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PDB: 472 results

6AE5
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Crystals structure of Classical swine fever virus NS5B (residues 1-672, Y471A mutant, form 1)
Descriptor: RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2018-08-03
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.754 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
6JJ0
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NMR structure of the 1:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex
Descriptor: 3,6-bis[(E)-2-(1-methylpyridin-1-ium-4-yl)ethenyl]-9H-carbazole, MycG4
Authors:Liu, W, Lin, C, Yang, D.
Deposit date:2019-02-24
Release date:2019-10-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structures of 1:1 and 2:1 complexes of BMVC and MYC promoter G-quadruplex reveal a mechanism of ligand conformation adjustment for G4-recognition.
Nucleic Acids Res., 47, 2019
6K63
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The crystal structure of cytidine deaminase from Klebsiella pneumoniae
Descriptor: 1,4-DIETHYLENE DIOXIDE, Cytidine deaminase, ZINC ION
Authors:Liu, W, Shang, F, Lan, J, Chen, Y, Wang, L, Xu, Y.
Deposit date:2019-06-01
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.073 Å)
Cite:Biochemical and structural analysis of the Klebsiella pneumoniae cytidine deaminase CDA.
Biochem.Biophys.Res.Commun., 519, 2019
7V3T
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Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands
Descriptor: 11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene, TBA G4 DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Liu, W, Zhu, B.C, Mao, Z.W.
Deposit date:2021-08-11
Release date:2022-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.
Chem Sci, 13, 2022
5YF8
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Crystals structure of Classical swine fever virus NS5B (residues 1-672, Y471A-E472A mutant)
Descriptor: ACETATE ION, RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2017-09-20
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.396 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
5YF6
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Crystals structure of Classical swine fever virus NS5B (residues 1-682)
Descriptor: RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2017-09-20
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
5YF7
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BU of 5yf7 by Molmil
Crystals structure of Classical swine fever virus NS5B (residues 1-672)
Descriptor: RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2017-09-20
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
5YF5
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Crystals structure of Classical swine fever virus NS5B (residues 1-694)
Descriptor: RdRp catalytic
Authors:Liu, W, Gong, P.
Deposit date:2017-09-20
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase.
Nucleic Acids Res., 46, 2018
8HZQ
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BU of 8hzq by Molmil
Bacillus subtilis SepF protein assembly (wild type)
Descriptor: Cell division protein SepF
Authors:Liu, W.
Deposit date:2023-01-09
Release date:2024-02-14
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Molecular basis for curvature formation in SepF polymerization.
Proc.Natl.Acad.Sci.USA, 121, 2024
8HZT
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BU of 8hzt by Molmil
Bacillus subtilis SepF protein assembly (G137N mutant)
Descriptor: Cell division protein SepF
Authors:Liu, W.
Deposit date:2023-01-09
Release date:2024-02-14
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Molecular basis for curvature formation in SepF polymerization.
Proc.Natl.Acad.Sci.USA, 121, 2024
8J1I
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BU of 8j1i by Molmil
Crystal Structure of EphA8/SASH1 Complex
Descriptor: Ephrin type-A receptor 8, SAM and SH3 domain-containing protein 1
Authors:Liu, W, Li, J, Ding, Y.
Deposit date:2023-04-12
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of EphA8 and SASH1 complex at 1.60 Angstroms resolution
To Be Published
8I0A
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BU of 8i0a by Molmil
Structure of alpha-L-Arabinofuranosidase from Trametes hirsuta
Descriptor: alpha-L-arabinofuranosidase
Authors:Liu, W, Lu, M.L, Si, Z.Y, Han, L.
Deposit date:2023-01-10
Release date:2023-09-27
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure and function characterization of the alpha-L-arabinofuranosidase from the white-rot fungus Trametes hirsuta.
Appl.Microbiol.Biotechnol., 107, 2023
7EKJ
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BU of 7ekj by Molmil
Crystals structure of classical swine fever virus NS5B (residues 91-694)
Descriptor: Classical swine fever virus NS5B
Authors:Liu, W, Gong, P.
Deposit date:2021-04-05
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:An induced-fit de novo initiation mechanism suggested by a pestivirus RNA-dependent RNA polymerase.
Nucleic Acids Res., 49, 2021
4UXL
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BU of 4uxl by Molmil
Structure of Human ROS1 Kinase Domain in Complex with PF-06463922
Descriptor: (10R)-7-amino-12-fluoro-2,10,16-trimethyl-15-oxo-10,15,16,17-tetrahydro-2H-8,4-(metheno)pyrazolo[4,3-h][2,5,11]benzoxadiazacyclotetradecine-3-carbonitrile, PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ROS
Authors:McTigue, M, Deng, Y, Liu, W, Brooun, A, Stewart, A.
Deposit date:2014-08-25
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Pf-06463922 is a Potent and Selective Next-Generation Ros1/Alk Inhibitor Capable of Blocking Crizotinib-Resistant Ros1 Mutations.
Proc.Natl.Acad.Sci.USA, 112, 2015
7MG0
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BU of 7mg0 by Molmil
Crystal structure of EV-D68 2A protease
Descriptor: Protease 2A, ZINC ION
Authors:Liu, C, Lee, M.-Y, Liu, W, Wang, J.
