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PDB: 216 results

6QGR
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The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.839 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGT
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The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.988 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QII
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Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-19
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
1AFR
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STEAROYL-ACYL CARRIER PROTEIN DESATURASE FROM CASTOR SEEDS
Descriptor: DELTA9 STEAROYL-ACYL CARRIER PROTEIN DESATURASE, FE (II) ION
Authors:Lindqvist, Y, Huang, W, Schneider, G.
Deposit date:1997-03-13
Release date:1997-05-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of delta9 stearoyl-acyl carrier protein desaturase from castor seed and its relationship to other di-iron proteins.
EMBO J., 15, 1996
1TRK
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REFINED STRUCTURE OF TRANSKETOLASE FROM SACCHAROMYCES CEREVISIAE AT 2.0 ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, THIAMINE DIPHOSPHATE, TRANSKETOLASE
Authors:Lindqvist, Y, Schneider, G, Nikkola, M.
Deposit date:1993-11-22
Release date:1994-04-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Refined structure of transketolase from Saccharomyces cerevisiae at 2.0 A resolution.
J.Mol.Biol., 238, 1994
1RPA
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BU of 1rpa by Molmil
THREE-DIMENSIONAL STRUCTURE OF RAT ACID PHOSPHATASE IN COMPLEX WITH L(+) TARTRATE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D(-)-TARTARIC ACID, PROSTATIC ACID PHOSPHATASE, ...
Authors:Lindqvist, Y, Schneider, G.
Deposit date:1993-06-12
Release date:1994-05-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Three-dimensional structure of rat acid phosphatase in complex with L(+)-tartrate.
J.Biol.Chem., 268, 1993
1RPT
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CRYSTAL STRUCTURES OF RAT ACID PHOSPHATASE COMPLEXED WITH THE TRANSITIONS STATE ANALOGS VANADATE AND MOLYBDATE: IMPLICATIONS FOR THE REACTION MECHANISM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROSTATIC ACID PHOSPHATASE, VANADATE ION, ...
Authors:Lindqvist, Y, Schneider, G.
Deposit date:1993-11-29
Release date:1994-05-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of rat acid phosphatase complexed with the transition-state analogs vanadate and molybdate. Implications for the reaction mechanism.
Eur.J.Biochem., 221, 1994
1QHW
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PURPLE ACID PHOSPHATASE FROM RAT BONE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FE (III) ION, PROTEIN (PURPLE ACID PHOSPHATASE), ...
Authors:Lindqvist, Y, Johansson, E, Kaija, H, Vihko, P, Schneider, G.
Deposit date:1999-03-26
Release date:1999-09-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of a mammalian purple acid phosphatase at 2.2 A resolution with a mu-(hydr)oxo bridged di-iron center.
J.Mol.Biol., 291, 1999
1GOX
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BU of 1gox by Molmil
REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RESOLUTION
Descriptor: (S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL, FLAVIN MONONUCLEOTIDE
Authors:Lindqvist, Y.
Deposit date:1989-06-14
Release date:1989-10-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Refined structure of spinach glycolate oxidase at 2 A resolution.
J.Mol.Biol., 209, 1989
1GYL
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INVOLVEMENT OF TYR24 AND TRP108 IN SUBSTRATE BINDING AND SUBSTRATE SPECIFICITY OF GLYCOLATE OXIDASE
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCOLATE OXIDASE
Authors:Lindqvist, Y, Stenberg, K.
Deposit date:1995-01-30
Release date:1995-03-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Involvement of Tyr24 and Trp108 in substrate binding and substrate specificity of glycolate oxidase.
Eur.J.Biochem., 228, 1995
3IHG
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BU of 3ihg by Molmil
Crystal structure of a ternary complex of aklavinone-11 hydroxylase with FAD and aklavinone
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, RdmE, SULFATE ION, ...
Authors:Lindqvist, Y, Koskiniemi, H, Jansson, A, Sandalova, T, Schneider, G.
Deposit date:2009-07-30
Release date:2009-09-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis for substrate recognition and specificity in aklavinone-11-hydroxylase from rhodomycin biosynthesis.
J.Mol.Biol., 393, 2009
1I2A
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BU of 1i2a by Molmil
CRYSTAL STRUCTURE OF L1 RIBOSOMAL PROTEIN FROM METHANOCOCCUS JANNASCHII WITH 1.85A RESOLUTION.
Descriptor: 50S RIBOSOMAL PROTEIN L1P, PENTANAL
Authors:Smolinskaya, Y, Nikonov, S.V.
Deposit date:2001-02-07
Release date:2003-12-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:

4KPR
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Tetrameric form of rat selenoprotein thioredoxin reductase 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, SULFITE ION, ...
Authors:Lindqvist, Y, Sandalova, T, Xu, J, Arner, E.
Deposit date:2013-05-14
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Trp114 residue of thioredoxin reductase 1 is an electron relay sensor for oxidative stress
To be Published, 2013
5W3N
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BU of 5w3n by Molmil
Molecular structure of FUS low sequence complexity domain protein fibrils
Descriptor: RNA-binding protein FUS
Authors:Murray, D.T, Kato, M, Lin, Y, Thurber, K, Hung, I, McKnight, S, Tycko, R.
Deposit date:2017-06-08
Release date:2017-09-27
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.
Cell, 171, 2017
8IMZ
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BU of 8imz by Molmil
Cryo-EM structure of mouse Piezo1-MDFIC complex (composite map)
Descriptor: MyoD family inhibitor domain-containing protein, Piezo-type mechanosensitive ion channel component 1
Authors:Zhou, Z, Ma, X, Lin, Y, Cheng, D, Bavi, N, Li, J.V, Sutton, D, Yao, M, Harvey, N, Corry, B, Zhang, Y, Cox, C.D.
Deposit date:2023-03-07
Release date:2023-08-09
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:MyoD-family inhibitor proteins act as auxiliary subunits of Piezo channels.
Science, 381, 2023
4MDR
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BU of 4mdr by Molmil
Crystal structure of adaptor protein complex 4 (AP-4) mu4 subunit C-terminal domain D190A mutant, in complex with a sorting peptide from the amyloid precursor protein (APP)
Descriptor: AP-4 complex subunit mu-1, Amyloid beta A4 protein
Authors:Ross, B.H, Lin, Y, Corales, E.A, Burgos, P.V, Mardones, G.A.
Deposit date:2013-08-23
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Functional Characterization of Cargo-Binding Sites on the mu 4-Subunit of Adaptor Protein Complex 4.
Plos One, 9, 2014
4RYL
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BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
4QQN
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Protein arginine methyltransferase 3 in complex with compound MTV044246
Descriptor: 1-{2-[1-(aminomethyl)cyclohexyl]ethyl}-3-isoquinolin-6-ylurea, CHLORIDE ION, GLYCEROL, ...
Authors:Dong, A, Dobrovetsky, E, Tempel, W, He, H, Zhao, K, Smil, D, Landon, M, Luo, X, Chen, Z, Dai, M, Yu, Z, Lin, Y, Zhang, H, Zhao, K, Schapira, M, Brown, P.J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Discovery of Potent and Selective Allosteric Inhibitors of Protein Arginine Methyltransferase 3 (PRMT3).
J. Med. Chem., 61, 2018
2J2F
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BU of 2j2f by Molmil
The T199D Mutant of Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean)
Descriptor: ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, FE (III) ION
Authors:Guy, J.E, Abreu, I.A, Moche, M, Lindqvist, Y, Whittle, E, Shanklin, J.
Deposit date:2006-08-16
Release date:2006-10-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A Single Mutation in the Castor {Delta}9-18:0- Desaturase Changes Reaction Partitioning from Desaturation to Oxidase Chemistry.
Proc.Natl.Acad.Sci.USA, 103, 2006
3JBB
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BU of 3jbb by Molmil
Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
Descriptor: PHYCOCYANOBILIN, SULFATE ION, allophycocyanin beta chain, ...
Authors:Li, Y, Lin, Y, Garvey, C, Birch, D, Corkery, R.W, Loughlin, P.C, Scheer, H, Willows, R.D, Chen, M.
Deposit date:2015-08-26
Release date:2015-11-11
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris.
Biochim.Biophys.Acta, 1857, 2015
2W0U
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CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH THE INHIBITOR 5-[(4-CHLOROPHENYL)SULFANYL]- 1,2,3-THIADIAZOLE-4-CARBOXYLATE.
Descriptor: 5-[(4-chlorophenyl)sulfanyl]-1,2,3-thiadiazole-4-carboxylate, FLAVIN MONONUCLEOTIDE, HYDROXYACID OXIDASE 1
Authors:Bourhis, J.M, Lindqvist, Y.
Deposit date:2008-10-10
Release date:2009-11-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structure of Human Glycolate Oxidase in Complex with the Inhibitor 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1,2,3-Thiadiazole.
Acta Crystallogr.,Sect.F, 65, 2009
2WG9
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BU of 2wg9 by Molmil
Structure of Oryza Sativa (Rice) PLA2, complex with octanoic acid
Descriptor: CALCIUM ION, OCTANOIC ACID (CAPRYLIC ACID), PUTATIVE PHOSPHOLIPASE A2, ...
Authors:Guy, J.E, Stahl, U, Lindqvist, Y.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Class Xib Phospholipase A2 (Pla2): Rice (Oryza Sativa) Isoform-2 Pla2 and an Octanoate Complex.
J.Biol.Chem., 284, 2009
2WG7
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BU of 2wg7 by Molmil
Structure of Oryza Sativa (Rice) PLA2
Descriptor: CALCIUM ION, PUTATIVE PHOSPHOLIPASE A2, SODIUM ION
Authors:Guy, J.E, Stahl, U, Lindqvist, Y.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Class Xib Phospholipase A2 (Pla2): Rice (Oryza Sativa) Isoform-2 Pla2 and an Octanoate Complex.
J.Biol.Chem., 284, 2009
6QNN
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CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO GTSE1 LIDL MOTIF
Descriptor: Clathrin heavy chain 1, G2 and S phase-expressed protein 1
Authors:Porfetye, A.T, Lin, Y, Vetter, I.R.
Deposit date:2019-02-11
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Clathrin's adaptor interaction sites are repurposed to stabilize microtubules during mitosis.
J.Cell Biol., 219, 2020
6QNP
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CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO GTSE1 LIDL MOTIF
Descriptor: Clathrin heavy chain 1, G2 and S phase-expressed protein 1
Authors:Porfetye, A.T, Lin, Y, Vetter, I.R.
Deposit date:2019-02-11
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Clathrin's adaptor interaction sites are repurposed to stabilize microtubules during mitosis.
J.Cell Biol., 219, 2020

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