Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

6W6Y
DownloadVisualize
BU of 6w6y by Molmil
Crystal Structure of ADP ribose phosphatase of NSP3 from SARS CoV-2 in complex with AMP
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, Non-structural protein 3
著者Michalska, K, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Mesecar, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-03-18
公開日2020-03-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.451 Å)
主引用文献Crystal structures of SARS-CoV-2 ADP-ribose phosphatase: from the apo form to ligand complexes.
Iucrj, 7, 2020
4P26
DownloadVisualize
BU of 4p26 by Molmil
Structure of the P domain from a GI.7 Norovirus variant in complex with A-type 2 HBGA
分子名称: P domain of VP1, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Shanker, S, Czako, R, Sankaran, B, Atmar, R, Estes, M, Prasad, B.V.V.
登録日2014-03-01
公開日2014-04-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of determinants of histo-blood group antigen binding specificity in genogroup I noroviruses.
J.Virol., 88, 2014
2NCT
DownloadVisualize
BU of 2nct by Molmil
NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of hexafluoroisopropanol
分子名称: Envelope glycoprotein gp41
著者Jimenez, M, Nieva, J.L, Rujas, E, Partida-Hanon, A, Bruix, M.
登録日2016-04-14
公開日2017-02-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface.
Sci Rep, 6, 2016
5JAM
DownloadVisualize
BU of 5jam by Molmil
Yersinia pestis FabV variant T276V
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, DIMETHYL SULFOXIDE, Enoyl-[acyl-carrier-protein] reductase [NADH]
著者Pschibul, A, Kuper, J, HIrschbeck, M, Kisker, C.
登録日2016-04-12
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Selectivity of Pyridone- and Diphenyl Ether-Based Inhibitors for the Yersinia pestis FabV Enoyl-ACP Reductase.
Biochemistry, 55, 2016
6N7F
DownloadVisualize
BU of 6n7f by Molmil
1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICARBONATE ION, ...
著者Minasov, G, Shuvalova, L, Shabalin, I.G, Grabowski, M, Olphie, A, Cardona-Correa, A, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2018-11-27
公開日2018-12-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
To Be Published
7TPS
DownloadVisualize
BU of 7tps by Molmil
Crystal structure of ALPN-202 (engineered CD80 vIgD) in complex with PD-L1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Demonte, D.W, Maurer, M.F, Akutsu, M, Kimbung, Y.R, Logan, D.T, Walse, B.
登録日2022-01-26
公開日2022-03-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献The engineered CD80 variant fusion therapeutic davoceticept combines checkpoint antagonism with conditional CD28 costimulation for anti-tumor immunity.
Nat Commun, 13, 2022
3MKM
DownloadVisualize
BU of 3mkm by Molmil
Crystal structure of the E. coli pyrimidine nucleoside hydrolase YeiK (Apo-form)
分子名称: CALCIUM ION, Putative uncharacterized protein YeiK
著者Garau, G, Fornili, A, Giabbai, B, Degano, M.
登録日2010-04-15
公開日2010-12-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Energy Landscapes Associated with Macromolecular Conformational Changes from Endpoint Structures
J.Am.Chem.Soc., 132, 2010
6MS1
DownloadVisualize
BU of 6ms1 by Molmil
Crystal structure of the human Scribble PDZ1 domain bound to the PDZ-binding motif of APC
分子名称: 1,2-ETHANEDIOL, APC C-terminus peptide, Protein scribble homolog
著者How, J.Y, Kvansakul, M, Caria, S, Humbert, P.O.
登録日2018-10-16
公開日2019-02-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of the human Scribble PDZ1 domain bound to the PDZ-binding motif of APC.
FEBS Lett., 593, 2019
6MS8
DownloadVisualize
BU of 6ms8 by Molmil
Crystal Structure of Chalcone Isomerase from Medicago Truncatula Complexed with (2S) Naringenin
分子名称: Chalcone-flavonone isomerase family protein, NARINGENIN
著者Burke, J.R, La Clair, J.J, Philippe, R.N, Pabis, A, Jez, J.M, Cortina, G, Kaltenbach, M, Bowman, M.E, Woods, K.B, Nelson, A.T, Tawfik, D.S, Kamerlin, S.C.L, Noel, J.P.
