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PDB: 232 件

5ZQN
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BU of 5zqn by Molmil
Crystal structure of Mycobacterium tuberculosis HisB in complex with a ligand
分子名称: (2R,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate, CHLORIDE ION, Imidazoleglycerol-phosphate dehydratase, ...
著者Kumar, D, Pal, R.K, Biswal, B.K.
登録日2018-04-19
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Characterization of a triazole scaffold compound as an inhibitor of Mycobacterium tuberculosis imidazoleglycerol-phosphate dehydratase.
Proteins, 2021
5XDS
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BU of 5xds by Molmil
Crystal structure of Mycobacterium tuberculosis HisB bound with an inhibitor
分子名称: (2S)-2-azanyl-3-(4H-1,2,4-triazol-3-yl)propanoic acid, CHLORIDE ION, Imidazoleglycerol-phosphate dehydratase, ...
著者Kumar, D, Jha, B, Ahangar, M.S, Kumar, B.B.
登録日2017-03-29
公開日2018-04-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Characterization of a triazole scaffold compound as an inhibitor of Mycobacterium tuberculosis imidazoleglycerol-phosphate dehydratase.
Proteins, 2021
2K1F
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BU of 2k1f by Molmil
SUMO-3 from Drosophila melanogaster (dsmt3)
分子名称: CG4494-PA
著者Kumar, D, Misra, J.R, Misra, A.K, Chugh, J, Sharma, S, Hosur, R.V.
登録日2008-03-03
公開日2009-03-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3).
Proteins, 75, 2009
6O3V
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BU of 6o3v by Molmil
Crystal structure for RVA-VP3
分子名称: 1,2-ETHANEDIOL, GUANOSINE-5'-MONOPHOSPHATE, Protein VP3, ...
著者Kumar, D, Yu, X, Wang, Z, Hu, L, Prasad, V.
登録日2019-02-27
公開日2020-03-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献2.7 angstrom cryo-EM structure of rotavirus core protein VP3, a unique capping machine with a helicase activity.
Sci Adv, 6, 2020
6O6B
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BU of 6o6b by Molmil
Rotavirus A-VP3 (RVA-VP3)
分子名称: GUANOSINE-5'-MONOPHOSPHATE, Protein VP3
著者Kumar, D, Yu, X, Prasad, V, Wang, Z.
登録日2019-03-05
公開日2020-03-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A sub-atomic resolution cryo-EM of full-length Rotavirus A-VP3 (RVA-VP3)
To Be Published
2MW5
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BU of 2mw5 by Molmil
Backbone fold of Human Small Ubiquitin like Modifier protein-1 (SUMO-1) based on Prot3D-NMR approach.
分子名称: Small ubiquitin-related modifier 1
著者Kumar, D, Jaiswal, N, Raikwal, N, Shukla, V, Arora, A.
登録日2014-10-28
公開日2014-12-03
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Prot3DNMR: A simple and swift NMR strategy for Three-Dimentional structutral determination of proteins.
To be Published
5C82
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BU of 5c82 by Molmil
Crystal structure of Nourseothricin acetyltransferase
分子名称: D(-)-TARTARIC ACID, Nourseothricin acetyltransferase
著者Kumar, D, Ghosh, A, Taneja, B, Chakraborty, K.
登録日2015-06-25
公開日2016-06-29
最終更新日2018-07-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Nourseothricin acetyltransferase
To Be Published
2MOT
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BU of 2mot by Molmil
Backbone Structure of Actin Depolymerizing Factor (ADF) of Toxoplasma gondii Based on Prot3DNMR Approach
分子名称: Actin depolymerizing factor ADF
著者Kumar, D, Raikwal, N, Raval, I, Jaiswal, N, Shukla, V, Arora, A.
登録日2014-05-05
公開日2015-05-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Prot3DNMR: A Simple and Swift Strategy for Backbone Structure Determination of Proteins by NMR
To be Published
2LD9
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BU of 2ld9 by Molmil
Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs
分子名称: Ubiquitin
著者Kumar, D, Hosur, R.
登録日2011-05-18
公開日2011-06-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments
To be Published
2LJ3
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BU of 2lj3 by Molmil
PFBD: High-throughput Strategy of Backbone fold Determination for small well-folded proteins in less than a day
分子名称: Spectrin alpha chain, brain
著者Kumar, D, Hosur, R.
登録日2011-09-04
公開日2011-12-07
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献PFBD: High-throughput Strategy of Backbone fold Determination for small well-folded proteins in less than a day
To be Published
6KHH
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BU of 6khh by Molmil
Crystal Structure of HisB from Mycobacterium tuberculosis
分子名称: ACETAMIDE, CHLORIDE ION, Imidazoleglycerol-phosphate dehydratase, ...
著者Kumar, D, Jha, B, Pal, R.K, Biswal, B.K.
登録日2019-07-15
公開日2020-07-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Characterization of a triazole scaffold compound as an inhibitor of Mycobacterium tuberculosis imidazoleglycerol-phosphate dehydratase.
Proteins, 2021
4LS9
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BU of 4ls9 by Molmil
Structure of mycobacterial nrnA homolog reveals multifunctional nuclease activities
分子名称: DHH family protein, GLYCEROL, MANGANESE (II) ION
著者Kumar, D, Srivastav, R, Grover, A, Manjasetty, B.A, Sharma, R, Taneja, B.
登録日2013-07-22
公開日2014-07-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases
Nucleic Acids Res., 42, 2014
3DEC
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BU of 3dec by Molmil
Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron
分子名称: Beta-galactosidase, POTASSIUM ION
著者Kumaran, D, Bonanno, J, Romero, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-06-09
公開日2008-06-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of a Glycosyl Hydrolases Family 2 protein from Bacteroides thetaiotaomicron.
To be Published
4KPK
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BU of 4kpk by Molmil
Crystal structure of a enoyl-CoA hydratase from Shewanella pealeana ATCC 700345
分子名称: 1,2-ETHANEDIOL, Enoyl-CoA hydratase/isomerase
著者Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Al Obaidi, N, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-05-13
公開日2013-05-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Crystal structure of a enoyl-CoA hydratase from Shewanella pealeana ATCC 700345
To be Published
4KD6
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BU of 4kd6 by Molmil
Crystal structure of a Enoyl-CoA hydratase/isomerase from Burkholderia graminis C4D1M
分子名称: Enoyl-CoA hydratase/isomerase
著者Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Al Obaidi, N, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-04-24
公開日2013-07-24
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of a Enoyl-CoA hydratase/isomerase from Burkholderia graminis C4D1M
To be Published
3DDB
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BU of 3ddb by Molmil
Crystal structure of the catalytic domain of Botulinum neurotoxin serotype a with a substrate analog peptide
分子名称: Botulinum neurotoxin A light chain, SULFATE ION, Synaptosomal-associated protein 25, ...
著者Kumaran, D, Swaminathan, S.
登録日2008-06-05
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Substrate binding mode and its implication on drug design for botulinum neurotoxin A
Plos Pathog., 4, 2008
3DDA
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BU of 3dda by Molmil
Crystal structure of the catalytic domain of Botulinum neurotoxin serotype a with a snap-25 peptide
分子名称: Botulinum neurotoxin A light chain, SULFATE ION, Synaptosomal-associated protein 25, ...
著者Kumaran, D, Swaminathan, S.
登録日2008-06-05
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Substrate binding mode and its implication on drug design for botulinum neurotoxin A
Plos Pathog., 4, 2008
1CQV
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BU of 1cqv by Molmil
CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN C2 AT 100K CRYSTALLIZED AT PH 5.0
分子名称: PROTEIN (STAPHYLOCOCCAL ENTEROTOXIN C2), ZINC ION
著者Kumaran, D, Swaminathan, S.
登録日1999-08-11
公開日1999-08-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Structure of staphylococcal enterotoxin C2 at various pH levels.
Acta Crystallogr.,Sect.D, 57, 2001
7K40
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BU of 7k40 by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor Boceprevir at 1.35 A Resolution
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, boceprevir (bound form)
著者Kumaran, D, Andi, B, Kreitler, D.F, Soares, A.S, Shi, W, Jakoncic, J, Fuchs, M.R, Keereetaweep, J, Shanklin, J, McSweeney, S.
登録日2020-09-14
公開日2020-09-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Hepatitis C virus NS3/4A inhibitors and other drug-like compounds as covalent binders of SARS-CoV-2 main protease.
Sci Rep, 12, 2022
2PGW
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BU of 2pgw by Molmil
Crystal structure of a putative muconate cycloisomerase from Sinorhizobium meliloti 1021
分子名称: GLYCEROL, Muconate cycloisomerase
著者Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2007-04-10
公開日2007-04-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of a putative muconate cycloisomerase from Sinorhizobium meliloti 1021
To be Published
1NJR
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BU of 1njr by Molmil
Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase
分子名称: 32.1 kDa protein in ADH3-RCA1 intergenic region, Xylitol
著者Kumaran, D, Eswaramoorthy, S, Studier, F.W, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-01-02
公開日2004-08-17
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and mechanism of ADP-ribose-1''-monophosphatase (Appr-1''-pase), a ubiquitous cellular processing enzyme
Protein Sci., 14, 2005
2OG9
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BU of 2og9 by Molmil
Crystal Structure of mandelate racemase/muconate lactonizing enzyme from Polaromonas sp. JS666
分子名称: CALCIUM ION, Mandelate racemase/muconate lactonizing enzyme
著者Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2007-01-05
公開日2007-02-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of mandelate racemase/muconate lactonizing enzyme from Polaromonas sp. JS666
To be Published
8GDW
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BU of 8gdw by Molmil
Crystal structure of Domain Related to Iron (DRI) from cyanobacteria
分子名称: Ssr1698 protein, ZINC ION
著者Kumaran, D, Grosjean, N, Blaby, E.C.
登録日2023-03-06
公開日2024-03-13
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria.
Nat Commun, 15, 2024
8GF4
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BU of 8gf4 by Molmil
Crystal structure of Domain Related to Iron (DRI) in complex with heme
分子名称: PROTOPORPHYRIN IX CONTAINING FE, Ssr1698 protein, ZINC ION
著者Kumaran, D, Blaby, E.C.
登録日2023-03-07
公開日2024-03-13
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria.
Nat Commun, 15, 2024
4ZJX
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BU of 4zjx by Molmil
Crystal structure of the catalytic domain of botulinum neurotoxin serotype A with a Novel Cyclic Peptide Inhibitor
分子名称: Botulinum neurotoxin type A, SULFATE ION, ZINC ION, ...
著者Kumaran, D, Swaminathan, S.
登録日2015-04-29
公開日2016-06-01
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of the catalytic domain of botulinum neurotoxin serotype A with a Novel Cyclic Peptide Inhibitor
To Be Published

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