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PDB: 51689 件

6LLZ
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Crystal Structure of Fagopyrum esculentum M UGT708C1 complexed with UDP-glucose
分子名称: UDP-glycosyltransferase 708C1, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Wang, X, Liu, M.
登録日2019-12-24
公開日2020-09-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.006 Å)
主引用文献Crystal Structures of theC-Glycosyltransferase UGT708C1 from Buckwheat Provide Insights into the Mechanism ofC-Glycosylation.
Plant Cell, 32, 2020
6U5F
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CryoEM Structure of Pyocin R2 - precontracted - collar
分子名称: Collar PA0615, Sheath PA0622, Tube PA0623
著者Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
登録日2019-08-27
公開日2020-04-15
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
7SF0
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Crystal structure of Vaccinia Virus decapping enzyme D9 in complex with trinucleotide substrate
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, DNA repair NTP-phosphohydrolase, MAGNESIUM ION, ...
著者Peters, J.K, Tibble, R.W, Warminski, M, Jemielity, J, Gross, J.D.
登録日2021-10-02
公開日2022-03-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.95000446 Å)
主引用文献Structure of the poxvirus decapping enzyme D9 reveals its mechanism of cap recognition and catalysis.
Structure, 30, 2022
1WFX
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Crystal Structure of APE0204 from Aeropyrum pernix
分子名称: CHLORIDE ION, Probable RNA 2'-phosphotransferase, ZINC ION
著者Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-27
公開日2004-11-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the RNA 2'-Phosphotransferase from Aeropyrum pernix K1
J.Mol.Biol., 348, 2005
7NIG
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14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1008
分子名称: 14-3-3 protein sigma, 2-bromanyl-4-imidazol-1-yl-benzaldehyde, CALCIUM ION, ...
著者Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
登録日2021-02-12
公開日2021-06-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
6OQR
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E. coli ATP Synthase ADP State 1a
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Stewart, A.G, Walshe, J.L, Sobti, M.
登録日2019-04-29
公開日2020-06-03
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures provide insight into how E. coli F1FoATP synthase accommodates symmetry mismatch.
Nat Commun, 11, 2020
7NKU
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diazaborine bound Drg1(AFG2)
分子名称: 6-METHYL-2(PROPANE-1-SULFONYL)-2H-THIENO[3,2-D][1,2,3]DIAZABORININ-1-OL, ATPase family gene 2 protein, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
著者Prattes, M, Bergler, H, Haselbach, D.
登録日2021-02-19
公開日2021-06-23
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine.
Nat Commun, 12, 2021
6LU8
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Cryo-EM structure of a human pre-60S ribosomal subunit - state A
分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Liang, X, Zuo, M, Zhang, Y, Li, N, Ma, C, Dong, M, Gao, N.
登録日2020-01-26
公開日2020-08-26
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Structural snapshots of human pre-60S ribosomal particles before and after nuclear export.
Nat Commun, 11, 2020
7NJA
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14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1006
分子名称: 14-3-3 protein sigma, CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, ...
著者Wolter, M, Dijck, L.v, Cossar, P.J, Ottmann, C.
登録日2021-02-16
公開日2021-06-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions.
J.Am.Chem.Soc., 143, 2021
4OVT
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BU of 4ovt by Molmil
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTERIUM ANTHROPI (Oant_3902), TARGET EFI-510153, WITH BOUND L-FUCONATE
分子名称: 6-deoxy-L-galactonic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2013-12-14
公開日2014-01-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
8OOY
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Pol I bound to extended and displaced DNA section - open conformation
分子名称: DNA polymerase I, Displacing Primer, Extending Primer, ...
著者Botto, M, Borsellini, A, Lamers, M.H.
登録日2023-04-06
公開日2023-08-09
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献A four-point molecular handover during Okazaki maturation.
Nat.Struct.Mol.Biol., 30, 2023
1WHV
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Solution structure of the RNA binding domain from hypothetical protein BAB23382
分子名称: poly(A)-specific ribonuclease
著者Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the RNA binding domain from hypothetical protein BAB23382
To be Published
1X1V
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Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
分子名称: HEXANE-1,6-DIOL, ZINC ION, lectin, ...
著者Singh, D.D, Saikrishnan, K, Kumar, P, Surolia, A, Sekar, K, Vijayan, M.
登録日2005-04-14
公開日2005-11-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Unusual sugar specificity of banana lectin from Musa paradisiaca and its probable evolutionary origin. Crystallographic and modelling studies
Glycobiology, 15, 2005
6M0S
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3.6A Yeast Vo state3 prime
