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PDB: 1124 results

8RFK
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Soluble glucose dehydrogenase from acinetobacter calcoaceticus - single mutant pH8
Descriptor: 3-(3,5-dicarboxy-1~{H}-pyrrol-2-yl)pyridine-2,4,6-tricarboxylic acid, CALCIUM ION, Quinoprotein glucose dehydrogenase B
Authors:Lublin, V, Chavas, L, Stines-Chaumeil, C, Kauffmann, B, Giraud, M.F, Thompson, A.
Deposit date:2023-12-13
Release date:2024-05-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Does Acinetobacter calcoaceticus glucose dehydrogenase produce self-damaging H2O2?
Biosci.Rep., 44, 2024
8RE0
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Soluble glucose dehydrogenase from acinetobacter calcoaceticus - double mutant pH8
Descriptor: 3-(3,5-dicarboxy-1~{H}-pyrrol-2-yl)pyridine-2,4,6-tricarboxylic acid, CALCIUM ION, LITHIUM ION, ...
Authors:Lublin, V, Chavas, L, Stines-Chaumeil, C, Kauffmann, B, Giraud, M.F, Thompson, A.
Deposit date:2023-12-09
Release date:2024-05-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Does Acinetobacter calcoaceticus glucose dehydrogenase produce self-damaging H2O2?
Biosci.Rep., 44, 2024
8RG1
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Soluble glucose dehydrogenase from acinetobacter calcoaceticus - wild type pH8
Descriptor: 3-(3,5-dicarboxy-1~{H}-pyrrol-2-yl)pyridine-2,4,6-tricarboxylic acid, CALCIUM ION, LITHIUM ION, ...
Authors:Lublin, V, Chavas, L, Stines-Chaumeil, C, Kauffmann, B, Giraud, M.F, Thompson, A.
Deposit date:2023-12-13
Release date:2024-05-08
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Does Acinetobacter calcoaceticus glucose dehydrogenase produce self-damaging H2O2?
Biosci.Rep., 44, 2024
6WVT
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BU of 6wvt by Molmil
Structural basis of alphaE-catenin - F-actin catch bond behavior
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Xu, X.P, Pokutta, S, Torres, M, Swift, M.F, Hanein, D, Volkmann, N, Weis, W.I.
Deposit date:2020-05-06
Release date:2020-10-07
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structural basis of alpha E-catenin-F-actin catch bond behavior.
Elife, 9, 2020
8FYU
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BU of 8fyu by Molmil
Crystal structure of the human CHIP-TPR domain in complex with a 10mer acetylated tau peptide
Descriptor: ACE-SER-SER-THR-GLY-SER-ILE-ASP-MET-VAL-ASP, E3 ubiquitin-protein ligase CHIP
Authors:Wucherer, K, Bohn, M.F, Basu, K, Nadel, C.M, Gestwicki, J.E, Craik, C.S.
Deposit date:2023-01-26
Release date:2023-08-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.84839141 Å)
Cite:Phosphorylation of tau at a single residue inhibits binding to the E3 ubiquitin ligase, CHIP.
Nat Commun, 15, 2024
8GQP
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Complex of D-protein binder D-19437 and L-target L-Pep-1
Descriptor: D-binder, L-pep1
Authors:Liang, M.F, Li, S.C, Wang, T.Y, Liu, L, Lu, P.L.
Deposit date:2022-08-30
Release date:2023-09-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Accurate de novo design of heterochiral protein-protein interactions
Cell Res., 2024
4PJS
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BU of 4pjs by Molmil
Crystal structure of designed (SeMet)-cPPR-NRE protein
Descriptor: CALCIUM ION, Pentatricopeptide repeat protein
Authors:Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O.
Deposit date:2014-05-12
Release date:2014-12-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:An artificial PPR scaffold for programmable RNA recognition.
Nat Commun, 5, 2014
4PJQ
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BU of 4pjq by Molmil
Crystal structure of designed cPPR-polyG protein
Descriptor: Pentatricopeptide repeat protein
Authors:Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O.
