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PDB: 461 results

5JLT
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The crystal structure of the bacteriophage T4 MotA C-terminal domain in complex with dsDNA reveals a novel protein-DNA recognition motif
Descriptor: DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*TP*GP*CP*TP*TP*AP*AP*TP*AP*AP*TP*CP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*GP*AP*TP*TP*AP*TP*TP*AP*AP*GP*CP*AP*AP*AP*GP*CP*TP*TP*C)-3'), Middle transcription regulatory protein motA
Authors:Cuypers, M.G, Robertson, R.M, Knipling, L, Hinton, D.M, White, S.W.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:The phage T4 MotA transcription factor contains a novel DNA binding motif that specifically recognizes modified DNA.
Nucleic Acids Res., 46, 2018
7ZPG
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CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH LIGAND
Descriptor: Monoglyceride lipase, [(7R,9aR)-7-(4-chlorophenyl)-1,3,4,6,7,8,9,9a-octahydropyrido[1,2-a]pyrazin-2-yl]-(2-bromanyl-3-methoxy-phenyl)methanone
Authors:Kemble, A, Hornsperger, B, Ruf, I, Richter, H, Benz, J, Kuhn, B, Heer, D, Wittwer, M, Engelhardt, B, Grether, U, Collin, L, Leibrock, L.
Deposit date:2022-04-27
Release date:2022-09-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:A potent and selective inhibitor for the modulation of MAGL activity in the neurovasculature.
Plos One, 17, 2022
6FTU
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Structure of a Quadruplex forming sequence from D. discoideum
Descriptor: DNA (26-MER), POTASSIUM ION
Authors:Guedin, A, Linda, L, Armane, S, Lacroix, L, Mergny, J.L, Thore, S, Yatsunyk, L.A.
Deposit date:2018-02-23
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Quadruplexes in 'Dicty': crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.
Nucleic Acids Res., 46, 2018
8PU1
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BU of 8pu1 by Molmil
Structure of the toxin/antitoxin complex FaRel/ATfaRel2 with APCPP
Descriptor: ATfaRel2, CACODYLATE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Structure of the toxin/antitoxin complex FaRel/ATfaRel2 with APCPP
To Be Published
8PU4
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BU of 8pu4 by Molmil
FaRel2 bound to the ATP analogue, APCPP
Descriptor: MAGNESIUM ION, RelA/SpoT domain-containing protein, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:FaRel2 bound to the ATP analogue, APCPP
To Be Published
6NCA
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BU of 6nca by Molmil
HLA-A2 (A*02:01) bound to a peptide from the Epstein-Barr virus BRLF1 protein
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-2 alpha chain, ...
Authors:Stern, L.J, Selin, L.K, Song, I.Y.
Deposit date:2018-12-11
Release date:2019-10-23
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (3.300001 Å)
Cite:CDR3 alpha drives selection of the immunodominant Epstein Barr virus (EBV) BRLF1-specific CD8 T cell receptor repertoire in primary infection.
Plos Pathog., 15, 2019
6D99
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BU of 6d99 by Molmil
Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex with UDP-GalNAc (open, oxidized)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, ISOPROPYL ALCOHOL, SODIUM ION, ...
Authors:Wangkanont, K, Kiessling, L.L, Forest, K.T.
Deposit date:2018-04-28
Release date:2019-05-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Substrate recognition by FAD in UDP-galactopyranose mutase
To be published
6D9A
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Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex with UDP-GalNAc (open, reduced)
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, ISOPROPYL ALCOHOL, SODIUM ION, ...
Authors:Wangkanont, K, Kiessling, L.L, Forest, K.T.
Deposit date:2018-04-28
Release date:2019-05-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Substrate recognition by FAD in UDP-galactopyranose mutase
To be published
8AQF
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CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND LEI-515
Descriptor: 1-[(~{R})-[2-chloranyl-4-[(2~{S},3~{S})-4-(3-chlorophenyl)-2,3-dimethyl-piperazin-1-yl]carbonyl-phenyl]sulfinyl]-3,3-bis(fluoranyl)pentan-2-one, Monoglyceride lipase
Authors:Jiang, M, Huizenga, M, Wirt, J, Paloczi, J, Amedi, A, van der Berg, R, Benz, J, Collin, L, Deng, H, Driever, W, Florea, B, Grether, U, Janssen, A, Heitman, L, Lam, T.W, Mohr, F, Pavlovic, A, Ruf, I, Rutjes, H, Stevens, F, van der Vliet, D, van der Wel, T, Wittwer, M, Boeckel, C, Pacher, P, Hohmann, A, van der Stelt, M.
Deposit date:2022-08-12
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of a peripheral restricted, reversible monoacylglycerol lipase inhibitor that reduces liver injury and chemotherapy-induced neuropathy
To Be Published
8BQY
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An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-11-22
Release date:2023-02-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
8BV6
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BU of 8bv6 by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-12-01
Release date:2023-02-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
6HQU
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BU of 6hqu by Molmil
Humanised RadA mutant HumRadA22 in complex with a recombined BRC repeat 8-2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Breast cancer type 2 susceptibility, DNA repair and recombination protein RadA, ...
Authors:Pantelejevs, T, Lindenburg, L, Hyvonen, M, Hollfelder, F.
Deposit date:2018-09-25
Release date:2019-10-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Improved RAD51 binders through motif shuffling based on the modularity of BRC repeats.
Proc.Natl.Acad.Sci.USA, 118, 2021
6N99
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BU of 6n99 by Molmil
Xylose isomerase 2F1 variant from Streptomyces sp. F-1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, SULFATE ION, ...
Authors:Miyamoto, R.Y, Vieira, P.S, Murakami, M.T, Zanphorlin, L.M.
Deposit date:2018-12-01
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a novel xylose isomerase from Streptomyces sp. F-1 revealed the presence of unique features that differ from conventional classes.
Biochim Biophys Acta Gen Subj, 1864, 2020
8PU2
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BU of 8pu2 by Molmil
Structure of the antitoxin ATfaRel2
Descriptor: Antitoxin ATfaRel2, antidote of FaRel2, PHOSPHATE ION
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Structure of the antitoxin ATfaRel2
To Be Published
8PU3
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BU of 8pu3 by Molmil
Complex of the toxin/antitoxin FaRel2/ATfaRel2
Descriptor: ATfaRel2, FaRel2
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure of the toxin/antitoxin complex FaRel2/ATfaRel2
To Be Published
6H6S
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BU of 6h6s by Molmil
Sad phasing on nickel-substituted human carbonic anhydrase II
Descriptor: Carbonic anhydrase 2, NICKEL (II) ION
Authors:Calderone, V, Fragai, M, Silva, J.P, Luchinat, C, Ravera, E, Geraldes, C.F.G.C, Macedo, A.L, Cerofolini, L, Giuntini, S.
Deposit date:2018-07-30
Release date:2019-01-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Non-crystallographic symmetry in proteins: Jahn-Teller-like and Butterfly-like effects?
J. Biol. Inorg. Chem., 24, 2019
5WKA
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BU of 5wka by Molmil
Crystal structure of a GH1 beta-glucosidase retrieved from microbial metagenome of Poraque Amazon lake
Descriptor: Beta-glucosidase, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Morais, M.A.B, Toyama, D, Ramos, F.C, Zanphorlin, L.M, Tonoli, C.C.C, Miranda, F.P, Ruller, R, Henrique-Silva, F, Murakami, M.T.
Deposit date:2017-07-24
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A novel beta-glucosidase isolated from the microbial metagenome of Lake Poraque (Amazon, Brazil).
Biochim. Biophys. Acta, 1866, 2018
6MII
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BU of 6mii by Molmil
Crystal structure of minichromosome maintenance protein MCM/DNA complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Enemark, E.J, Meagher, M, Epling, L.B.
Deposit date:2018-09-19
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:DNA translocation mechanism of the MCM complex and implications for replication initiation.
Nat Commun, 10, 2019
6IEJ
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BU of 6iej by Molmil
The C2 domain of cytosolic phospholipase A2 alpha bound to phosphatidylcholine
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CALCIUM ION, Cytosolic phospholipase A2, ...
Authors:Hirano, Y, Gao, Y.G, Stephenson, D.J, Vu, N.T, Malinina, L, Chalfant, C.E, Patel, D.J, Brown, R.E.
Deposit date:2018-09-14
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Structural basis of phosphatidylcholine recognition by the C2-domain of cytosolic phospholipase A2alpha.
Elife, 8, 2019
5KEL
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BU of 5kel by Molmil
EBOV GP in complex with variable Fab domains of IgGs c2G4 and c13C6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ebola surface glycoprotein, ...
Authors:Pallesen, J, Murin, C.D, de Val, N, Cottrell, C.A, Hastie, K.M, Turner, H.L, Fusco, M.L, Flyak, A.I, Zeitlin, L, Crowe Jr, J.E, Andersen, K.G, Saphire, E.O, Ward, A.B.
Deposit date:2016-06-09
Release date:2016-09-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structures of Ebola virus GP and sGP in complex with therapeutic antibodies.
Nat Microbiol, 1, 2016
5KEN
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BU of 5ken by Molmil
EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ebola surface glycoprotein, ...
Authors:Pallesen, J, Murin, C.D, de Val, N, Cottrell, C.A, Hastie, K.M, Turner, H.L, Fusco, M.L, Flyak, A.I, Zeitlin, L, Crowe Jr, J.E, Andersen, K.G, Saphire, E.O, Ward, A.B.
Deposit date:2016-06-09
Release date:2016-09-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structures of Ebola virus GP and sGP in complex with therapeutic antibodies.
Nat Microbiol, 1, 2016
7PRM
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BU of 7prm by Molmil
CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND 13
Descriptor: (4~{R})-1-[4-(4-fluorophenyl)phenyl]-4-[4-(furan-2-ylcarbonyl)piperazin-1-yl]pyrrolidin-2-one, 1,2-ETHANEDIOL, Monoglyceride lipase
Authors:Grether, U, Gobbi, L, Kuhn, B, Collin, L, Leibrock, L, Heer, D, Wittwer, M, Benz, J.
Deposit date:2021-09-22
Release date:2022-02-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Development of High Brain-Penetrant and Reversible Monoacylglycerol Lipase PET Tracers for Neuroimaging.
J.Med.Chem., 65, 2022
8E1X
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BU of 8e1x by Molmil
FGFR2 kinase domain in complex with a Pyrazolo[1,5-a]pyrimidine analog (Compound 29)
Descriptor: (5M)-N-methyl-5-{(6M,8S)-5-{[(3S)-oxolan-3-yl]amino}-6-[1-(propan-2-yl)-1H-pyrazol-3-yl]pyrazolo[1,5-a]pyrimidin-3-yl}pyridine-3-carboxamide, Fibroblast growth factor receptor 2
Authors:Lei, H.-T, Epling, L.B, Deller, M.C.
Deposit date:2022-08-11
Release date:2022-11-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Discovery of Potent and Selective Inhibitors of Wild-Type and Gatekeeper Mutant Fibroblast Growth Factor Receptor (FGFR) 2/3.
J.Med.Chem., 65, 2022
1BY5
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BU of 1by5 by Molmil
FHUA FROM E. COLI, WITH ITS LIGAND FERRICHROME
Descriptor: FE (III) ION, FERRIC HYDROXAMATE UPTAKE PROTEIN, FERRICHROME, ...
Authors:Locher, K.P, Rees, B, Koebnik, R, Mitschler, A, Moulinier, L, Rosenbusch, J.P, Moras, D.
Deposit date:1998-10-23
Release date:1999-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Transmembrane signaling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes.
Cell(Cambridge,Mass.), 95, 1998
1AZN
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BU of 1azn by Molmil
CRYSTAL STRUCTURE OF THE AZURIN MUTANT PHE114ALA FROM PSEUDOMONAS AERUGINOSA AT 2.6 ANGSTROMS RESOLUTION
Descriptor: AZURIN, COPPER (II) ION
Authors:Tsai, L.-C, Sjolin, L, Langer, V, Pascher, T, Nar, H.
Deposit date:1994-05-27
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the azurin mutant Phe114Ala from Pseudomonas aeruginosa at 2.6 A resolution.
Acta Crystallogr.,Sect.D, 51, 1995

224004

數據於2024-08-21公開中

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