Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 505 results

3P40
DownloadVisualize
BU of 3p40 by Molmil
Crystal structure of neurofascin adhesion complex in space group p3221
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neurofascin
Authors:Liu, H, He, X.
Deposit date:2010-10-05
Release date:2010-11-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Homophilic adhesion mechanism of neurofascin, a member of the l1 family of neural cell adhesion molecules.
J.Biol.Chem., 286, 2011
2O26
DownloadVisualize
BU of 2o26 by Molmil
Structure of a class III RTK signaling assembly
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Kit ligand, Mast/stem cell growth factor receptor, ...
Authors:Liu, H, Chen, X, Focia, P.J, He, X.
Deposit date:2006-11-29
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for stem cell factor-KIT signaling and activation of class III receptor tyrosine kinases.
Embo J., 26, 2007
4JQE
DownloadVisualize
BU of 4jqe by Molmil
Crystal structure of scCK2 alpha in complex with AMPPN
Descriptor: Casein kinase II subunit alpha, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Liu, H.
Deposit date:2013-03-20
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway.
Acta Crystallogr.,Sect.D, 70, 2014
3P3Y
DownloadVisualize
BU of 3p3y by Molmil
Crystal structure of neurofascin homophilic adhesion complex in space group p6522
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neurofascin
Authors:Liu, H, He, X.
Deposit date:2010-10-05
Release date:2010-11-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Homophilic adhesion mechanism of neurofascin, a member of the l1 family of neural cell adhesion molecules.
J.Biol.Chem., 286, 2011
4JR7
DownloadVisualize
BU of 4jr7 by Molmil
Crystal structure of scCK2 alpha in complex with GMPPNP
Descriptor: Casein kinase II subunit alpha, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Liu, H.
Deposit date:2013-03-21
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway.
Acta Crystallogr.,Sect.D, 70, 2014
4H5U
DownloadVisualize
BU of 4h5u by Molmil
Structural insights into yeast Nit2: wild-type yeast Nit2
Descriptor: CACODYLATE ION, GLYCEROL, Probable hydrolase NIT2
Authors:Liu, H, Qiu, X, Zhang, M, Gao, Y, Niu, L, Teng, M.
Deposit date:2012-09-18
Release date:2013-07-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
Acta Crystallogr.,Sect.D, 69, 2013
4HG5
DownloadVisualize
BU of 4hg5 by Molmil
Structural insights into yeast Nit2: wild-type yeast Nit2 in complex with oxaloacetate
Descriptor: CACODYLATE ION, GLYCEROL, OXALOACETATE ION, ...
Authors:Liu, H, Qiu, X, Zhang, M, Gao, Y, Niu, L, Teng, M.
Deposit date:2012-10-07
Release date:2013-07-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
Acta Crystallogr.,Sect.D, 69, 2013
5ZVT
DownloadVisualize
BU of 5zvt by Molmil
Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly
Descriptor: C-terminus of outer capsid protein VP5, Core protein VP6, MYRISTIC ACID, ...
Authors:Liu, H, Fang, Q, Cheng, L.
Deposit date:2018-05-12
Release date:2018-07-04
Last modified:2018-07-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5FBJ
DownloadVisualize
BU of 5fbj by Molmil
Complex structure of JMJD5 and substrate
Descriptor: (2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid, 2-OXOGLUTARIC ACID, Lysine-specific demethylase 8, ...
Authors:Liu, H.L, Wang, Y, Wang, C, Zhang, G.Y.
Deposit date:2015-12-14
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:to be published
To Be Published
4HGD
DownloadVisualize
BU of 4hgd by Molmil
Structural insights into yeast Nit2: C169S mutant of yeast Nit2 in complex with an endogenous peptide-like ligand
Descriptor: CACODYLATE ION, GLYCEROL, N-(4-carboxy-4-oxobutanoyl)-L-cysteinylglycine, ...
Authors:Liu, H, Qiu, X, Zhang, M, Gao, Y, Niu, L, Teng, M.
Deposit date:2012-10-08
Release date:2013-07-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
Acta Crystallogr.,Sect.D, 69, 2013
4HG3
DownloadVisualize
BU of 4hg3 by Molmil
Structural insights into yeast Nit2: wild-type yeast Nit2 in complex with alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, CACODYLATE ION, GLYCEROL, ...
Authors:Liu, H, Qiu, X, Zhang, M, Gao, Y, Niu, L, Teng, M.
Deposit date:2012-10-06
Release date:2013-07-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2
Acta Crystallogr.,Sect.D, 69, 2013
6C1Q
DownloadVisualize
BU of 6c1q by Molmil
Crystal structure of human C5a receptor in complex with an orthosteric antagonist PMX53 and an allosteric antagonist NDT9513727
Descriptor: 1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine, PMX53, Soluble cytochrome b562, ...
Authors:Liu, H, Wang, L, Wei, Z, Zhang, C.
Deposit date:2018-01-05
Release date:2018-05-30
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Orthosteric and allosteric action of the C5a receptor antagonists.
Nat. Struct. Mol. Biol., 25, 2018
6C1R
DownloadVisualize
BU of 6c1r by Molmil
Crystal structure of human C5a receptor in complex with an orthosteric antagonist PMX53 and an allosteric antagonist avacopan
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MALONATE ION, OLEIC ACID, ...
Authors:Liu, H, Wang, L, Wei, Z, Zhang, C.
Deposit date:2018-01-05
Release date:2018-05-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Orthosteric and allosteric action of the C5a receptor antagonists.
Nat. Struct. Mol. Biol., 25, 2018
7D32
DownloadVisualize
BU of 7d32 by Molmil
The TBA-Pb2+ complex in P41212 space group
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
7D33
DownloadVisualize
BU of 7d33 by Molmil
The Pb2+ complexed structure of TBA G8C mutant
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*CP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
4LFI
DownloadVisualize
BU of 4lfi by Molmil
Crystal structure of scCK2 alpha in complex with GMPPNP
Descriptor: Casein kinase II subunit alpha, GLYCEROL, MANGANESE (II) ION, ...
Authors:Liu, H.
Deposit date:2013-06-27
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway.
Acta Crystallogr.,Sect.D, 70, 2014
4MWH
DownloadVisualize
BU of 4mwh by Molmil
Crystal structure of scCK2 alpha in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Casein kinase II subunit alpha, MAGNESIUM ION, ...
Authors:Liu, H.
Deposit date:2013-09-24
Release date:2013-11-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway.
Acta Crystallogr.,Sect.D, 70, 2014
8J19
DownloadVisualize
BU of 8j19 by Molmil
Cryo-EM structure of the LY237-bound GPR84 receptor-Gi complex
Descriptor: 6-nonylpyridine-2,4-diol, Antibody fragment ScFv16, G-protein coupled receptor 84, ...
Authors:Liu, H, Yin, W, Xu, H.E.
Deposit date:2023-04-12
Release date:2023-06-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural insights into ligand recognition and activation of the medium-chain fatty acid-sensing receptor GPR84.
Nat Commun, 14, 2023
8J1A
DownloadVisualize
BU of 8j1a by Molmil
Cryo-EM structure of the GPR84 receptor-Gi complex with no ligand modeled
Descriptor: Antibody fragment ScFv16, G-protein coupled receptor 84, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Liu, H, Yin, W, Xu, H.E.
Deposit date:2023-04-12
Release date:2023-06-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Structural insights into ligand recognition and activation of the medium-chain fatty acid-sensing receptor GPR84.
Nat Commun, 14, 2023
8J18
DownloadVisualize
BU of 8j18 by Molmil
Cryo-EM structure of the 3-OH-C12-bound GPR84 receptor-Gi complex
Descriptor: (3R)-3-HYDROXYDODECANOIC ACID, Antibody fragment ScFv16, G-protein coupled receptor 84, ...
Authors:Liu, H, Yin, W, Xu, H.E.
Deposit date:2023-04-12
Release date:2023-06-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structural insights into ligand recognition and activation of the medium-chain fatty acid-sensing receptor GPR84.
Nat Commun, 14, 2023
5ZVS
DownloadVisualize
BU of 5zvs by Molmil
Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly
Descriptor: Putative core protein NTPase/VP5, VP2, VP3
Authors:Liu, H, Fang, Q, Cheng, L.
Deposit date:2018-05-12
Release date:2018-07-04
Last modified:2018-07-25
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7D31
DownloadVisualize
BU of 7d31 by Molmil
The TBA-Pb2+ complex in P41212 space group
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION
Authors:Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H.
Deposit date:2020-09-18
Release date:2021-09-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.396 Å)
Cite:Structure-guided development of Pb 2+ -binding DNA aptamers.
Sci Rep, 12, 2022
5XMA
DownloadVisualize
BU of 5xma by Molmil
Crystal structure of AsfvPolX in complex with DNA enzyme at P43212 space group
Descriptor: DNA (36-MER), DNA/RNA (5'-D(*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*T)-R(P*G)-D(P*GP*GP*TP*GP*CP*GP*TP*TP*AP*CP*A)-3'), Repair DNA polymerase X
Authors:Liu, H.H, Gan, J.H.
Deposit date:2017-05-13
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal structure of an RNA-cleaving DNAzyme.
Nat Commun, 8, 2017
2O27
DownloadVisualize
BU of 2o27 by Molmil
Structure of a class III RTK signaling assembly
Descriptor: Kit ligand
Authors:Liu, H, Chen, X, Focia, P, He, X.
Deposit date:2006-11-29
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for stem cell factor-KIT signaling and activation of class III receptor tyrosine kinases.
Embo J., 26, 2007
8H89
DownloadVisualize
BU of 8h89 by Molmil
Capsid of Ralstonia phage GP4
Descriptor: Major capsid protein, Virion associated protein
Authors:Liu, H.R, Chen, W.Y.
Deposit date:2022-10-22
Release date:2022-11-16
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A Capsid Structure of Ralstonia solanacearum podoviridae GP4 with a Triangulation Number T = 9.
Viruses, 14, 2022

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon