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PDB: 51689 件

2M40
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DNA containing a cluster of 8-oxo-guanine and THF lesion
分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(3DR)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3')
著者Zalesak, J, Jourdan, M, Constant, J, Lourdin, M.
登録日2013-01-28
公開日2014-01-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions.
J.Mol.Biol., 426, 2014
2MMT
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Lasso peptide-based integrin inhibitor: Microcin J25 variant with RGDF substitution of Gly12-Ile13-Gly14-Thr15
分子名称: Microcin J25 RGDF mutant
著者Hegemann, J.D, Zimmermann, M, Knappe, T.A, Xie, X, Marahiel, M.A.
登録日2014-03-18
公開日2014-07-02
最終更新日2014-07-23
実験手法SOLUTION NMR
主引用文献Rational improvement of the affinity and selectivity of integrin binding of grafted lasso peptides.
J.Med.Chem., 57, 2014
2MNG
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Apo Structure of human HCN4 CNBD solved by NMR
分子名称: Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
著者Akimoto, M, Zhang, Z, Boulton, S, Selvaratnam, R, VanSchouwen, B, Gloyd, M, Accili, E.A, Lange, O.F, Melacini, G.
登録日2014-04-03
公開日2014-06-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A mechanism for the auto-inhibition of hyperpolarization-activated cyclic nucleotide-gated (HCN) channel opening and its relief by cAMP.
J.Biol.Chem., 289, 2014
2MF0
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Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex
分子名称: Carbon storage regulator homolog, RNA_(72-MER)
著者Duss, O, Michel, E, Yulikov, M, Schubert, M, Jeschke, G, Allain, F.H.-T.
登録日2013-10-02
公開日2014-05-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis of the non-coding RNA RsmZ acting as a protein sponge.
Nature, 509, 2014
2M4X
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Analysis of the structural and molecular basis of voltage-sensitive sodium channel inhibition by the spider toxin, Huwentoxin-IV (-TRTX-Hh2a).
分子名称: Mu-theraphotoxin-Hh2a
著者Gibbs, A, Flinspach, M.
登録日2013-02-11
公開日2013-06-19
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Analysis of the Structural and Molecular Basis of Voltage-sensitive Sodium Channel Inhibition by the Spider Toxin Huwentoxin-IV ( mu-TRTX-Hh2a).
J.Biol.Chem., 288, 2013
2M43
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DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer (AP6, 8OG 14)
分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3')
著者Zalesak, J, Jourdan, M, Constant, J, Lourdin, M.
登録日2013-01-29
公開日2014-01-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions.
J.Mol.Biol., 426, 2014
2R2Z
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The crystal structure of a hemolysin domain from Enterococcus faecalis V583
分子名称: Hemolysin, ZINC ION
著者Zhang, R, Tan, K, Zhou, M, Bargassa, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2007-08-28
公開日2007-09-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The crystal structure of a hemolysin domain from Enterococcus faecalis V583.
To be Published
2QGM
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Crystal structure of succinoglycan biosynthesis protein at the resolution 1.7 A. Northeast Structural Genomics Consortium target BcR136.
分子名称: Succinoglycan biosynthesis protein
著者Kuzin, A.P, Abashidze, M, Jayaraman, S, Wang, H, Fang, Y, Maglaqui, M, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2007-06-29
公開日2007-07-24
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of succinoglycan biosynthesis protein at the resolution 1.7 A. Northeast Structural Genomics Consortium target BcR136.
To be Published
2QJG
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M. jannaschii ADH synthase complexed with F1,6P
分子名称: 1,6-DI-O-PHOSPHONO-D-ALLITOL, Putative aldolase MJ0400
著者Ealick, S.E, Morar, M.
登録日2007-07-07
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid synthase, a catalyst in the archaeal pathway for the biosynthesis of aromatic amino acids.
Biochemistry, 46, 2007
2QKS
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Crystal structure of a Kir3.1-prokaryotic Kir channel chimera
分子名称: Kir3.1-prokaryotic Kir channel chimera, POTASSIUM ION, nonyl beta-D-glucopyranoside
著者Nishida, M, MacKinnon, R.
登録日2007-07-11
公開日2007-08-28
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a Kir3.1-prokaryotic Kir channel chimera.
Embo J., 26, 2007
2QLP
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Bifunctional dCTP deaminase:dUTPase from Mycobacterium tuberculosis, apo form
分子名称: Deoxycytidine triphosphate deaminase, PENTAETHYLENE GLYCOL
著者Christophersen, S, Harris, P, Willemoes, M.
登録日2007-07-13
公開日2008-02-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Mechanism of dTTP inhibition of the bifunctional dCTP deaminase:dUTPase encoded by Mycobacterium tuberculosis
J.Mol.Biol., 376, 2007
2QMM
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BU of 2qmm by Molmil
Crystal structure of APC86534.1 (C-terminal domain of NCBI AAB90184.1; Pfam BIG 123.1)
分子名称: S-ADENOSYLMETHIONINE, UPF0217 protein AF_1056
著者Joachimiak, A, Duke, N, Zhou, M, Gu, M, Midwest Center for Structural Genomics (MCSG)
登録日2007-07-16
公開日2007-08-14
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of APC86534.1 (C-terminal domain of NCBI AAB90184.1; Pfam BIG 123.1).
To be Published
2QNR
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Human septin 2 in complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, Septin-2, UNKNOWN ATOM OR ION
著者Rabeh, W.M, Nedyalkova, L, Tempel, W, Landry, R, Crombet, L, Kozieradzki, I, Senisterra, G, Vedadi, M, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2007-07-19
公開日2007-07-31
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Human septin 2 in complex with GDP.
To be Published
2QO6
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Crystal structure of the glycine 55 arginine mutant of zebrafish liver bile acid-binding protein complexed with cholic acid
分子名称: CHOLIC ACID, GLYCEROL, ISOPROPYL ALCOHOL, ...
著者Capaldi, S, Saccomani, G, Perduca, M, Monaco, H.L.
登録日2007-07-20
公開日2007-07-31
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Single Amino Acid Mutation in Zebrafish (Danio rerio) Liver Bile Acid-binding Protein Can Change the Stoichiometry of Ligand Binding.
J.Biol.Chem., 282, 2007
2QH9
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BU of 2qh9 by Molmil
The crystal structure of a protein of unknown function from Archaeoglobus fulgidus DSM 4304
分子名称: UPF0215 protein AF_1433
著者Zhang, R, Zhou, M, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2007-07-01
公開日2007-09-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The crystal structure of a protein of unknown function from Archaeoglobus fulgidus DSM 4304.
To be Published
2QDJ
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Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture
分子名称: Retinoblastoma-associated protein
著者Hassler, M, Mittnacht, S, Pearl, L.H.
登録日2007-06-21
公開日2008-01-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the retinoblastoma protein N domain provides insight into tumor suppression, ligand interaction, and holoprotein architecture.
Mol.Cell, 28, 2007
2QEG
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BU of 2qeg by Molmil
B-DNA with 7-deaza-dG modification
分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*(7GU)P*DCP*DG)-3')
著者Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
登録日2007-06-25
公開日2008-05-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
5OY1
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Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with DMSO
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2017-09-07
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase.
Acs Chem.Biol., 13, 2018
7P8J
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Receptor-binding domain (RBD) of the spike protein of the bat coronavirus RaTG13 virus in complex with the extracellular domain of human angiotensin-converting enzyme 2 (ACE2) - Crystal form 2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike glycoprotein, ...
著者Scietti, L, Castelli, M, Faravelli, S, Clementi, N, Mancini, N, Forneris, F.
登録日2021-07-22
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (6.585 Å)
主引用文献Constrained Evolution of SARS-CoV-2 Spike in Rhinolophus affinis Bats
To Be Published
9AUR
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Crystal structure of loop-closed A21 2'-OMe dumbbell RNA bridged by glycine
分子名称: Fab BL3-6 heavy chain, Fab BL3-6 light chain, GLYCINE, ...
著者Radakovic, A, Lewicka, A, Todisco, M, Aitken, H.R.M, Weiss, Z, Kim, S, Bannan, A, Piccirilli, J.A, Szostak, J.W.
登録日2024-02-29
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献A potential role for RNA aminoacylation prior to its role in peptide synthesis.
Proc.Natl.Acad.Sci.USA, 121, 2024
5E3A
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BU of 5e3a by Molmil
Structure of human DPP3 in complex with opioid peptide leu-enkephalin
分子名称: Dipeptidyl peptidase 3, Leu-enkephalin, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-02
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
7P8I
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Receptor-binding domain (RBD) of the spike protein of the bat coronavirus RaTG13 virus in complex with the extracellular domain of human angiotensin-converting enzyme 2 (ACE2) - Crystal form 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Scietti, L, Castelli, M, Faravelli, S, Clementi, N, Mancini, N, Forneris, F.
登録日2021-07-22
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Evidence of SARS-CoV-2 Direct Evolution in R. affinis Bats Driven by Affinity and Dynamics Optimization of the Spike Protein
To Be Published
9AUS
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Crystal structure of loop-closed dumbbell RNA bridged by glycine
分子名称: Fab BL3-6 heavy chain, Fab BL3-6 light chain, GLYCINE, ...
著者Radakovic, A, Lewicka, A, Todisco, M, Aitken, H.R.M, Weiss, Z, Kim, S, Bannan, A, Piccirilli, J.A, Szostak, J.W.
登録日2024-02-29
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献A potential role for RNA aminoacylation prior to its role in peptide synthesis.
Proc.Natl.Acad.Sci.USA, 121, 2024
5E4G
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Crystal structure of human growth differentiation factor 11 (GDF-11)
分子名称: Growth/differentiation factor 11, TETRAETHYLENE GLYCOL
著者Padyana, A.K, Vaidialingam, B, Hayes, D.B, Gupta, P, Franti, M, Farrow, N.A.
登録日2015-10-06
公開日2016-03-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of human GDF11.
Acta Crystallogr.,Sect.F, 72, 2016
8BHX
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High resolution structure of the iron Superoxide Dismutase from Thermobifida fusca
分子名称: BORIC ACID, FE (III) ION, Superoxide dismutase
著者Leiros, H.-K.S, Sorlie, M.
登録日2022-11-01
公開日2023-09-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Initial characterization of an iron superoxide dismutase from Thermobifida fusca.
J.Biol.Inorg.Chem., 28, 2023

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件を2024-09-04に公開中

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