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PDB: 21237 results

6G1M
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BU of 6g1m by Molmil
Amine Dehydrogenase from Petrotoga mobilis; open and closed form
Descriptor: Dihydrodipicolinate reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Beloti, L, Frese, A, Mayol, O, Vaxelaire-Vergne, C, Grogan, G.
Deposit date:2018-03-21
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A family of native amine dehydrogenases for the asymmetric reductive amination of ketones
Nat Catal, 2019
6G1Z
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BU of 6g1z by Molmil
Crystal structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state.
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, ...
Authors:Sauthof, L, Schmidt, A, Szczepek, M, Scheerer, P.
Deposit date:2018-03-22
Release date:2018-11-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural snapshot of a bacterial phytochrome in its functional intermediate state.
Nat Commun, 9, 2018
6G42
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BU of 6g42 by Molmil
Crystal structure of mavirus penton protein
Descriptor: Minor capsid protein
Authors:Born, D, Reuter, L, Meinhart, A, Reinstein, J.
Deposit date:2018-03-26
Release date:2018-07-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Capsid protein structure, self-assembly, and processing reveal morphogenesis of the marine virophage mavirus.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G6O
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BU of 6g6o by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63
Descriptor: GLYCEROL, Ika8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G8A
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BU of 6g8a by Molmil
Lysozyme solved by Native SAD from a dataset collected in 5 seconds at 1 A wavelength with JUNGFRAU detector
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Leonarski, F, Olieric, V, Vera, L, Redford, S, Wang, M.
Deposit date:2018-04-08
Release date:2018-08-01
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (1.143 Å)
Cite:Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector.
Nat. Methods, 15, 2018
6G8J
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BU of 6g8j by Molmil
14-3-3sigma in complex with a A130beta3A mutated YAP pS127 phosphopeptide
Descriptor: 14-3-3 protein sigma, ACE-ARG-ALA-HIS-SEP-SER-PRO-BAL-SER-LEU-GLN, CHLORIDE ION, ...
Authors:Andrei, S.A, Thijssen, V, Brunsveld, L, Ottmann, C, Milroy, L.G.
Deposit date:2018-04-09
Release date:2019-04-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:A study on the effect of synthetic alpha-to-beta3-amino acid mutations on the binding of phosphopeptides to 14-3-3 proteins.
Chem.Commun.(Camb.), 55, 2019
6GA2
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BU of 6ga2 by Molmil
Bacteriorhodopsin, dark state, cell 2
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Barends, T.R.M, Schlichting, I.
Deposit date:2018-04-11
Release date:2019-04-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019
6GA9
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BU of 6ga9 by Molmil
BACTERIORHODOPSIN, 390 FS STATE, REAL-SPACE REFINED AGAINST 15% EXTRAPOLATED STRUCTURE FACTORS
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Schlichting, I.
Deposit date:2018-04-11
Release date:2019-04-24
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019
6FZ0
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BU of 6fz0 by Molmil
Crystal structure of the metY SAM V riboswitch
Descriptor: MAGNESIUM ION, S-ADENOSYLMETHIONINE, SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-03-13
Release date:2018-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structure and ligand binding of the SAM-V riboswitch.
Nucleic Acids Res., 46, 2018
6G6X
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BU of 6g6x by Molmil
14-3-3sigma in complex with a P129beta3P mutated YAP pS127 phosphopeptide
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, SODIUM ION, ...
Authors:Andrei, S.A, Thijssen, V, Brunsveld, L, Ottmann, C, Milroy, L.G.
Deposit date:2018-04-03
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:A study on the effect of synthetic alpha-to-beta3-amino acid mutations on the binding of phosphopeptides to 14-3-3 proteins.
Chem.Commun.(Camb.), 55, 2019
6G1H
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BU of 6g1h by Molmil
Amine Dehydrogenase from Petrotoga mobilis; open form
Descriptor: 1,2-ETHANEDIOL, Dihydrodipicolinate reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Beloti, L, Frese, A, Mayol, O, Vergne-Vaxelaire, C, Grogan, G.
Deposit date:2018-03-21
Release date:2019-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A family of native amine dehydrogenases for the asymmetric reductive amination of ketones
Nat Catal, 2019
6G8I
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BU of 6g8i by Molmil
14-3-3sigma in complex with a R124beta3R mutated YAP pS127 phosphopeptide
Descriptor: 14-3-3 protein sigma, ALA-HIS-SEP-SER-PRO-ALA-SER-LEU-GLN, CHLORIDE ION, ...
Authors:Andrei, S.A, Thijssen, V, Brunsveld, L, Ottmann, C, Milroy, L.G.
Deposit date:2018-04-09
Release date:2019-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A study on the effect of synthetic alpha-to-beta3-amino acid mutations on the binding of phosphopeptides to 14-3-3 proteins.
Chem.Commun.(Camb.), 55, 2019
6G8Q
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BU of 6g8q by Molmil
14-3-3sigma in complex with a A130beta3A and Q133beta3Q mutated YAP pS127 phosphopeptide
Descriptor: 14-3-3 protein sigma, CALCIUM ION, CHLORIDE ION, ...
Authors:Andrei, S.A, Thijssen, V, Brunsveld, L, Ottmann, C, Milroy, L.G.
Deposit date:2018-04-09
Release date:2019-04-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A study on the effect of synthetic alpha-to-beta3-amino acid mutations on the binding of phosphopeptides to 14-3-3 proteins.
Chem.Commun.(Camb.), 55, 2019
6GDT
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BU of 6gdt by Molmil
Crystal structure of exo-glucosidase/glucosaminidase VC0615 from Vibrio Cholerae
Descriptor: 1,2-ETHANEDIOL, Endoglucanase-related protein
Authors:Wu, L, Davies, G.J.
Deposit date:2018-04-24
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structure of the GH9 glucosidase/glucosaminidase from Vibrio cholerae.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6GDU
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BU of 6gdu by Molmil
Structure of CutA from Synechococcus elongatus PCC7942
Descriptor: Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020
6FVC
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BU of 6fvc by Molmil
Protein environment affects the water-tryptophan binding mode. Molecular dynamics simulations of Engrailed homeodomain mutants
Descriptor: Segmentation polarity homeobox protein engrailed
Authors:Trosanova, Z, Zachrdla, M, Jansen, S, Srb, P, Zidek, L, Kozelka, J.
Deposit date:2018-03-02
Release date:2019-04-03
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants.
Phys Chem Chem Phys, 20, 2018
6GF0
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BU of 6gf0 by Molmil
Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip
Descriptor: Lysozyme C
Authors:Doak, R.B, Gorel, A, Foucar, L, Gruenbein, M.L, Hilpert, M, Kloos, M, Nass Kovacs, G, Roome, C, Shoeman, R.L, Stricker, M, Tono, K, You, D, Ueda, K, Sherrel, D, Owen, R, Barends, T.R.M, Schlichting, I.
Deposit date:2018-04-27
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystallography on a chip - without the chip: sheet-on-sheet sandwich.
Acta Crystallogr D Struct Biol, 74, 2018
6GLU
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BU of 6glu by Molmil
Crystal structure of hMTH1 D120N in complex with LW14 in the presence of acetate
Descriptor: 1~{H}-imidazo[4,5-b]pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase
Authors:Eberle, S.A, Wiedmer, L, Sledz, P, Caflisch, A.
Deposit date:2018-05-23
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:hMTH1 D120N in complex with LW14
To Be Published
6GHX
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BU of 6ghx by Molmil
Alzheimer's Amyloid-Beta Peptide Fragment 31-35 in Complex with Cd-substituted Thermolysin
Descriptor: CADMIUM ION, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Leite, J.P, Gales, L.
Deposit date:2018-05-09
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.156 Å)
Cite:Alzheimer's A beta1-40peptide degradation by thermolysin: evidence of inhibition by a C-terminal A beta product.
FEBS Lett., 593, 2019
6GI6
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BU of 6gi6 by Molmil
Crystal structure of the ACVR1 (ALK2) kinase in complex with a Quinazolinone based ALK2 inhibitor with a 5-methyl core.
Descriptor: 1,2-ETHANEDIOL, 5-methyl-6-quinolin-5-yl-3~{H}-quinazolin-4-one, Activin receptor type-1, ...
Authors:Williams, E, Hudson, L, Bezerra, G.A, Sorrell, F, Mahajan, P, Kupinska, K, Hoelder, S, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
Deposit date:2018-05-10
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Novel Quinazolinone Inhibitors of ALK2 Flip between Alternate Binding Modes: Structure-Activity Relationship, Structural Characterization, Kinase Profiling, and Cellular Proof of Concept.
J. Med. Chem., 61, 2018
6GIH
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BU of 6gih by Molmil
Crystal Structure of CK2alpha with CAM187 bound
Descriptor: ACETATE ION, Casein kinase II subunit alpha, [3-chloranyl-5-(1~{H}-indol-4-yl)phenyl]methanamine
Authors:Brear, P, Iegre, J, North, A, De Fusco, C, Georgiou, K, Lubin, A, Carro, L, Sore, H, Hyvonen, M, Spring, D.
Deposit date:2018-05-11
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Novel non-ATP competitive small molecules targeting the CK2 alpha / beta interface.
Bioorg. Med. Chem., 26, 2018
6GLF
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BU of 6glf by Molmil
Crystal structure of hMTH1 F27A in the presence of acetate
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase
Authors:Eberle, S.A, Wiedmer, L, Sledz, P, Caflisch, A.
Deposit date:2018-05-23
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:hMTH1 F27A
To Be Published
6GLL
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BU of 6gll by Molmil
Crystal structure of hMTH1 N33A in complex with LW14 in the presence of acetate
Descriptor: 1~{H}-imidazo[4,5-b]pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase, ACETATE ION, ...
Authors:Eberle, S.A, Wiedmer, L, Sledz, P, Caflisch, A.
Deposit date:2018-05-23
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.395 Å)
Cite:hMTH1 N33A in complex with LW14
To Be Published
6GNV
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BU of 6gnv by Molmil
Crystal Structure of Leishmania major N-Myristoyltransferase (NMT) With Bound Myristoyl-CoA and a isopropyl methyl indole aryl sulphonamide ligand
Descriptor: GLYCEROL, Glycylpeptide N-tetradecanoyltransferase, TETRADECANOYL-COA, ...
Authors:Robinson, D.A, Harrison, J.R, Brand, S, Smith, V.C, Thompson, S, Smith, A, Davies, K, Mok, N.Y, Torrie, L.S, Collie, I, Hallyburton, I, Norval, S, Simeons, F.R.C, Stojanovski, L, Frearson, J.A, Brenk, R, Wyatt, P.G, Gilbert, I.H, Read, K.D.
Deposit date:2018-05-31
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Molecular Hybridization Approach for the Design of Potent, Highly Selective, and Brain-Penetrant N-Myristoyltransferase Inhibitors.
J. Med. Chem., 61, 2018
6GPD
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BU of 6gpd by Molmil
Crystal structure of the ligand-free form of domain 1 from TmArgBP
Descriptor: Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Smaldone, G, Balasco, N, Ruggiero, A, Berisio, R, Vitagliano, L.
Deposit date:2018-06-05
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Domain communication in Thermotoga maritima Arginine Binding Protein unraveled through protein dissection.
Int. J. Biol. Macromol., 119, 2018

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