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PDB: 257 results

4UC3
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Translocator protein 18 kDa (TSPO) from Rhodobacter sphaeroides wild type
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2-(hexadecanoyloxy)-3-hydroxypropyl (9Z)-octadec-9-enoate, TRANSLOCATOR PROTEIN TSPO
Authors:Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
Deposit date:2014-08-13
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism.
Science, 347, 2015
6MDX
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Mechanism of protease dependent DPC repair
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, DNA (5'-D(P*CP*C)-3'), ...
Authors:Li, F, Raczynska, J, Chen, Z, Yu, H.
Deposit date:2018-09-05
Release date:2019-04-10
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan.
Cell Rep, 26, 2019
6OCG
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Crystal structure of VASH1-SVBP complex bound with EpoY
Descriptor: CHLORIDE ION, GLYCEROL, N-[(3R)-4-ethoxy-3-hydroxy-4-oxobutanoyl]-L-tyrosine, ...
Authors:Li, F, Luo, X, Yu, H.
Deposit date:2019-03-23
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Structural basis of tubulin detyrosination by vasohibins.
Nat.Struct.Mol.Biol., 26, 2019
6OCF
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BU of 6ocf by Molmil
The crystal structure of VASH1-SVBP complex
Descriptor: CHLORIDE ION, GLYCEROL, Small vasohibin-binding protein, ...
Authors:Li, F, Luo, X, Yu, H.
Deposit date:2019-03-23
Release date:2019-06-26
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structural basis of tubulin detyrosination by vasohibins.
Nat.Struct.Mol.Biol., 26, 2019
7SFS
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BU of 7sfs by Molmil
In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution
Descriptor: Gene 3 protein, Gene 7 protein
Authors:Li, F, Cingolani, G, Hou, C.
Deposit date:2021-10-04
Release date:2022-11-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
7SG7
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BU of 7sg7 by Molmil
In situ cryo-EM structure of bacteriophage Sf6 gp8:gp14N complex at 2.8 A resolution
Descriptor: Gene 14 protein, Gene 8 protein
Authors:Li, F, Cingolani, G, Hou, C.
Deposit date:2021-10-05
Release date:2022-11-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
7SP4
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BU of 7sp4 by Molmil
In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 2 at 3.71A resolution
Descriptor: Gene 3 protein, Gene 5 protein, Gene 7 protein
Authors:Li, F, Cingolani, G, Hou, C, Yang, R.
Deposit date:2021-11-02
Release date:2022-11-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
7SPU
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BU of 7spu by Molmil
In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution
Descriptor: Gene 3 protein, Gene 5 protein, Gene 7 protein
Authors:Li, F, Cingolani, G, Hou, C, Yang, R.
Deposit date:2021-11-03
Release date:2022-11-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:High-resolution cryo-EM structure of the Shigella virus Sf6 genome delivery tail machine.
Sci Adv, 8, 2022
7T3N
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BU of 7t3n by Molmil
R184Q/E191Q mutant of rat vesicular glutamate transporter 2 (VGLUT2)
Descriptor: (1S,3R)-1-AMINOCYCLOPENTANE-1,3-DICARBOXYLIC ACID, (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Vesicular glutamate transporter 2
Authors:Li, F, Stroud, R.M, Edwards, R.H.
Deposit date:2021-12-08
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Substrate Recognition, Directional Flux, and Allostery in a Synaptic Vesicle Glutamate Transporter
To Be Published
7T3O
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BU of 7t3o by Molmil
Rat vesicular glutamate transporter 2 (VGLUT2) in low Cl condition
Descriptor: Vesicular glutamate transporter 2
Authors:Li, F, Stroud, R.M, Edwards, R.H.
Deposit date:2021-12-08
Release date:2022-12-14
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Substrate Recognition, Directional Flux, and Allostery in a Synaptic Vesicle Glutamate Transporter
To Be Published
8SBE
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BU of 8sbe by Molmil
Structure of the rat vesicular glutamate transporter 2 determined by single-particle Cryo-EM
Descriptor: Vesicular glutamate transporter 2
Authors:Li, F, Finer-Moore, J, Eriksen, J, Cheng, Y, Edwards, R, Stroud, R.
Deposit date:2023-04-03
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Ion transport and regulation in a synaptic vesicle glutamate transporter.
Science, 368, 2020
4XYW
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BU of 4xyw by Molmil
Glycosyltransferases WbnH
Descriptor: O-antigen biosynthesis glycosyltransferase WbnH, SULFATE ION
Authors:Li, F.
