyl sulfonamides.
Bioorg.Med.Chem.Lett., 22, 2012

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