Deposit date:2014-05-12
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.353 Å)
Cite:An artificial PPR scaffold for programmable RNA recognition.
Nat Commun, 5, 2014
8RMO
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BU of 8rmo by Molmil
Crystal structure of anti-FLAG M2 Fab fragment bound to FLAG-tag peptide epitope
Descriptor: CHLORIDE ION, FLAG-tag, anti-FLAG M2 heavy chain, ...
Authors:Beugelink, J.W, Janssen, B.J.C, Pronker, M.F.
Deposit date:2024-01-08
Release date:2024-04-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.163 Å)
Cite:Structural Basis for Recognition of the FLAG-tag by Anti-FLAG M2.
J.Mol.Biol., 436, 2024
8TE7
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BU of 8te7 by Molmil
Structure of TRNM-f.01
Descriptor: TRNM-f.01 Fab Heavy Chain, TRNM-f.01 Fab Light Chain
Authors:Bender, M.F, Olia, A.S, Kwong, P.D.
Deposit date:2023-07-05
Release date:2024-07-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Broad and Potent HIV-1 Neutralization in Fusion Peptide-primed SHIV-boosted Macaques
To Be Published
4PJR
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BU of 4pjr by Molmil
Crystal structure of designed cPPR-NRE protein
Descriptor: MAGNESIUM ION, Pentatricopeptide repeat protein
Authors:Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O.
Deposit date:2014-05-12
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:An artificial PPR scaffold for programmable RNA recognition.
Nat Commun, 5, 2014
4PY6
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BU of 4py6 by Molmil
Crystal Structure of bromodomain of PFA0510w from Plasmodium Falciparum
Descriptor: 1,2-ETHANEDIOL, 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Bromodomain protein, ...
Authors:Fonseca, M, Tallant, C, Hutchinson, A, Savitsky, P, Krojer, T, Filippakopoulos, P, Loppnau, P, Brennan, P.E, von Delft, F, Dong, A, Josling, G.A, Duffy, M.F, Arrowsmith, C.H, Bountra, C, Hui, R, Knapp, S, Wernimont, A.K, Structural Genomics Consortium (SGC)
Deposit date:2014-03-26
Release date:2014-04-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of bromodomain of PFA0510w from Plasmodium Falciparum
To be Published
4Q9B
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BU of 4q9b by Molmil
IgNAR antibody domain C2
Descriptor: Novel antigen receptor
Authors:Feige, J.M, Graewert, M.A, Marcinowski, M, Hennig, J, Behnke, J, Auslaender, D, Herold, E.M, Peschek, J, Castro, C.D, Flajnik, M.F, Hendershot, L.M, Sattler, M, Groll, M, Buchner, J.
Deposit date:2014-04-30
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins.
Proc.Natl.Acad.Sci.USA, 111, 2014
4QFG
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BU of 4qfg by Molmil
Structure of AMPK in complex with STAUROSPORINE inhibitor and in the absence of a synthetic activator
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-1, 5'-AMP-activated protein kinase subunit gamma-1, ...
Authors:Calabrese, M.F, Kurumbail, R.G.
Deposit date:2014-05-20
Release date:2014-08-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:Structural Basis for AMPK Activation: Natural and Synthetic Ligands Regulate Kinase Activity from Opposite Poles by Different Molecular Mechanisms.
Structure, 22, 2014
4QFR
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BU of 4qfr by Molmil
Structure of AMPK in complex with Cl-A769662 activator and STAUROSPORINE inhibitor
Descriptor: 2-chloro-4-hydroxy-3-(2'-hydroxybiphenyl-4-yl)-6-oxo-6,7-dihydrothieno[2,3-b]pyridine-5-carbonitrile, 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-1, ...
Authors:Calabrese, M.F, Kurumbail, R.G.
Deposit date:2014-05-21
Release date:2014-08-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Structural Basis for AMPK Activation: Natural and Synthetic Ligands Regulate Kinase Activity from Opposite Poles by Different Molecular Mechanisms.