Deposit date:2021-04-12
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of EV-D68 2A protease
To Be Published
4TUU
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BU of 4tuu by Molmil
Isolated p110a subunit of PI3Ka provides a platform for structure-based drug design
Descriptor: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Chen, P, Deng, Y.-L, Bergqvist, S, Falk, M, Liu, W, Timofeevski, S.
Deposit date:2014-06-24
Release date:2014-08-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Engineering of an isolated p110 alpha subunit of PI3K alpha permits crystallization and provides a platform for structure-based drug design.
Protein Sci., 23, 2014
4TV3
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BU of 4tv3 by Molmil
Isolated p110a subunit of PI3Ka provides a platform for structure-based drug design
Descriptor: 2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]-6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3-d]pyrimidin-7(8H)-one, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Chen, P, Deng, Y.-L, Bergqvist, S, Falk, M, Liu, W, Timofeevski, S.
Deposit date:2014-06-25
Release date:2014-08-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Engineering of an isolated p110 alpha subunit of PI3K alpha permits crystallization and provides a platform for structure-based drug design.
Protein Sci., 23, 2014
7RSM
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BU of 7rsm by Molmil
Crystal structure of pyrrolysyl-tRNA synthetase (N346D/C348S/Y384F) in complex with o-Chlorophenylalanine and AMP-PNP
Descriptor: 2-chloro-L-phenylalanine, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pyrrolysine--tRNA ligase
Authors:Yang, K, Liu, W.
Deposit date:2021-08-11
Release date:2022-07-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A Designed, Highly Efficient Pyrrolysyl-tRNA Synthetase Mutant Binds o-Chlorophenylalanine Using Two Halogen Bonds.
J.Mol.Biol., 434, 2022
5HFJ
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BU of 5hfj by Molmil
crystal structure of M1.HpyAVI-SAM complex
Descriptor: Adenine specific DNA methyltransferase (DpnA), S-ADENOSYLMETHIONINE
Authors:Ma, B, Liu, W, Zhang, H.
Deposit date:2016-01-07
Release date:2016-11-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Biochemical and structural characterization of a DNA N6-adenine methyltransferase from Helicobacter pylori
Oncotarget, 7, 2016
3CF8
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BU of 3cf8 by Molmil
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with quercetin
Descriptor: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, 3,5,7,3',4'-PENTAHYDROXYFLAVONE, BENZAMIDINE, ...
Authors:Zhang, L, Wu, D, Liu, W, Shen, X, Jiang, H.
Deposit date:2008-03-03
Release date:2008-12-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
3CF9
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Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with apigenin
Descriptor: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one, BENZAMIDINE, ...
Authors:Zhang, L, Wu, D, Liu, W, Shen, X, Jiang, H.
Deposit date:2008-03-03
Release date:2008-12-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three flavonoids targeting the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: crystal structure characterization with enzymatic inhibition assay
Protein Sci., 17, 2008
6KV9
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BU of 6kv9 by Molmil
MoeE5 in complex with UDP-glucuronic acid and NAD
Descriptor: MoeE5, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
Authors:Ko, T.-P, Liu, W, Sun, H, Liu, W, Chen, C.-C, Guo, R.-T.
Deposit date:2019-09-03
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structure of an antibiotic-synthesizing UDP-glucuronate 4-epimerase MoeE5 in complex with substrate.
Biochem.Biophys.Res.Commun., 521, 2020
5K2D
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BU of 5k2d by Molmil
1.9A angstrom A2a adenosine receptor structure with MR phasing using XFEL data
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, ...
Authors:Batyuk, A, Galli, L, Ishchenko, A, Han, G.W, Gati, C, Popov, P, Lee, M.-Y, Stauch, B, White, T.A, Barty, A, Aquila, A, Hunter, M.S, Liang, M, Boutet, S, Pu, M, Liu, Z.-J, Nelson, G, James, D, Li, C, Zhao, Y, Spence, J.C.H, Liu, W, Fromme, P, Katritch, V, Weierstall, U, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
Deposit date:2016-05-18
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv, 2, 2016
5K2C
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1.9 angstrom A2a adenosine receptor structure with sulfur SAD phasing and phase extension using XFEL data
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a/Soluble cytochrome b562 chimera, ...
Authors:Batyuk, A, Galli, L, Ishchenko, A, Han, G.W, Gati, C, Popov, P, Lee, M.-Y, Stauch, B, White, T.A, Barty, A, Aquila, A, Hunter, M.S, Liang, M, Boutet, S, Pu, M, Liu, Z.-J, Nelson, G, James, D, Li, C, Zhao, Y, Spence, J.C.H, Liu, W, Fromme, P, Katritch, V, Weierstall, U, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
Deposit date:2016-05-18
Release date:2016-09-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv, 2, 2016
5K2A
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2.5 angstrom A2a adenosine receptor structure with sulfur SAD phasing using XFEL data
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a/Soluble cytochrome b562 chimera, ...
Authors:Batyuk, A, Galli, L, Ishchenko, A, Han, G.W, Gati, C, Popov, P, Lee, M.-Y, Stauch, B, White, T.A, Barty, A, Aquila, A, Hunter, M.S, Liang, M, Boutet, S, Pu, M, Liu, Z.-J, Nelson, G, James, D, Li, C, Zhao, Y, Spence, J.C.H, Liu, W, Fromme, P, Katritch, V, Weierstall, U, Stevens, R.C, Cherezov, V, GPCR Network (GPCR)
Deposit date:2016-05-18
Release date:2016-09-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv, 2, 2016

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