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PDB: 51630 件

6B5T
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Structure of PfCSP peptide 29 with human antibody CIS42
分子名称: AMMONIUM ION, CIS42 Fab Heavy chain, CIS42 Fab Light chain, ...
著者Pancera, M, Weidle, C.
登録日2017-09-29
公開日2018-03-21
最終更新日2018-04-25
実験手法X-RAY DIFFRACTION (2.222 Å)
主引用文献A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
7PQ7
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Crystal structure of Campylobacter jejuni DsbA1
分子名称: TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, Thiol:disulfide interchange protein DsbA
著者Wilk, P, Orlikowska, M, Banas, A.M, Bocian-Ostrzycka, K.M, Jagusztyn-Krynicka, E.K.
登録日2021-09-16
公開日2021-12-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Interplay between DsbA1, DsbA2 and C8J_1298 Periplasmic Oxidoreductases of Campylobacter jejuni and Their Impact on Bacterial Physiology and Pathogenesis.
Int J Mol Sci, 22, 2021
7SF1
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SARS-CoV-2 Main Protease (Mpro) in Complex with ML1001
分子名称: (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(3,3-dimethylbutanoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
著者Westberg, M, Fernandez, D, Lin, M.Z.
登録日2021-10-02
公開日2022-10-05
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations.
Sci Transl Med, 16, 2024
6MG0
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BU of 6mg0 by Molmil
Crystal structure of a 5-domain construct of LgrA in the thiolation state
分子名称: 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine, Linear gramicidin synthase subunit A
著者Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6LKJ
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Two-component system protein mediate signal transduction
分子名称: 6-O-phosphono-beta-D-galactopyranose, ABC transporter, solute-binding protein
著者Wang, M, Tao, Y.
登録日2019-12-19
公開日2020-12-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
1BIN
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BU of 1bin by Molmil
LEGHEMOGLOBIN A (ACETOMET)
分子名称: ACETATE ION, LEGHEMOGLOBIN A, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Brucker, E.A, Hargrove, M.S, Phillips Jr, G.N.
登録日1996-08-23
公開日1997-03-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Characterization of recombinant soybean leghemoglobin a and apolar distal histidine mutants.
J.Mol.Biol., 266, 1997
6LTN
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cryo-EM structure of C-terminal truncated human Pannexin1
分子名称: Pannexin-1
著者Mou, L.Q, Ke, M, Xiao, Q.J, Wu, J.P, Deng, D.
登録日2020-01-23
公開日2020-05-13
最終更新日2020-05-27
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for gating mechanism of Pannexin 1 channel.
Cell Res., 30, 2020
6S1V
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BU of 6s1v by Molmil
Crystal structure of dimeric M-PMV protease D26N mutant in complex with inhibitor
分子名称: Gag-Pro-Pol polyprotein, PRO-0A1-VAL-PSA-ALA-MET-THR
著者Wosicki, S, Gilski, M, Jaskolski, M, Zabranska, H, Pichova, I.
登録日2019-06-19
公開日2019-10-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Comparison of a retroviral protease in monomeric and dimeric states.
Acta Crystallogr D Struct Biol, 75, 2019
6EY9
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BU of 6ey9 by Molmil
Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation
分子名称: Heat shock protein HSP 90-alpha, SULFATE ION, ~{N}-[(4-chlorophenyl)methyl]-~{N}-methyl-3-[(3-methylphenyl)methyl]-6-oxidanyl-1~{H}-indazole-5-carboxamide
著者Musil, D, Lehmann, M, Buchstaller, H.-P.
登録日2017-11-11
公開日2018-05-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations.
J Chem Theory Comput, 14, 2018
6V12
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BU of 6v12 by Molmil
Empty AAV8 particles
分子名称: Capsid protein
著者Mietzsch, M, Agbandje-McKenna, M.
登録日2019-11-19
公開日2019-12-11
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8.
J.Virol., 94, 2020
6LYW
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Structural insight into the biological functions of Arabidopsis thaliana ACHT1
分子名称: GLYCEROL, SULFATE ION, Thioredoxin-like 2-1, ...
著者Wang, J.C, Pan, W.M, Wang, M.Z, Zhang, M.
登録日2020-02-16
公開日2020-05-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insight into the biological functions of Arabidopsis thaliana ACHT1.
Int.J.Biol.Macromol., 158, 2020
7S8Z
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BU of 7s8z by Molmil
Room-temperature apo Human Hsp90a-NTD
分子名称: Heat shock protein HSP 90-alpha
著者Stachowski, T.R, Vanarotti, M, Lopez, K, Fischer, M.
登録日2021-09-20
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
6MFW
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Crystal structure of a 4-domain construct of LgrA in the substrate donation state
