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PDB: 1114 results

7WPC
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BU of 7wpc by Molmil
The second RBD of SARS-CoV-2 Omicron Variant in complexed with RBD-ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPD
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BU of 7wpd by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with one JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPF
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BU of 7wpf by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with three JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPE
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BU of 7wpe by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with two JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-23
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WRV
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BU of 7wrv by Molmil
The interface of JMB2002 Fab binds to SARS-CoV-2 Omicron Variant S
Descriptor: JMB2002 Fab heavy chain, JMB2002 Fab light chain, Spike glycoprotein
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-27
Release date:2022-03-23
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
6JC9
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BU of 6jc9 by Molmil
Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with amino donor L-Gln
Descriptor: ACETIC ACID, CrmG, GLUTAMINE, ...
Authors:Xu, J, Liu, J.
Deposit date:2019-01-28
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural studies reveal flexible roof of active site responsible for omega-transaminase CrmG overcoming by-product inhibition.
Commun Biol, 3, 2020
6JAK
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BU of 6jak by Molmil
OtsA apo structure
Descriptor: Trehalose-6-phosphate synthase
Authors:Wang, S, Zhao, Y, Wang, D, Liu, J.
Deposit date:2019-01-24
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structures of Magnaporthe oryzae trehalose-6-phosphate synthase (MoTps1) suggest a model for catalytic process of Tps1.
Biochem.J., 476, 2019
6JCA
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BU of 6jca by Molmil
Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in I222 space group
Descriptor: CHLORIDE ION, CrmG, GLYCEROL, ...
Authors:Xu, J, Liu, J.
Deposit date:2019-01-28
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural studies reveal flexible roof of active site responsible for omega-transaminase CrmG overcoming by-product inhibition.
Commun Biol, 3, 2020
8J0G
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BU of 8j0g by Molmil
GK monomer complexes with glutamate and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Delta-1-pyrroline-5-carboxylate synthase B, GAMMA-L-GLUTAMIC ACID, ...
Authors:Zhang, T, Guo, C.J, Liu, J.L.
Deposit date:2023-04-10
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:GK monomer complexes with glutamate and ATP
To Be Published
8J27
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BU of 8j27 by Molmil
GK monomer complexes with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Delta-1-pyrroline-5-carboxylate synthase B
Authors:Zhang, T, Guo, C.J, Liu, J.L.
Deposit date:2023-04-14
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:GK monomer complexes with ADP
To Be Published
8J28
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BU of 8j28 by Molmil
GK monomer complexes with G5P and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Delta-1-pyrroline-5-carboxylate synthase B, GAMMA-GLUTAMYL PHOSPHATE
Authors:Zhang, T, Guo, C.J, Liu, J.L.
Deposit date:2023-04-14
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:GK monomer complexes with G5P and ADP
To Be Published
6LSV
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BU of 6lsv by Molmil
Crystal structure of JOX2 in complex with 2OG, Fe, and JA
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, Probable 2-oxoglutarate-dependent dioxygenase At5g05600, ...
Authors:Zhang, X, Wang, D, Liu, J.
Deposit date:2020-01-20
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.
Mol Plant, 14, 2021
6JBI
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BU of 6jbi by Molmil
Structure of Tps1 apo structure
Descriptor: Trehalose-6-phosphate synthase
Authors:Wang, S, Zhao, Y, Yi, L, Wang, D, Liu, J.
Deposit date:2019-01-25
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of Magnaporthe oryzae trehalose-6-phosphate synthase (MoTps1) suggest a model for catalytic process of Tps1.
Biochem.J., 476, 2019
6JC8
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BU of 6jc8 by Molmil
Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with amino donor L-Glu
Descriptor: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid, CrmG, GLYCEROL
Authors:Xu, J, Liu, J.
Deposit date:2019-01-28
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural studies reveal flexible roof of active site responsible for omega-transaminase CrmG overcoming by-product inhibition.
Commun Biol, 3, 2020
5Y45
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BU of 5y45 by Molmil
Crystal structure of a collagen-like peptide with interruption sequence
Descriptor: collagen-like peptide
Authors:Xu, T, Liu, J.
Deposit date:2017-08-01
Release date:2018-05-30
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Unique Conformation in a Natural Interruption Sequence of Type XIX Collagen Revealed by Its High-Resolution Crystal Structure.
Biochemistry, 57, 2018
2JN9
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BU of 2jn9 by Molmil
NMR solution structure of YkvR protein from Bacillus subtilis: NESG target SR358
Descriptor: YkvR protein
Authors:Gurla, S.V.T, Aramini, J.M, Chi Ho, K, Cunningham, K, Ma, L.-C, Xiao, R, Baran, M.C, Acton, T.B, Liu, J, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-12-29
Release date:2007-05-01
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:NMR solution structure of YkvR protein from Bacillus subtilis: NESG target SR358
To be Published
2JRF
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BU of 2jrf by Molmil
Solution NMR structure of Tubulin polymerization-promoting protein family member 3 from Homo sapiens. Northeast Structural Genomics target HR387.
Descriptor: Tubulin polymerization-promoting protein family member 3
Authors:Aramini, J.M, Rossi, P, Shastry, R, Nwosu, C, Cunningham, K, Xiao, R, Liu, J, Baran, M.C, Rajan, P.K, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-06-25
Release date:2007-07-17
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Solution NMR structure of Tubulin polymerization-promoting protein family member 3 from Homo sapiens.
To be Published
6JBW
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BU of 6jbw by Molmil
Structure of Tps1/UDP complex
Descriptor: Trehalose-6-phosphate synthase, URIDINE-5'-DIPHOSPHATE
Authors:Wang, S, Zhao, Y, Wang, D, Liu, J.
Deposit date:2019-01-26
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structures of Magnaporthe oryzae trehalose-6-phosphate synthase (MoTps1) suggest a model for catalytic process of Tps1.
Biochem.J., 476, 2019
2G31
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BU of 2g31 by Molmil
Human Nogo-A functional domain: nogo60
Descriptor: Reticulon-4
Authors:Li, M.F, Liu, J.X, Song, J.X.
Deposit date:2006-02-17
Release date:2006-08-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Nogo goes in the pure water: solution structure of Nogo-60 and design of the structured and buffer-soluble Nogo-54 for enhancing CNS regeneration
Protein Sci., 15, 2006
5Z7A
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BU of 5z7a by Molmil
Crystal structure of NDP52 SKICH region
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ...
Authors:Pan, L.F, Fu, T, Liu, J.P, Xie, X.Q.
Deposit date:2018-01-27
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2K5Q
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BU of 2k5q by Molmil
NMR Solution structure of membrane associated protein from Bacillus cereus: Northeast Structural Genomics Consortium Target: BcR97A
Descriptor: Hypothetical Membrane Associated Protein BcR97A
Authors:Swapna, G, Wang, D, Owens, L, Xiao, R, Liu, J, Baran, M.C, Everett, J, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-30
Release date:2008-08-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR solution Structure of Membrane associated protein from Bacillus cereus: Northeast Structural Genomics Consortium Target: BcR97A
To be Published
5ZMD
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BU of 5zmd by Molmil
Crystal structure of FTO in complex with m6dA modified ssDNA
Descriptor: Alpha-ketoglutarate-dependent dioxygenase FTO, DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3'), MANGANESE (II) ION, ...
Authors:Zhang, X, Wei, L.H, Luo, J, Xiao, Y, Liu, J, Zhang, W, Zhang, L, Jia, G.F.
Deposit date:2018-04-02
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural insights into FTO's catalytic mechanism for the demethylation of multiple RNA substrates.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
8J0E
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BU of 8j0e by Molmil
GK monomer complexes with catalytic intermediate
Descriptor: (2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid, Delta-1-pyrroline-5-carboxylate synthase B, MAGNESIUM ION
Authors:Zhang, T, Guo, C.J, Liu, J.L.
Deposit date:2023-04-10
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:GK monomer complexes with catalytic intermediate
To Be Published
5WZS
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BU of 5wzs by Molmil
Crystal structure of human secreted phospholipase A2 group IIE with Compound 8
Descriptor: 2-[2-methyl-1-(naphthalen-1-ylmethyl)-3-oxamoyl-indol-4-yl]oxyethanoic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Hou, S, Xu, J, Xu, T, Liu, J.
Deposit date:2017-01-18
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for functional selectivity and ligand recognition revealed by crystal structures of human secreted phospholipase A2 group IIE
Sci Rep, 7, 2017
5WZV
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BU of 5wzv by Molmil
Crystal structure of human secreted phospholipase A2 group IIE with Me-indoxam
Descriptor: 2-[2-methyl-3-oxamoyl-1-[(2-phenylphenyl)methyl]indol-4-yl]oxyethanoic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Hou, S, Xu, J, Xu, T, Liu, J.
Deposit date:2017-01-18
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for functional selectivity and ligand recognition revealed by crystal structures of human secreted phospholipase A2 group IIE
Sci Rep, 7, 2017

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