Structure, 22, 2014
4Q0C
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BU of 4q0c by Molmil
3.1 A resolution crystal structure of the B. pertussis BvgS periplasmic domain
Descriptor: Virulence sensor protein BvgS
Authors:Dupre, E, Herrou, J, Lensink, M.F, Wintjens, R, Lebedev, A, Crosson, S, Villeret, V, Locht, C, Antoine, R, Jacob-Dubuisson, F.
Deposit date:2014-04-01
Release date:2015-02-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Virulence Regulation with Venus Flytrap Domains: Structure and Function of the Periplasmic Moiety of the Sensor-Kinase BvgS.
Plos Pathog., 11, 2015
4Q9C
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BU of 4q9c by Molmil
IgNAR antibody domain C3
Descriptor: CHLORIDE ION, Novel antigen receptor, SODIUM ION, ...
Authors:Feige, J.M, Graewert, M.A, Marcinowski, M, Hennig, J, Behnke, J, Auslaender, D, Herold, E.M, Peschek, J, Castro, C.D, Flajnik, M.F, Hendershot, L.M, Sattler, M, Groll, M, Buchner, J.
Deposit date:2014-04-30
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins.
Proc.Natl.Acad.Sci.USA, 111, 2014
5JJ4
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BU of 5jj4 by Molmil
Crystal Structure of a Variant Human Activation-induced Deoxycytidine Deaminase as an MBP fusion protein
Descriptor: CALCIUM ION, Maltose-binding periplasmic protein,Single-stranded DNA cytosine deaminase, ZINC ION, ...
Authors:Pedersen, L.C, Goodman, M.F, Pham, P, Afif, S.A.
Deposit date:2016-04-22
Release date:2016-06-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.807 Å)
Cite:Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification.
DNA Repair (Amst.), 43, 2016
7PPR
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BU of 7ppr by Molmil
The structure of UDP-glucose pyrophosphorylase from Aspergillus fumigatus
Descriptor: CHLORIDE ION, SULFATE ION, UTP--glucose-1-phosphate uridylyltransferase
Authors:Morton, S, Raimi, O.G, Yan, K, van Aalten, D.M.F.
Deposit date:2021-09-14
Release date:2022-09-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Genetic and structural validation of UDP-glucose pyrophosphorylase as a novel antifungal target against Aspergillus fumigatus
To Be Published
7PJC
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BU of 7pjc by Molmil
The structure of Candida albicans phosphoglucomutase with isothiazolone modification on Cys359
Descriptor: GLYCEROL, Phosphoglucomutase, SULFATE ION, ...
Authors:Yan, K, van Aalten, D.M.F.
Deposit date:2021-08-23
Release date:2022-09-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Targeting an essential step in the biosynthetic pathway of uridine diphosphate glucose in Aspergillus fumigatus
To Be Published
7QQK
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TIR-SAVED effector bound to cA3
Descriptor: RNA (5'-R(P*AP*AP*A)-3'), TIR_SAVED fusion protein
Authors:Spagnolo, L, White, M.F, Hogrel, G, Guild, A.
Deposit date:2022-01-09
Release date:2022-06-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cyclic nucleotide-induced helical structure activates a TIR immune effector.
Nature, 608, 2022
5KCS
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BU of 5kcs by Molmil
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
Descriptor: (2R,3R,4R,6S)-6-{[(2R,3aR,4R,4'R,5'S,6S,6'R,7S,7aR)-6-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4S,5S,6S)-6-({(2R,3aS,3a'R,6S,7R,7' R,7aS,7a'S)-7'-[(2,4-dihydroxy-6-methylbenzoyl)oxy]-7-hydroxyoctahydro-4H-2,4'-spirobi[[1,3]dioxolo[4,5-c]pyran]-6-yl}ox y)-4-hydroxy-5-methoxy-2-(methoxymethyl)tetrahydro-2H-pyran-3-yl]oxy}-3-hydroxy-5-methoxy-6-methyltetrahydro-2H-pyran-4- yl]oxy}-4',7-dihydroxy-4,6',7a-trimethyloctahydro-4H-spiro[1,3-dioxolo[4,5-c]pyran-2,2'-pyran]-5'-yl]oxy}-4-{[(2R,4S,5R, 6S)-5-methoxy-4,6-dimethyl-4-nitrotetrahydro-2H-pyran-2-yl]oxy}-2-methyltetrahydro-2H-pyran-3-yl 3,5-dichloro-4-hydroxy-2-methoxy-6-methylbenzoate (non-preferred name), 16S Ribosomal RNA, ...
Authors:Arenz, S, Juette, M.F, Graf, M, Nguyen, F, Huter, P, Polikanov, Y.S, Blanchard, S.C, Wilson, D.N.
Deposit date:2016-06-06
Release date:2016-08-17
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures of the orthosomycin antibiotics avilamycin and evernimicin in complex with the bacterial 70S ribosome.
Proc.Natl.Acad.Sci.USA, 113, 2016
5KCR
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Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
Descriptor: (2R,3S,4R,6S)-4-hydroxy-6-{[(2R,3aR,4R,4'R,5'S,6S,6'R,7aR)-4'-hydroxy-6-{[(2S,3R,4R,5S,6R)-3-hydroxy-2-{[(2R,3S,4S,5S,6S)-4-hydroxy-6-({(2R,3aS,3a'R,6S,6'R,7R,7'R,7aR,7a'R)-7'-hydroxy-7'-[(1S)-1-hydroxyethyl]-6'-methyl-7-[(2-methylpropanoyl)oxy]octahydro-4H-2,4'-spirobi[[1,3]dioxolo[4,5-c]pyran]-6-yl}oxy)-5-methoxy-2-(methoxymethyl)tetrahydro-2H-pyran-3-yl]oxy}-5-methoxy-6-methyltetrahydro-2H-pyran-4-yl]oxy}-4,6',7a-trimethyloctahydro-4H-spiro[1,3-dioxolo[4,5-c]pyran-2,2'-pyran]-5'-yl]oxy}-2-methyltetrahydro-2H-pyran-3-yl 3,5-dichloro-4-hydroxy-2-methoxy-6-methylbenzoate (non-preferred name), 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Arenz, S, Juette, M.F, Graf, M, Nguyen, F, Huter, P, Polikanov, Y.S, Blanchard, S.C, Wilson, D.N.
Deposit date:2016-06-06
Release date:2016-08-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of the orthosomycin antibiotics avilamycin and evernimicin in complex with the bacterial 70S ribosome.
Proc.Natl.Acad.Sci.USA, 113, 2016
7QOV
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BU of 7qov by Molmil
The wild type nitrile hydratase from Geobacillus pallidus
Descriptor: CHLORIDE ION, COBALT (III) ION, Nitrile hydratase, ...
Authors:Van Wyk, J.C, Cowan, D.A, Danson, M.J, Tsekoa, T.L, Sayed, M.F, Sewell, B.T.
Deposit date:2021-12-29
Release date:2023-01-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Engineering enhanced thermostability into the Geobacillus pallidus nitrile hydratase.
Curr Res Struct Biol, 4, 2022
7QOU
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BU of 7qou by Molmil
A mutant of the nitrile hydratase from Geobacillus pallidus having enhanced thermostability
Descriptor: CHLORIDE ION, COBALT (II) ION, MAGNESIUM ION, ...
Authors:Van Wyk, J.C, Cowan, D.A, Danson, M.J, Tsekoa, T.L, Sayed, M.F, Sewell, B.T.
Deposit date:2021-12-29
Release date:2023-01-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Engineering enhanced thermostability into the Geobacillus pallidus nitrile hydratase.
Curr Res Struct Biol, 4, 2022

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PDB entries from 2024-11-06

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