Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 217 results

1EYF
DownloadVisualize
BU of 1eyf by Molmil
REFINED STRUCTURE OF THE DNA METHYL PHOSPHOTRIESTER REPAIR DOMAIN OF E. COLI ADA
Descriptor: ADA REGULATORY PROTEIN, ZINC ION
Authors:Lin, Y, Dotsch, V, Wintner, T, Peariso, K, Myers, L.C, Penner-Hahn, J.E, Verdine, G.L, Wagner, G.
Deposit date:2000-05-06
Release date:2003-09-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis for the functional switch of the E. coli Ada protein
Biochemistry, 40, 2001
6QII
DownloadVisualize
BU of 6qii by Molmil
Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-19
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGT
DownloadVisualize
BU of 6qgt by Molmil
The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.988 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGR
DownloadVisualize
BU of 6qgr by Molmil
The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.839 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
1TRK
DownloadVisualize
BU of 1trk by Molmil
REFINED STRUCTURE OF TRANSKETOLASE FROM SACCHAROMYCES CEREVISIAE AT 2.0 ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, THIAMINE DIPHOSPHATE, TRANSKETOLASE
Authors:Lindqvist, Y, Schneider, G, Nikkola, M.
Deposit date:1993-11-22
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Refined structure of transketolase from Saccharomyces cerevisiae at 2.0 A resolution.
J.Mol.Biol., 238, 1994
4KPR
DownloadVisualize
BU of 4kpr by Molmil
Tetrameric form of rat selenoprotein thioredoxin reductase 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, SULFITE ION, ...
Authors:Lindqvist, Y, Sandalova, T, Xu, J, Arner, E.
Deposit date:2013-05-14
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Trp114 residue of thioredoxin reductase 1 is an electron relay sensor for oxidative stress
To be Published, 2013
1GOX
DownloadVisualize
BU of 1gox by Molmil
REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RESOLUTION
Descriptor: (S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL, FLAVIN MONONUCLEOTIDE
Authors:Lindqvist, Y.
Deposit date:1989-06-14
Release date:1989-10-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Refined structure of spinach glycolate oxidase at 2 A resolution.
J.Mol.Biol., 209, 1989
3IHG
DownloadVisualize
BU of 3ihg by Molmil
Crystal structure of a ternary complex of aklavinone-11 hydroxylase with FAD and aklavinone
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, RdmE, SULFATE ION, ...
Authors:Lindqvist, Y, Koskiniemi, H, Jansson, A, Sandalova, T, Schneider, G.
Deposit date:2009-07-30
Release date:2009-09-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis for substrate recognition and specificity in aklavinone-11-hydroxylase from rhodomycin biosynthesis.
J.Mol.Biol., 393, 2009
1QHW
DownloadVisualize
BU of 1qhw by Molmil
PURPLE ACID PHOSPHATASE FROM RAT BONE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FE (III) ION, PROTEIN (PURPLE ACID PHOSPHATASE), ...
Authors:Lindqvist, Y, Johansson, E, Kaija, H, Vihko, P, Schneider, G.
Deposit date:1999-03-26
Release date:1999-09-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of a mammalian purple acid phosphatase at 2.2 A resolution with a mu-(hydr)oxo bridged di-iron center.
J.Mol.Biol., 291, 1999
1GYL
DownloadVisualize
BU of 1gyl by Molmil
INVOLVEMENT OF TYR24 AND TRP108 IN SUBSTRATE BINDING AND SUBSTRATE SPECIFICITY OF GLYCOLATE OXIDASE
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCOLATE OXIDASE
Authors:Lindqvist, Y, Stenberg, K.
Deposit date:1995-01-30
Release date:1995-03-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Involvement of Tyr24 and Trp108 in substrate binding and substrate specificity of glycolate oxidase.