登録日2018-10-16
公開日2019-08-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases
Acs Catalysis, 2019
7ZTL
DownloadVisualize
BU of 7ztl by Molmil
Crystal structure of a covalently linked Aurora-A N-Myc complex
分子名称: 4-(3-hydroxy-3-oxopropylamino)-4-oxidanylidene-butanoic acid, ADENOSINE-5'-DIPHOSPHATE, Aurora kinase A, ...
著者Diebold, M, Schindelin, H.
登録日2022-05-11
公開日2023-01-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a covalently linked Aurora-A-MYCN complex.
Acta Crystallogr D Struct Biol, 79, 2023
6MZY
DownloadVisualize
BU of 6mzy by Molmil
Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction of the compacted subpopulation
分子名称: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein
著者Greber, B.J, Sutter, M, Kerfeld, C.A.
登録日2018-11-06
公開日2019-03-13
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly.
Structure, 27, 2019
6FDT
DownloadVisualize
BU of 6fdt by Molmil
NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP70 peptide SGPTIEEVD
分子名称: Heat shock 70 kDa protein 1B, RNA polymerase II-associated protein 3
著者Quinternet, M, Chagot, M.E, Manival, X.
登録日2017-12-26
公開日2018-08-01
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex.
Structure, 26, 2018
6VL4
DownloadVisualize
BU of 6vl4 by Molmil
Crystal Structure of mPGES-1 bound to DG-031
分子名称: (2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid, Prostaglandin E synthase, TETRAETHYLENE GLYCOL, ...
著者Ho, J.D, Lee, M.R, Rauch, C.T, Aznavour, K, Park, J.S, Luz, J.G, Antonysamy, S, Condon, B, Maletic, M, Zhang, A, Hickey, M.J, Hughes, N.E, Chandrasekhar, S, Sloan, A.V, Gooding, K, Harvey, A, Yu, X.P, Kahl, S.D, Norman, B.H.
登録日2020-01-22
公開日2020-12-02
最終更新日2020-12-16
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure-based, multi-targeted drug discovery approach to eicosanoid inhibition: Dual inhibitors of mPGES-1 and 5-lipoxygenase activating protein (FLAP).
Biochim Biophys Acta Gen Subj, 1865, 2020
7OUI
DownloadVisualize
BU of 7oui by Molmil
Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana (digitonin-extracted)
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Graca, A.T, Hall, M, Persson, K, Schroder, W.P.
登録日2021-06-11
公開日2021-08-18
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献High-resolution model of Arabidopsis Photosystem II reveals the structural consequences of digitonin-extraction.
Sci Rep, 11, 2021
7TT7
DownloadVisualize
BU of 7tt7 by Molmil
BamABCDE bound to substrate EspP in the barrelized EspP/continuous open BamA state
分子名称: Maltose/maltodextrin-binding periplasmic protein,Serine protease EspP chimera, Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamC, ...
著者Doyle, M.T, Jimah, J.R, Dowdy, T, Ohlemacher, S.I, Larion, M, Hinshaw, J.E, Bernstein, H.D.
登録日2022-01-31
公開日2022-03-30
最終更新日2022-04-13
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Cryo-EM structures reveal multiple stages of bacterial outer membrane protein folding.
Cell, 185, 2022
5OBR
DownloadVisualize
BU of 5obr by Molmil
Aurora A kinase in complex with 2-(3-chloro-5-fluorophenyl)quinoline-4-carboxylic acid and JNJ-7706621
分子名称: 2-(3-chloranyl-5-fluoranyl-phenyl)quinoline-4-carboxylic acid, 4-({5-amino-1-[(2,6-difluorophenyl)carbonyl]-1H-1,2,4-triazol-3-yl}amino)benzenesulfonamide, Aurora kinase A, ...
著者Rossmann, M, Janecek, M, Hyvonen, M.
登録日2017-06-29
公開日2017-08-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Computationally-guided optimization of small-molecule inhibitors of the Aurora A kinase-TPX2 protein-protein interaction.
Chem. Commun. (Camb.), 53, 2017
7TJ8
DownloadVisualize
BU of 7tj8 by Molmil
Cryo-EM structure of the human Nax channel in complex with beta3 solved in nanodiscs
分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Noland, C.L, Kschonsak, M, Ciferri, C, Payandeh, J.
登録日2022-01-14
公開日2022-03-30
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure-guided unlocking of Na X reveals a non-selective tetrodotoxin-sensitive cation channel.
Nat Commun, 13, 2022
6PNV
DownloadVisualize
BU of 6pnv by Molmil
1.42 Angstrom Resolution Crystal Structure of Translocation Protein TolB from Salmonella enterica
分子名称: POTASSIUM ION, SODIUM ION, Tol-Pal system protein TolB
著者Minasov, G, Shuvalova, L, Dubrovska, I, Kiryukhina, O, Endres, M, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2019-07-03
公開日2019-07-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献1.42 Angstrom Resolution Crystal Structure of Translocation Protein TolB from Salmonella enterica
To Be Published
1YS5
DownloadVisualize
BU of 1ys5 by Molmil
Solution structure of the antigenic domain of GNA1870 of Neisseria meningitidis
分子名称: lipoprotein
著者Cantini, F, Savino, S, Masignani, V, Pizza, M, Scarselli, M, Swennen, E, Romagnoli, G, Veggi, D, Banci, L, Rappuoli, R.
登録日2005-02-07
公開日2006-02-07
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the immunodominant domain of protective antigen GNA1870 of Neisseria meningitidis
J.Biol.Chem., 281, 2006
1YMR
DownloadVisualize
BU of 1ymr by Molmil
The study of reductive unfolding pathways of RNase A (Y92A mutant)
分子名称: Ribonuclease pancreatic
著者Xu, G, Narayan, M, Kurinov, I, Ripoll, D.R, Welker, E, Khalili, M, Ealick, S.E, Scheraga, H.A.
登録日2005-01-21
公開日2006-01-31
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A localized specific interaction alters the unfolding pathways of structural homologues.
J.Am.Chem.Soc., 128, 2006
6PQB
DownloadVisualize
BU of 6pqb by Molmil
Crystal structure of aminoglycoside-resistance methyltransferase RmtC bound to S-adenosylhomocysteine (SAH)
分子名称: 16S rRNA (guanine(1405)-N(7))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Nosrati, M, Hoffer, E.D, Conn, G.L.
登録日2019-07-08
公開日2019-10-16
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Functionally critical residues in the aminoglycoside resistance-associated methyltransferase RmtC play distinct roles in 30S substrate recognition.
J.Biol.Chem., 294, 2019
7TT6
DownloadVisualize
BU of 7tt6 by Molmil
BamABCDE bound to substrate EspP in the intermediate-open EspP state
分子名称: Maltose/maltodextrin-binding periplasmic protein,Serine protease EspP chimera, Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamC, ...
著者Doyle, M.T, Jimah, J.R, Dowdy, T, Ohlemacher, S.I, Larion, M, Hinshaw, J.E, Bernstein, H.D.
登録日2022-01-31
公開日2022-03-30
最終更新日2022-04-13
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Cryo-EM structures reveal multiple stages of bacterial outer membrane protein folding.
Cell, 185, 2022
2MUJ
DownloadVisualize
BU of 2muj by Molmil
Plasmodium falciparum SERA protein peptide analogues having short helical regions induce protection against malaria
分子名称: Serine-repeat antigen protein
著者Cubillos, M, Alba, M, Bermudez, A, Trujillo, M, Patarroyo, M.E.
登録日2014-09-10
公開日2015-02-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Plasmodium falciparum SERA protein peptide analogues having short helical regions induce protection against malaria.
Biochimie, 85, 2003
6VLE
DownloadVisualize
BU of 6vle by Molmil
Crystal structure of human alpha 1,6-fucosyltransferase, FUT8 in its Apo-form
分子名称: Alpha-(1,6)-fucosyltransferase, SULFATE ION
著者Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
登録日2020-01-23
公開日2020-02-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
1AA2
DownloadVisualize
BU of 1aa2 by Molmil
CALPONIN HOMOLOGY (CH) DOMAIN FROM HUMAN BETA-SPECTRIN
分子名称: BETA-SPECTRIN
著者Djinovic Carugo, K, Banuelos, S, Saraste, M.
登録日1997-01-21
公開日1998-02-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a calponin homology domain.
Nat.Struct.Biol., 4, 1997

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon