Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 228 results

6LRG
DownloadVisualize
BU of 6lrg by Molmil
Crystal Structure of the Ternary Complex of AgrE with Ornithine and NAD+
Descriptor: Alr4995 protein, L-ornithine, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.41218114 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
6UH7
DownloadVisualize
BU of 6uh7 by Molmil
EV-A71 strain 11316 complexed with MADAL compound 30
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
6UH6
DownloadVisualize
BU of 6uh6 by Molmil
EV-A71 strain 11316 complexed with MADAL compound 22
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
6UH1
DownloadVisualize
BU of 6uh1 by Molmil
Structure of the EVA71 strain 11316 capsid
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
3J3Z
DownloadVisualize
BU of 3j3z by Molmil
Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
Descriptor: MA28-7 neutralizing antibody heavy chain, MA28-7 neutralizing antibody light chain
Authors:Lee, H, Cifuente, J.O, Ashley, R.E, Conway, J.F, Makhov, A.M, Tano, Y, Shimizu, H, Nishimura, Y, Hafenstein, S.
Deposit date:2013-05-21
Release date:2013-08-28
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (23.4 Å)
Cite:A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
6OAS
DownloadVisualize
BU of 6oas by Molmil
Structure of canine parvovirus in complex with transferrin receptor type-1
Descriptor: Capsid protein VP1
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-03-18
Release date:2019-09-18
Last modified:2019-12-04
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Transferrin receptor binds virus capsid with dynamic motion.
Proc.Natl.Acad.Sci.USA, 116, 2019
5XQH
DownloadVisualize
BU of 5xqh by Molmil
Crystal structure of truncated human Rogdi
Descriptor: Protein rogdi homolog
Authors:Lee, H, Lee, C.
Deposit date:2017-06-07
Release date:2017-07-12
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tonz Syndrome
Sci Rep, 7, 2017
5XQI
DownloadVisualize
BU of 5xqi by Molmil
Crystal structure of full-length human Rogdi
Descriptor: Protein rogdi homolog
Authors:Lee, H, Lee, C.
Deposit date:2017-06-07
Release date:2017-07-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tonz Syndrome
Sci Rep, 7, 2017
6LRH
DownloadVisualize
BU of 6lrh by Molmil
Crystal Structure of the Binary Complex of AgrE C264A mutant with L-arginine
Descriptor: ARGININE, Alr4995 protein
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.70510483 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
6LRF
DownloadVisualize
BU of 6lrf by Molmil
Crystal structure of unliganded AgrE
Descriptor: Alr4995 protein
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.05466056 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
7XW3
DownloadVisualize
BU of 7xw3 by Molmil
Cryo-EM structure of an apo-form of human DICER
Descriptor: Endoribonuclease Dicer
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
7XW2
DownloadVisualize
BU of 7xw2 by Molmil
Cryo-EM structure of human DICER-pre-miRNA in a dicing state
Descriptor: CALCIUM ION, Endoribonuclease Dicer, RNA (73-MER)
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
5Y2Y
DownloadVisualize
BU of 5y2y by Molmil
Crystal structure of HaloTag (M175C) complexed with dansyl-PEG2-HaloTag ligand
Descriptor: 5-(dimethylamino)-~{N}-[2-(2-hexoxyethoxy)ethyl]naphthalene-1-sulfonamide, CHLORIDE ION, Haloalkane dehalogenase
Authors:Lee, H, Kang, M, Rhee, H, Lee, C.
Deposit date:2017-07-27
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure-guided synthesis of a protein-based fluorescent sensor for alkyl halides
Chem. Commun. (Camb.), 53, 2017
5Y2X
DownloadVisualize
BU of 5y2x by Molmil
Crystal structure of apo-HaloTag (M175C)
Descriptor: CHLORIDE ION, Haloalkane dehalogenase
Authors:Lee, H, Kang, M, Rhee, H, Lee, C.
Deposit date:2017-07-27
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structure-guided synthesis of a protein-based fluorescent sensor for alkyl halides
Chem. Commun. (Camb.), 53, 2017
3JD7
DownloadVisualize
BU of 3jd7 by Molmil
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Lee, H, Shingler, K.L, Organtini, L.J, Ashley, R.E, Makhov, A.M, Conway, J.F, Hafenstein, S.
Deposit date:2016-04-29
Release date:2016-09-14
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs.
Sci Adv, 2, 2016
3J7E
DownloadVisualize
BU of 3j7e by Molmil
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Descriptor: H16.V5 Fab heavy chain, H16.V5 Fab light chain
Authors:Lee, H, Brendle, S.A, Bywaters, S.M, Christensen, N.D, Hafenstein, S.
Deposit date:2014-06-23
Release date:2014-11-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:A cryo-electron microscopy study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment.
J.Virol., 89, 2015
3J7G
DownloadVisualize
BU of 3j7g by Molmil
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Descriptor: L1
Authors:Lee, H, Hafenstein, S.
Deposit date:2014-06-24
Release date:2014-11-26
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:A cryo-electron microscopy study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment.
J.Virol., 89, 2015
5JWT
DownloadVisualize
BU of 5jwt by Molmil
T4 Lysozyme L99A/M102Q with Benzene Bound
Descriptor: BENZENE, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
5JWU
DownloadVisualize
BU of 5jwu by Molmil
T4 Lysozyme L99A/M102Q with 1,2-Dihydro-1,2-azaborine Bound
Descriptor: 1,2-dihydro-1,2-azaborinine, CHLORIDE ION, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
5JWS
DownloadVisualize
BU of 5jws by Molmil
T4 Lysozyme L99A with 1-Hydro-2-ethyl-1,2-azaborine Bound
Descriptor: 2-ethyl-1,2-dihydro-1,2-azaborinine, CHLORIDE ION, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
5JWW
DownloadVisualize
BU of 5jww by Molmil
T4 Lysozyme L99A/M102Q with 1-Hydro-2-ethyl-1,2-azaborine Bound
Descriptor: 2-ethyl-1,2-dihydro-1,2-azaborinine, CHLORIDE ION, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
5JWV
DownloadVisualize
BU of 5jwv by Molmil
T4 Lysozyme L99A/M102Q with Ethylbenzene Bound
Descriptor: Endolysin, PHENYLETHANE
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
2LRQ
DownloadVisualize
BU of 2lrq by Molmil
Chemical Shift Assignment and Solution Structure of Fr822A from Drosophila melanogaster. Northeast Structural Genomics Consortium Target Fr822A
Descriptor: NuA4 complex subunit EAF3 homolog
Authors:Lee, H, Lee, D, Kohan, E, Janjua, H, Xiao, R, Acton, T, Everett, J.K, Montelione, G, Prestegard, J.H, Northeast Structural Genomics Consortium (NESG), Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)
Deposit date:2012-04-11
Release date:2012-07-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure of Fr822A from Drosophila melanogaster.
To be Published
7B8W
DownloadVisualize
BU of 7b8w by Molmil
Structure of LIMK1 Kinase domain with allosteric inhibitor TH-470
Descriptor: 1,2-ETHANEDIOL, 2-(2-methylpropanoylamino)-~{N}-[2-[(phenylmethyl)-[4-(phenylsulfamoyl)phenyl]carbonyl-amino]ethyl]-1,3-thiazole-5-carboxamide, LIM domain kinase 1
Authors:Lee, H, Yosaatmadja, Y, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Elkins, J.M.
Deposit date:2020-12-13
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of LIMK1 Kinase domain with allosteric inhibitor TH-470
To Be Published
7CBC
DownloadVisualize
BU of 7cbc by Molmil
Crystal structure of a de novo designed switch protein caging a hemagglutinin binder
Descriptor: De novo designed switch protein caging a hemagglutinin binder (sCageHA267_1S), ETHANOL
Authors:Lee, H, Oh, B.-H, Baker, D.
Deposit date:2020-06-11
Release date:2020-12-23
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:De novo design of modular and tunable protein biosensors.
Nature, 591, 2021

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon