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PDB: 352 results

6X3T
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Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus propofol
Descriptor: 2,6-BIS(1-METHYLETHYL)PHENOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6X3W
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BU of 6x3w by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus phenobarbital
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-ethyl-5-phenylpyrimidine-2,4,6(1H,3H,5H)-trione, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6X3V
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Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus etomidate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Etomidate, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6X3U
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BU of 6x3u by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus flumazenil
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6X40
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BU of 6x40 by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus picrotoxin
Descriptor: (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6X3X
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BU of 6x3x by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus diazepam
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 7-CHLORO-1-METHYL-5-PHENYL-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE, ...
Authors:Kim, J.J, Gharpure, A, Teng, J, Zhuang, Y, Howard, R.J, Zhu, S, Noviello, C.M, Walsh, R.M, Lindahl, E, Hibbs, R.E.
Deposit date:2020-05-21
Release date:2020-09-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Shared structural mechanisms of general anaesthetics and benzodiazepines.
Nature, 585, 2020
6DZD
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BU of 6dzd by Molmil
Crystal structure of Bacillus licheniformis hypothetical protein YfiH
Descriptor: CHLORIDE ION, POTASSIUM ION, SODIUM ION, ...
Authors:Almeida, L.R, Grejo, M.P, Mulinari, E.J, Santos, J.C, Camargo, S, Bernardes, A, Muniz, J.R.C.
Deposit date:2018-07-03
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structure of Bacillus licheniformis hypothetical protein YfiH
To Be Published
8ATG
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BU of 8atg by Molmil
Pentameric ligand-gated ion channel GLIC with bound lipids
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Proton-gated ion channel
Authors:Bergh, C, Rovsnik, U, Howard, R.J, Lindahl, E.
Deposit date:2022-08-23
Release date:2023-09-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Discovery of lipid binding sites in a ligand-gated ion channel by integrating simulations and cryo-EM.
Elife, 12, 2024
8OQ6
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BU of 8oq6 by Molmil
CryoEM structure of human rho1 GABAA receptor apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQ7
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BU of 8oq7 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with inhibitor TPMPA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQA
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BU of 8oqa by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with GABA and picrotoxin
Descriptor: (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OQ8
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BU of 8oq8 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with pore blocker picrotoxin
Descriptor: (1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, DECANE, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-11
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
8OP9
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BU of 8op9 by Molmil
CryoEM structure of human rho1 GABAA receptor in complex with GABA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Chen, F, Victor, T, John, C, Rebecca, J.H, Lindahl, E.
Deposit date:2023-04-06
Release date:2023-08-30
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structure and dynamics of differential ligand binding in the human rho-type GABA A receptor.
Neuron, 111, 2023
5YVS
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BU of 5yvs by Molmil
Crystal Structure of the archaeal halo-thermophilic Red Sea brine pool alcohol dehydrogenase ADH/D1 bound to NADP
Descriptor: MANGANESE (II) ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alcohol dehydrogenase
Authors:Groetzinger, S.W, Strillinger, E, Frank, A, Eppinger, J, Groll, M, Arold, S.T.
Deposit date:2017-11-27
Release date:2017-12-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.345 Å)
Cite:Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes
ACS Chem. Biol., 13, 2018
5YVR
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BU of 5yvr by Molmil
Crystal Structure of the H277A mutant of ADH/D1, an archaeal halo-thermophilic Red Sea brine pool alcohol dehydrogenase
Descriptor: MANGANESE (II) ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alcohol dehydrogenase
Authors:Groetzinger, S.W, Strillinger, E, Frank, A, Eppinger, J, Groll, M, Arold, S.T.
Deposit date:2017-11-27
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.896 Å)
Cite:Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes
ACS Chem. Biol., 13, 2018
5YVM
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BU of 5yvm by Molmil
Crystal Structure of the archaeal halo-thermophilic Red Sea brine pool alcohol dehydrogenase ADH/D1 bound to NZQ
Descriptor: 5,6-DIHYDROXY-NADP, MANGANESE (II) ION, alcohol dehydrogenase
Authors:Groetzinger, S.W, Strillinger, E, Frank, A, Eppinger, J, Groll, M, Arold, S.T.
Deposit date:2017-11-26
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes
ACS Chem. Biol., 13, 2018
6HVK
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BU of 6hvk by Molmil
Pepducin UT-Pep2 a biased allosteric agonist of Urotensin-II receptor
Descriptor: Urotensin-2 receptor
Authors:Carotenuto, A, Hoang, T.A, Nassour, H, Martin, R.D, Billard, E, Myriam, L, Novellino, E, Tanny, J.C, Fournier, A, Hebert, T.E, Chatenet, D.
Deposit date:2018-10-11
Release date:2019-10-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Lipidated peptides derived from intracellular loops 2 and 3 of the urotensin II receptor act as biased allosteric ligands.
J.Biol.Chem., 297, 2021
6ERI
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BU of 6eri by Molmil
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10 alpha, ...
Authors:Perez Borema, A, Aibara, S, Paul, B, Tobiasson, V, Kimanius, D, Forsberg, B.O, Wallden, K, Lindahl, E, Amunts, A.
Deposit date:2017-10-18
Release date:2018-04-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Nat Plants, 4, 2018
6HUE
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BU of 6hue by Molmil
ParkinS65N
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
Authors:McWilliams, T.G, Barini, E, Pohjolan-Pirhonen, R, Brooks, S.P, Singh, F, Burel, S, Balk, K, Kumar, A, Montava-Garriga, L, Prescott, A.R, Hassoun, S.M, Mouton-Liger, F, Ball, G, Hills, R, Knebel, A, Ulusoy, A, Di Monte, D.A, Tamjar, J, Antico, O, Fears, K, Smith, L, Brambilla, R, Palin, E, Valori, M, Eerola-Rautio, J, Tienari, P, Corti, O, Dunnett, S.B, Ganley, I.G, Suomalainen, A, Muqit, M.M.K.
Deposit date:2018-10-07
Release date:2018-10-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Phosphorylation of Parkin at serine 65 is essential for its activation in vivo .
Open Biology, 8, 2018
5LFF
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BU of 5lff by Molmil
NMR structure of peptide 2 targeting CXCR4
Descriptor: ARG-ALA-CYS-ARG-PHE-PHE-CYS
Authors:Di Maro, S, Trotta, A.M, Brancaccio, D, Di Leva, F.S, La Pietra, V, Ierano, C, Napolitano, M, Portella, L, D'Alterio, C, Siciliano, R.A, Sementa, D, Tomassi, S, Carotenuto, A, Novellino, E, Scala, S, Marinelli, L.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Exploring the N-Terminal Region of C-X-C Motif Chemokine 12 (CXCL12): Identification of Plasma-Stable Cyclic Peptides As Novel, Potent C-X-C Chemokine Receptor Type 4 (CXCR4) Antagonists.
J.Med.Chem., 59, 2016
7M6T
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BU of 7m6t by Molmil
Crystal structure of SOCS2/ElonginB/ElonginC bound to a non-canonical peptide that enhances phospho-peptide binding
Descriptor: Elongin-B, Elongin-C, Non-canonical peptide F3, ...
Authors:Kershaw, N.J, Li, K, Linossi, E.M, Nicholson, S.E.
Deposit date:2021-03-26
Release date:2021-10-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Discovery of an exosite on the SOCS2-SH2 domain that enhances SH2 binding to phosphorylated ligands.
Nat Commun, 12, 2021
8BTK
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BU of 8btk by Molmil
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Jaskolowski, M, Jomaa, A, Gamerdinger, M, Shrestha, S, Leibundgut, M, Deuerling, E, Ban, N.
Deposit date:2022-11-29
Release date:2023-05-24
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Molecular basis of the TRAP complex function in ER protein biogenesis.
Nat.Struct.Mol.Biol., 30, 2023
4YCB
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BU of 4ycb by Molmil
Structure of a single tryptophan mutant of Acetobacter aceti PurE
Descriptor: 1,2-ETHANEDIOL, 2,5,8,11-TETRAOXATRIDECANE, ACETATE ION, ...
Authors:Kappock, T.J, Sullivan, K.L, Mullins, E.A.
Deposit date:2015-02-19
Release date:2016-02-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of a single tryptophan mutant of Acetobacter aceti PurE
To Be Published
2YFB
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BU of 2yfb by Molmil
X-ray structure of McpS ligand binding domain in complex with succinate
Descriptor: ACETATE ION, METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER, SUCCINIC ACID, ...
Authors:Gavira, J.A, Pineda-Molina, E, Krell, T.
Deposit date:2011-04-05
Release date:2012-04-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
Proc.Natl.Acad.Sci.USA, 109, 2012
5D2C
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BU of 5d2c by Molmil
Reaction of phosphorylated CheY with imidazole 1 of 3
Descriptor: BERYLLIUM TRIFLUORIDE ION, Chemotaxis protein CheY, GLYCEROL, ...
Authors:Page, S, Silversmith, R.E, Bourret, R.B, Collins, E.J.
Deposit date:2015-08-05
Release date:2016-03-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Imidazole as a Small Molecule Analogue in Two-Component Signal Transduction.
Biochemistry, 54, 2015

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