Deposit date:2015-02-03
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Glycosyltransferases WbnH
To Be Published
4Y3I
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PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, low dose
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Li, F, Burgie, E.S, Yu, T, Heroux, A, Schatz, G.C, Vierstra, R.D, Orville, A.M.
Deposit date:2015-02-10
Release date:2015-05-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4Y5F
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BU of 4y5f by Molmil
PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, high dose
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Li, F, Burgie, E.S, Yu, T, Heroux, A, Schatz, G.C, Vierstra, R.D, Orville, A.M.
Deposit date:2015-02-11
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
1MIV
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BU of 1miv by Molmil
Crystal structure of Bacillus stearothermophilus CCA-adding enzyme
Descriptor: MAGNESIUM ION, tRNA CCA-adding enzyme
Authors:Li, F, Xiong, Y, Wang, J, Cho, H.D, Weiner, A.M, Steitz, T.A.
Deposit date:2002-08-23
Release date:2002-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP
Cell(Cambridge,Mass.), 111, 2002
1MIW
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BU of 1miw by Molmil
Crystal structure of Bacillus stearothermophilus CCA-adding enzyme in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA CCA-adding enzyme
Authors:Li, F, Xiong, Y, Wang, J, Cho, H.D, Weiner, A.M, Steitz, T.A.
Deposit date:2002-08-23
Release date:2002-12-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP
Cell(Cambridge,Mass.), 111, 2002
1MIY
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BU of 1miy by Molmil
Crystal structure of Bacillus stearothermophilus CCA-adding enzyme in complex with CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA CCA-adding enzyme
Authors:Li, F, Xiong, Y, Wang, J, Cho, H.D, Weiner, A.M, Steitz, T.A.
Deposit date:2002-08-23
Release date:2002-12-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP
Cell(Cambridge,Mass.), 111, 2002
3D0H
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BU of 3d0h by Molmil
Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus civet strain complexed with human-civet chimeric receptor ACE2
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, F.
Deposit date:2008-05-01
Release date:2008-07-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural analysis of major species barriers between humans and palm civets for severe acute respiratory syndrome coronavirus infections
J.Virol., 82, 2008
3D0I
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BU of 3d0i by Molmil
Crystal structure of spike protein receptor-binding domain from the 2005-2006 SARS coronavirus civet strain complexed with human-civet chimeric receptor ACE2
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, F.
Deposit date:2008-05-01
Release date:2008-07-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of major species barriers between humans and palm civets for severe acute respiratory syndrome coronavirus infections
J.Virol., 82, 2008
5DUO
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BU of 5duo by Molmil
Crystal structure of native translocator protein 18kDa (TSPO) from Rhodobacter sphaeroides (A139T Mutant) in C2 space group
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, FORMIC ACID, PROTOPORPHYRIN IX, ...
Authors:Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
Deposit date:2015-09-20
Release date:2015-11-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Response to Comment on "Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism".
Science, 350, 2015
5EOA
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BU of 5eoa by Molmil
Crystal structure of OPTN E50K mutant and TBK1 complex
Descriptor: Optineurin, Serine/threonine-protein kinase TBK1
Authors:Li, F, Xie, X, Liu, J, Pan, L.
Deposit date:2015-11-10
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins.
Nat Commun, 7, 2016
3D0G
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BU of 3d0g by Molmil
Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus human strain complexed with human-civet chimeric receptor ACE2
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, F.
Deposit date:2008-05-01
Release date:2008-07-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis of major species barriers between humans and palm civets for severe acute respiratory syndrome coronavirus infections
J.Virol., 82, 2008
5EOF
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BU of 5eof by Molmil
Crystal structure of OPTN NTD and TBK1 CTD complex
Descriptor: Optineurin, Serine/threonine-protein kinase TBK1
Authors:Li, F, Xie, X, Liu, J, Pan, L.
Deposit date:2015-11-10
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins.
Nat Commun, 7, 2016
5EP6
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BU of 5ep6 by Molmil
The crystal structure of NAP1 in complex with TBK1
Descriptor: 5-azacytidine-induced protein 2, GLYCEROL, Serine/threonine-protein kinase TBK1
Authors:Li, F, Xie, X, Liu, J, Pan, L.
Deposit date:2015-11-11
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins.
Nat Commun, 7, 2016
8VKJ
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BU of 8vkj by Molmil
Cryo-EM structure of human HGSNAT bound with Acetyl-CoA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYL COENZYME *A, ...
Authors:Li, F, Zhao, B.
Deposit date:2024-01-09
Release date:2024-06-26
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Structural and mechanistic insights into a lysosomal membrane enzyme HGSNAT involved in Sanfilippo syndrome.
Nat Commun, 15, 2024

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