分子名称: (2~{R})-~{N}-[3-[2-[[(2~{S})-2-formamido-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-butanamide, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Linear gramicidin synthase subunit A, ...
著者Reimer, J.M, Eivaskhani, M, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
7S9G
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Room-temperature Human Hsp90a-NTD bound to BIIB021
分子名称: 6-chloro-9-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-9H-purin-2-amine, Heat shock protein HSP 90-alpha, MAGNESIUM ION
著者Stachowski, T.R, Vanarotti, M, Fischer, M.
登録日2021-09-21
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
6URJ
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BU of 6urj by Molmil
Barrier-to-autointegration factor soaked in Acetone: 1 of 14 in MSCS set
分子名称: Barrier-to-autointegration factor, ETHANOL
著者Agarwal, S, Smith, M, De La Rosa, I, Kliment, A.V, Swartz, P, Segura-Totten, M, Mattos, C.
登録日2019-10-23
公開日2020-10-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor.
Acta Crystallogr D Struct Biol, 76, 2020
7S9F
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Cryogenic Human Hsp90a-NTD bound to BIIB021
分子名称: 6-chloro-9-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-9H-purin-2-amine, Heat shock protein HSP 90-alpha, MAGNESIUM ION
著者Stachowski, T.R, Vanarotti, M, Seetharaman, J, Fischer, M.
登録日2021-09-20
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
7S95
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BU of 7s95 by Molmil
Room-temperature Human Hsp90a-NTD bound to adenine
分子名称: ADENINE, Heat shock protein HSP 90-alpha
著者Stachowski, T.R, Vanarotti, M, Lopez, K, Fischer, M.
登録日2021-09-20
公開日2022-08-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
8IHL
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BU of 8ihl by Molmil
Overlapping tri-nucleosome
分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H.
登録日2023-02-23
公開日2024-01-17
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (7.64 Å)
主引用文献Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
6USB
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BU of 6usb by Molmil
Barrier-to-autointegration factor soaked in urea: 1 of 14 in MSCS set
分子名称: Barrier-to-autointegration factor, ETHANOL
著者Agarwal, S, Smith, M, De La Rosa, I, Kliment, A.V, Swartz, P, Segura-Totten, M, Mattos, C.
登録日2019-10-25
公開日2020-10-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor.
Acta Crystallogr D Struct Biol, 76, 2020
7S9I
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Room-temperature Human Hsp90a-NTD bound to EC144
分子名称: 5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol, Heat shock protein HSP 90-alpha
著者Stachowski, T.R, Vanarotti, M, Fischer, M.
登録日2021-09-21
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
5MMX
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BU of 5mmx by Molmil
ABA RECEPTOR FROM CITRUS, CSPYL1
分子名称: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, CSPYL1_ABA
著者Moreno-Alvero, M, Yunta, C, Gonzalez-Guzman, M, Arbona, V, Granell, A, Martinez-Ripoll, M, Infantes, L, Rodriguez, P.L, Moreno-Alvero, M.
登録日2016-12-12
公開日2017-08-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.882 Å)
主引用文献Structure of Ligand-Bound Intermediates of Crop ABA Receptors Highlights PP2C as Necessary ABA Co-receptor.
Mol Plant, 10, 2017
7S9H
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BU of 7s9h by Molmil
Cryogenic Human Hsp90a-NTD bound to EC144
分子名称: 5-{2-amino-4-chloro-7-[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-methylpent-4-yn-2 -ol, Heat shock protein HSP 90-alpha, MAGNESIUM ION
著者Stachowski, T.R, Vanarotti, M, Seetharaman, J, Fischer, M.
登録日2021-09-21
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
7S98
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Cryogenic Human Hsp90a-NTD bound to N6M
分子名称: Heat shock protein HSP 90-alpha, N-METHYL-9H-PURIN-6-AMINE
著者Stachowski, T.R, Vanarotti, M, Lopez, K, Fischer, M.
登録日2021-09-20
公開日2022-08-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Water Networks Repopulate Protein-Ligand Interfaces with Temperature.
Angew.Chem.Int.Ed.Engl., 61, 2022
6M7G
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Crystal structure of ArsN, N-acetyltransferase with substrate phosphinothricin from Pseudomonas putida KT2440
分子名称: PHOSPHINOTHRICIN, Phosphinothricin N-acetyltransferase
著者Venkadesh, S, Dheeman, D.S, Yoshinaga, M, Kandavelu, P, Rosen, B.P.
登録日2018-08-20
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.657 Å)
主引用文献Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic.
Commun Biol, 2, 2019
8I5L
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BU of 8i5l by Molmil
Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies.
J.Virol., 98, 2024

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件を2024-08-28に公開中

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