分子名称: Uncharacterized protein YPR170W-B, V-type proton ATPase subunit a, vacuolar isoform, ...
著者Roh, S.H, Shekhar, M, Pintilie, G, Chipot, C, Wilkens, S, SIngharoy, A, Chiu, W.
登録日2020-02-22
公開日2020-11-04
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM and MD infer water-mediated proton transport and autoinhibition mechanisms of V o complex.
Sci Adv, 6, 2020
1J10
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beta-amylase from Bacillus cereus var. mycoides in complex with GGX
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-xylopyranose, ...
著者Oyama, T, Miyake, H, Kusunoki, M, Nitta, Y.
登録日2002-11-25
公開日2003-06-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of beta-Amylase from Bacillus cereus var. mycoides in Complexes with Substrate Analogs and Affinity-Labeling Reagents
J.BIOCHEM.(TOKYO), 133, 2003
6I2G
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ALFA-tag binding nanobody (NbALFA) bound to ALFA-tag peptide.
分子名称: ALFA nanobody, N7P-SER-ARG-LEU-GLU-GLU-GLU-LEU-ARG-ARG-ARG-LEU-THR-GLU-LPD, SULFATE ION
著者Martinez-Carranza, M, Stenmark, P.
登録日2018-11-01
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The ALFA-tag is a highly versatile tool for nanobody-based bioscience applications.
Nat Commun, 10, 2019
6M3Q
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BU of 6m3q by Molmil
Crystal structure of AnkB/beta4-spectrin complex
分子名称: Ankyrin-2, Spectrin beta chain
著者Li, J, Chen, K, Zhu, R, Zhang, M.
登録日2020-03-04
公開日2020-05-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.436 Å)
主引用文献Structural Basis Underlying Strong Interactions between Ankyrins and Spectrins.
J.Mol.Biol., 432, 2020
6O8Q
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HUaa 19bp SYM DNA pH 4.5
分子名称: DNA (57-MER), DNA-binding protein HU-alpha
著者Remesh, S.G, Hammel, M.
登録日2019-03-11
公開日2020-03-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.216 Å)
主引用文献Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling.
Nat Commun, 11, 2020
1J21
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Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with ATP and citrulline
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Argininosuccinate Synthetase, CITRULLINE
著者Goto, M, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-12-24
公開日2003-04-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of argininosuccinate synthetase in enzyme-ATP-substrates and enzyme-AMP-product forms
J.Biol.Chem., 278, 2003
6I93
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R2-like ligand-binding oxidase G68L mutant with aerobically reconstituted Fe/Fe cofactor
分子名称: FE (III) ION, OCTANOIC ACID (CAPRYLIC ACID), Ribonucleotide reductase small subunit
著者Griese, J.J, Hogbom, M.
登録日2018-11-22
公開日2019-10-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.
J.Biol.Chem., 294, 2019
8B9X
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Chimeric protein of human UFM1 E3 ligase, UFL1, and DDRGK1
分子名称: CHLORIDE ION, DDRGK domain-containing protein 1,E3 UFM1-protein ligase 1
著者Wiener, R, Isupov, M, banerjee, S.
登録日2022-10-10
公開日2023-10-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.066 Å)
主引用文献Structural study of UFL1-UFC1 interaction uncovers the role of UFL1 N-terminal helix in ufmylation.
Embo Rep., 24, 2023
6M4Q
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Cytochrome P450 monooxygenase StvP2 substrate-free structure
分子名称: Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
著者Sun, G, Hu, C, Mei, Q, Luo, M, Chen, X, Li, Z, Liu, Y, Deng, Z, Zhang, Z, Sun, Y.
登録日2020-03-08
公開日2020-08-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Uncovering the cytochrome P450-catalyzed methylenedioxy bridge formation in streptovaricins biosynthesis.
Nat Commun, 11, 2020
7PHP
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BU of 7php by Molmil
Structure of Multidrug and Toxin Compound Extrusion (MATE) transporter NorM by NabFab-fiducial assisted cryo-EM
分子名称: Anti-Fab nanobody, Multidrug resistance protein NorM, NabFab HC, ...
著者Bloch, J.S, Mukherjee, S, Kowal, J, Niederer, M, Pardon, E, Steyaert, J, Kossiakoff, A.A, Locher, K.P.
登録日2021-08-18
公開日2021-09-01
最終更新日2021-12-01
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Development of a universal nanobody-binding Fab module for fiducial-assisted cryo-EM studies of membrane proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
1X4C
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Solution structure of RRM domain in splicing factor 2
分子名称: Splicing factor, arginine/serine-rich 1
著者He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-14
公開日2005-11-14
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of RRM domain in splicing factor 2
To be Published
6RFX
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Crystal structure of Eis2 from Mycobacterium abscessus
分子名称: ACETATE ION, CITRIC ACID, Eis2, ...
著者Blaise, M, Kremer, L, Olieric, V, Alsarraf, H, Ung, K.L.
登録日2019-04-16
公開日2019-07-10
最終更新日2019-11-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the aminoglycosides N-acetyltransferase Eis2 from Mycobacterium abscessus.
Febs J., 286, 2019

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件を2024-09-04に公開中

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