Eur.J.Biochem., 228, 1995
1I2A
DownloadVisualize
BU of 1i2a by Molmil
CRYSTAL STRUCTURE OF L1 RIBOSOMAL PROTEIN FROM METHANOCOCCUS JANNASCHII WITH 1.85A RESOLUTION.
Descriptor: 50S RIBOSOMAL PROTEIN L1P, PENTANAL
Authors:Smolinskaya, Y, Nikonov, S.V.
Deposit date:2001-02-07
Release date:2003-12-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:

1RPT
DownloadVisualize
BU of 1rpt by Molmil
CRYSTAL STRUCTURES OF RAT ACID PHOSPHATASE COMPLEXED WITH THE TRANSITIONS STATE ANALOGS VANADATE AND MOLYBDATE: IMPLICATIONS FOR THE REACTION MECHANISM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROSTATIC ACID PHOSPHATASE, VANADATE ION, ...
Authors:Lindqvist, Y, Schneider, G.
Deposit date:1993-11-29
Release date:1994-05-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of rat acid phosphatase complexed with the transition-state analogs vanadate and molybdate. Implications for the reaction mechanism.
Eur.J.Biochem., 221, 1994
1RPA
DownloadVisualize
BU of 1rpa by Molmil
THREE-DIMENSIONAL STRUCTURE OF RAT ACID PHOSPHATASE IN COMPLEX WITH L(+) TARTRATE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D(-)-TARTARIC ACID, PROSTATIC ACID PHOSPHATASE, ...
Authors:Lindqvist, Y, Schneider, G.
Deposit date:1993-06-12
Release date:1994-05-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Three-dimensional structure of rat acid phosphatase in complex with L(+)-tartrate.
J.Biol.Chem., 268, 1993
4QQN
DownloadVisualize
BU of 4qqn by Molmil
Protein arginine methyltransferase 3 in complex with compound MTV044246
Descriptor: 1-{2-[1-(aminomethyl)cyclohexyl]ethyl}-3-isoquinolin-6-ylurea, CHLORIDE ION, GLYCEROL, ...
Authors:Dong, A, Dobrovetsky, E, Tempel, W, He, H, Zhao, K, Smil, D, Landon, M, Luo, X, Chen, Z, Dai, M, Yu, Z, Lin, Y, Zhang, H, Zhao, K, Schapira, M, Brown, P.J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Discovery of Potent and Selective Allosteric Inhibitors of Protein Arginine Methyltransferase 3 (PRMT3).
J. Med. Chem., 61, 2018
4RYL
DownloadVisualize
BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
8IMZ
DownloadVisualize
BU of 8imz by Molmil
Cryo-EM structure of mouse Piezo1-MDFIC complex (composite map)
Descriptor: MyoD family inhibitor domain-containing protein, Piezo-type mechanosensitive ion channel component 1
Authors:Zhou, Z, Ma, X, Lin, Y, Cheng, D, Bavi, N, Li, J.V, Sutton, D, Yao, M, Harvey, N, Corry, B, Zhang, Y, Cox, C.D.
Deposit date:2023-03-07
Release date:2023-08-09
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:MyoD-family inhibitor proteins act as auxiliary subunits of Piezo channels.
Science, 381, 2023
4LMY
DownloadVisualize
BU of 4lmy by Molmil
Structure of GAS PerR-Zn-Zn
Descriptor: Peroxide stress regulator PerR, FUR family, ZINC ION
Authors:Lin, C.S, Chao, S.Y, Nix, J.C, Tseng, H.L, Tsou, C.C, Fei, C.H, Ciou, H.S, Jeng, U.S, Lin, Y.S, Chuang, W.J, Wu, J.J, Wang, S.
Deposit date:2013-07-11
Release date:2014-04-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Distinct structural features of the peroxide response regulator from group a streptococcus drive DNA binding
Plos One, 9, 2014
5W3N
DownloadVisualize
BU of 5w3n by Molmil
Molecular structure of FUS low sequence complexity domain protein fibrils
Descriptor: RNA-binding protein FUS
Authors:Murray, D.T, Kato, M, Lin, Y, Thurber, K, Hung, I, McKnight, S, Tycko, R.
