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PDB: 51689 件

7FAL
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Co-crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in complex with T36 and L-pro
分子名称: 4-[(3R)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide, PROLINE, Prolyl-tRNA synthetase (ProRS)
著者Malhotra, N, Mishra, S, Yogavel, M, Sharma, A.
登録日2021-07-06
公開日2022-08-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.219 Å)
主引用文献Targeting prolyl-tRNA synthetase via a series of ATP-mimetics to accelerate drug discovery against toxoplasmosis.
Plos Pathog., 19, 2023
1RQH
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Propionibacterium shermanii transcarboxylase 5S subunit bound to pyruvic acid
分子名称: COBALT (II) ION, PYRUVIC ACID, transcarboxylase 5S subunit
著者Hall, P.R, Zheng, R, Antony, L, Pusztai-Carey, M, Carey, P.R, Yee, V.C.
登録日2003-12-05
公開日2004-09-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Transcarboxylase 5S structures: assembly and catalytic mechanism of a multienzyme complex subunit.
Embo J., 23, 2004
7F84
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Crystal structure of CRISPR-associated Cas2c of Leptospira interrogans
分子名称: CRISPR-associated endoribonuclease Cas2, GLYCEROL
著者Gogoi, P, Anand, V, Prabhakaran, H.S, Kumar, M, Kanaujia, S.P.
登録日2021-07-01
公開日2022-07-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural and functional characterization of Cas2 of CRISPR-Cas subtype I-C lacking the CRISPR component.
Front Mol Biosci, 9, 2022
7K10
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CryoEM structure of activated-form FATKIN domain of DNA-PK
分子名称: DNA-dependent protein kinase catalytic subunit
著者Chen, X, Gellert, M, Yang, W.
登録日2020-09-06
公開日2021-01-06
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of an activated DNA-PK and its implications for NHEJ.
Mol.Cell, 81, 2021
7JYY
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Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).
分子名称: 2'-O-methyltransferase, CHLORIDE ION, FORMIC ACID, ...
著者Minasov, G, Shuvalova, L, Rosas-Lemus, M, Kiryukhina, O, Brunzelle, J.S, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-09-01
公開日2020-09-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Mn 2+ coordinates Cap-0-RNA to align substrates for efficient 2'- O -methyl transfer by SARS-CoV-2 nsp16.
Sci.Signal., 14, 2021
7K3B
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BU of 7k3b by Molmil
Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation C, central helices splay
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
著者Gui, M, Gao, J, Xiang, Y.
登録日2020-09-10
公開日2020-11-11
最終更新日2020-12-09
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural intermediates in the low pH-induced transition of influenza hemagglutinin.
Plos Pathog., 16, 2020
7FJ7
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BU of 7fj7 by Molmil
KpAckA (PduW) native structure
分子名称: Probable propionate kinase
著者Wu, W, Zhang, Q, Bartlam, M.
登録日2021-08-03
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献KpAckA (PduW) native structure
To Be Published
7K19
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CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex I)
分子名称: DNA (5'-D(*AP*AP*GP*CP*AP*GP*TP*AP*GP*AP*GP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*TP*CP*TP*AP*CP*TP*GP*CP*TP*TP*CP*GP*AP*TP*AP*TP*CP*G)-3'), DNA-dependent protein kinase catalytic subunit
著者Chen, X, Gellert, M, Yang, W.
登録日2020-09-07
公開日2021-01-06
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structure of an activated DNA-PK and its implications for NHEJ.
Mol.Cell, 81, 2021
6T5M
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Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
分子名称: 2-methylisocitrate lyase, MAGNESIUM ION, PYRUVIC ACID
著者Wijaya, A.J, Brear, P, Dolan, S.K, Welch, M.
登録日2019-10-16
公開日2020-09-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
To Be Published
7FJ8
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KpAckA (PduW) with AMP complex structure
分子名称: ADENOSINE MONOPHOSPHATE, Probable propionate kinase
著者Wu, W, Zhang, Q, Bartlam, M.
登録日2021-08-03
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献KpAckA (PduW) with AMP complex structure
To Be Published
7K4X
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BU of 7k4x by Molmil
Crystal structure of Kemp Eliminase HG3.7 in complex with the transition state analog 6-nitrobenzotriazole
分子名称: 6-NITROBENZOTRIAZOLE, ACETATE ION, Endo-1,4-beta-xylanase, ...
著者Padua, R.A.P, Otten, R, Bunzel, A, Nguyen, V, Pitsawong, W, Patterson, M, Sui, S, Perry, S.L, Cohen, A.E, Hilvert, D, Kern, D.
登録日2020-09-16
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.
Science, 370, 2020
7FJ9
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BU of 7fj9 by Molmil
KpAckA (PduW) with AMPPNP complex structure
分子名称: ACETATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable propionate kinase
著者Wu, W, Zhang, Q, Bartlam, M.
登録日2021-08-03
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献KpAckA (PduW) with AMPPNP complex structure
To Be Published
7K37
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Structure of full-length influenza HA with a head-binding antibody at pH 7.8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
著者Gui, M, Xiang, Y, Gao, J.
登録日2020-09-10
公開日2020-11-11
最終更新日2020-12-09
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural intermediates in the low pH-induced transition of influenza hemagglutinin.
Plos Pathog., 16, 2020
1RMQ
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BU of 1rmq by Molmil
Crystal structure of AphA class B acid phosphatase/phosphotransferase with osmiate mimicking the catalytic intermediate
分子名称: COBALT (II) ION, Class B acid phosphatase, OSMIUM ION
著者Calderone, V, Forleo, C, Benvenuti, M, Rossolini, G.M, Thaller, M.C, Mangani, S.
登録日2003-11-28
公開日2004-12-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insights in the catalytic mechanism of AphA from Escherichia coli
To be Published
7FJB
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KpAckA (PduW) with AMPPNP, sodium acetate complex structure
分子名称: ACETATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable propionate kinase, ...
著者Wenyue, W, Zhang, Q, Bartlam, M.
登録日2021-08-03
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献KpAckA (PduW) with AMPPNP, sodium acetate complex structure
To Be Published
5O9H
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BU of 5o9h by Molmil
Crystal structure of thermostabilised human C5a anaphylatoxin chemotactic receptor 1 (C5aR) in complex with NDT9513727
分子名称: 1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine, C5a anaphylatoxin chemotactic receptor 1, CITRIC ACID, ...
著者Robertson, N, Rappas, M, Dore, A.S, Brown, J, Bottegoni, G, Koglin, M, Cansfield, J, Jazayeri, A, Cooke, R.M, Marshall, F.H.
登録日2017-06-19
公開日2018-01-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the complement C5a receptor bound to the extra-helical antagonist NDT9513727.
Nature, 553, 2018
7K4Z
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BU of 7k4z by Molmil
Crystal structure of Kemp Eliminase HG3.17 in complex with the transition state analog 6-nitrobenzotriazole
分子名称: 6-NITROBENZOTRIAZOLE, Endo-1,4-beta-xylanase, PENTAETHYLENE GLYCOL
著者Padua, R.A.P, Otten, R, Bunzel, A, Nguyen, V, Pitsawong, W, Patterson, M, Sui, S, Perry, S.L, Cohen, A.E, Hilvert, D, Kern, D.
登録日2020-09-16
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.
Science, 370, 2020
7FJA
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BU of 7fja by Molmil
KpAckA (PduW) with AMPPNP, ethylene glycol complex structure
分子名称: 1,2-ETHANEDIOL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable propionate kinase
著者Wu, W, Zhang, Q, Bartlam, M.
登録日2021-08-03
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献KpAckA (PduW) with AMPPNP, ethylene glycol complex structure
To Be Published
6T99
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BU of 6t99 by Molmil
Crystal structrue of RSL W31YW76Y lectin mutant in complex with alpha-methylfucoside
分子名称: Fucose-binding lectin protein, SODIUM ION, methyl alpha-L-fucopyranoside
著者Houser, J, Kozmon, S, Wimmerova, M.
登録日2019-10-26
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The CH-pi Interaction in Protein-Carbohydrate Binding: Bioinformatics and In Vitro Quantification.
Chemistry, 26, 2020
7EXF
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BU of 7exf by Molmil
Crystal structure of wild-type from Arabidopsis thaliana complexed with Galactose
分子名称: Probable galactinol--sucrose galactosyltransferase 6, beta-D-galactopyranose
著者Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
登録日2021-05-27
公開日2022-11-30
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023
1YO4
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BU of 1yo4 by Molmil
Solution Structure of the SARS Coronavirus ORF 7a coded X4 protein
分子名称: Hypothetical protein X4
著者Haenel, K, Stangler, T, Stoldt, M, Willbold, D.
登録日2005-01-26
公開日2006-01-17
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains.
J.Biomed.Sci., 13, 2006
7EXH
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BU of 7exh by Molmil
Crystal structure of D383A mutant from Arabidopsis thaliana complexed with Galactinol.
分子名称: Probable galactinol--sucrose galactosyltransferase 6, galactinol
著者Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
登録日2021-05-27
公開日2022-11-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023
7EXJ
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Crystal structure of alkaline alpha-galctosidase D383A mutant from Arabidopsis thaliana complexed with Raffinose
分子名称: Probable galactinol--sucrose galactosyltransferase 6, alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose
著者Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
登録日2021-05-27
公開日2022-11-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023
7EXR
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BU of 7exr by Molmil
Crystal structure of alkaline alpha-galactosidase D383A mutant from Arabidopsis thaliana complexed with Stachyose.
分子名称: Probable galactinol--sucrose galactosyltransferase 6, alpha-D-galactopyranose-(1-6)-alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose
著者Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
登録日2021-05-28
公開日2022-11-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023
7EXG
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BU of 7exg by Molmil
Crystal structure of D383A mutant from Arabidopsis thaliana complexed with Galactose.
分子名称: Probable galactinol--sucrose galactosyltransferase 6, beta-D-galactopyranose
著者Chuankhayan, P, Guan, H.H, Lin, C.C, Chen, N.C, Huang, Y.C, Yoshimura, M, Nakagawa, A, Lee, R.H, Chen, C.J.
登録日2021-05-27
公開日2022-11-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural insight into the hydrolase and synthase activities of an alkaline alpha-galactosidase from Arabidopsis from complexes with substrate/product.
Acta Crystallogr D Struct Biol, 79, 2023

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件を2024-09-04に公開中

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