Deposit date:2017-06-08
Release date:2017-09-27
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.
Cell, 171, 2017
3JBB
DownloadVisualize
BU of 3jbb by Molmil
Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
Descriptor: PHYCOCYANOBILIN, SULFATE ION, allophycocyanin beta chain, ...
Authors:Li, Y, Lin, Y, Garvey, C, Birch, D, Corkery, R.W, Loughlin, P.C, Scheer, H, Willows, R.D, Chen, M.
Deposit date:2015-08-26
Release date:2015-11-11
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris.
Biochim.Biophys.Acta, 1857, 2015
6QNN
DownloadVisualize
BU of 6qnn by Molmil
CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO GTSE1 LIDL MOTIF
Descriptor: Clathrin heavy chain 1, G2 and S phase-expressed protein 1
Authors:Porfetye, A.T, Lin, Y, Vetter, I.R.
Deposit date:2019-02-11
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Clathrin's adaptor interaction sites are repurposed to stabilize microtubules during mitosis.
J.Cell Biol., 219, 2020
6QNP
DownloadVisualize
BU of 6qnp by Molmil
CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO GTSE1 LIDL MOTIF
Descriptor: Clathrin heavy chain 1, G2 and S phase-expressed protein 1
Authors:Porfetye, A.T, Lin, Y, Vetter, I.R.
Deposit date:2019-02-11
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Clathrin's adaptor interaction sites are repurposed to stabilize microtubules during mitosis.
J.Cell Biol., 219, 2020
2J2F
DownloadVisualize
BU of 2j2f by Molmil
The T199D Mutant of Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean)
Descriptor: ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, FE (III) ION
Authors:Guy, J.E, Abreu, I.A, Moche, M, Lindqvist, Y, Whittle, E, Shanklin, J.
Deposit date:2006-08-16
Release date:2006-10-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Single Mutation in the Castor {Delta}9-18:0- Desaturase Changes Reaction Partitioning from Desaturation to Oxidase Chemistry.
Proc.Natl.Acad.Sci.USA, 103, 2006
4MDR
DownloadVisualize
BU of 4mdr by Molmil
Crystal structure of adaptor protein complex 4 (AP-4) mu4 subunit C-terminal domain D190A mutant, in complex with a sorting peptide from the amyloid precursor protein (APP)
Descriptor: AP-4 complex subunit mu-1, Amyloid beta A4 protein
Authors:Ross, B.H, Lin, Y, Corales, E.A, Burgos, P.V, Mardones, G.A.
Deposit date:2013-08-23
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Functional Characterization of Cargo-Binding Sites on the mu 4-Subunit of Adaptor Protein Complex 4.
Plos One, 9, 2014
3SHB
DownloadVisualize
BU of 3shb by Molmil
Crystal Structure of PHD Domain of UHRF1
Descriptor: E3 ubiquitin-protein ligase UHRF1, Histone H3 peptide, ZINC ION
Authors:Hu, L, Li, Z, Wang, P, Lin, Y, Xu, Y.
Deposit date:2011-06-16
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of PHD domain of UHRF1 and insights into recognition of unmodified histone H3 arginine residue 2.
Cell Res., 2011
2VJQ
DownloadVisualize
BU of 2vjq by Molmil
Formyl-CoA transferase mutant variant W48Q
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FORMYL-COENZYME A TRANSFERASE
Authors:Toyota, C.G, Berthold, C.L, Gruez, A, Jonsson, S, Lindqvist, Y, Cambillau, C, Richards, N.G.J.
Deposit date:2007-12-11
Release date:2008-01-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Differential Substrate Specificity and Kinetic Behavior of Escherichia Coli Yfdw and Oxalobacter Formigenes Formyl Coenzyme a Transferase.
J.Bacteriol., 190, 2008

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon