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PDB: 91 results

3C9A
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BU of 3c9a by Molmil
High Resolution Crystal Structure of Argos bound to the EGF domain of Spitz
Descriptor: BROMIDE ION, Protein giant-lens, Protein spitz
Authors:Klein, D.E, Stayrook, S.E, Shi, F, Narayan, K, Lemmon, M.A.
Deposit date:2008-02-15
Release date:2008-05-20
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for EGFR ligand sequestration by Argos.
Nature, 453, 2008
3CA7
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BU of 3ca7 by Molmil
High Resolution Crystal Structure of the EGF domain of Spitz
Descriptor: Protein spitz
Authors:Klein, D.E, Stayrook, S.E, Lemmon, M.A.
Deposit date:2008-02-19
Release date:2008-05-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for EGFR ligand sequestration by Argos.
Nature, 453, 2008
3CGU
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BU of 3cgu by Molmil
Crystal Structure of unliganded Argos
Descriptor: Protein giant-lens
Authors:Klein, D.E, Stayrook, S.E, Lemmon, M.A.
Deposit date:2008-03-06
Release date:2008-05-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural basis for EGFR ligand sequestration by Argos.
Nature, 453, 2008
1JJ2
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BU of 1jj2 by Molmil
Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
Descriptor: 23S RRNA, 5S RRNA, CADMIUM ION, ...
Authors:Klein, D.J, Schmeing, T.M, Moore, P.B, Steitz, T.A.
Deposit date:2001-07-03
Release date:2001-08-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The kink-turn: a new RNA secondary structure motif.
EMBO J., 20, 2001
3FU2
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BU of 3fu2 by Molmil
Cocrystal structure of a class-I preQ1 riboswitch
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, CALCIUM ION, PreQ1 riboswitch
Authors:Klein, D.J, Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:2009-01-13
Release date:2009-03-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase
Nat.Struct.Mol.Biol., 16, 2009
2H0Z
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BU of 2h0z by Molmil
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-05-15
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2HO7
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BU of 2ho7 by Molmil
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-07-13
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
7LTG
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BU of 7ltg by Molmil
STRUCTURE OF HUMAN HDAC2 IN COMPLEX WITH APICIDIN
Descriptor: (3S,6S,9S,15aR)-9-[(2S)-butan-2-yl]-3-(6,6-dihydroxyoctyl)-6-[(1-methoxy-1H-indol-3-yl)methyl]octahydro-2H-pyrido[1,2-a][1,4,7,10]tetraazacyclododecine-1,4,7,10(3H,12H)-tetrone, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Beshore, D.C.
Deposit date:2021-02-19
Release date:2021-05-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Redefining the Histone Deacetylase Inhibitor Pharmacophore: High Potency with No Zinc Cofactor Interaction.
Acs Med.Chem.Lett., 12, 2021
7LTK
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BU of 7ltk by Molmil
STRUCTURE OF HUMAN HDAC2 IN COMPLEX WITH AN INHIBITOR THAT LACKS A ZINC BINDING GROUP (COMPOUND 12)
Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Beshore, D.C.
Deposit date:2021-02-19
Release date:2021-05-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Redefining the Histone Deacetylase Inhibitor Pharmacophore: High Potency with No Zinc Cofactor Interaction.
Acs Med.Chem.Lett., 12, 2021
7LTL
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BU of 7ltl by Molmil
STRUCTURE OF HUMAN HDAC2 IN COMPLEX WITH AN INHIBITOR LACKING A ZINC BINDING GROUP (COMPOUND 19)
Descriptor: (2R)-2-(5-hydroxy-2-methyl-1H-indol-3-yl)-N-{(1S)-1-[5-(2-methoxyquinolin-3-yl)-1H-imidazol-2-yl]pentyl}propanamide, ACETATE ION, CALCIUM ION, ...
Authors:Klein, D.J, Beshore, D.C.
Deposit date:2021-02-19
Release date:2021-05-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Redefining the Histone Deacetylase Inhibitor Pharmacophore: High Potency with No Zinc Cofactor Interaction.
Acs Med.Chem.Lett., 12, 2021
2GCS
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BU of 2gcs by Molmil
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-03-14
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2GCV
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BU of 2gcv by Molmil
Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-03-14
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2H0X
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BU of 2h0x by Molmil
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-05-15
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2H0S
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BU of 2h0s by Molmil
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme deoxy RNA inhibitor
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-05-15
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2H0W
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BU of 2h0w by Molmil
Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-05-15
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
2HO6
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BU of 2ho6 by Molmil
Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:2006-07-13
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
Science, 313, 2006
7MOY
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BU of 7moy by Molmil
Structure of HDAC2 in complex with an inhibitor (compound 19)
Descriptor: (1S)-6-ethyl-N-{(1S)-1-[5-(2-ethyl-1-oxo-1,2-dihydroisoquinolin-6-yl)-1H-imidazol-2-yl]-7,7-dihydroxynonyl}-6-azaspiro[2.5]octane-1-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2021-05-03
Release date:2021-07-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOT
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BU of 7mot by Molmil
Structure of HDAC2 in complex with an inhibitor (compound 9)
Descriptor: 5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2021-05-03
Release date:2021-07-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOS
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BU of 7mos by Molmil
Structure of HDAC2 in complex with a macrocyclic inhibitor (compound 4)
Descriptor: (3S,18S,20aR)-18-(6,6-dihydroxyoctyl)-1,5,6,7,8,18,19,20a-octahydro-4H-14,17-epiminoazeto[1,2-g][1,7,10,13]benzoxatriazacycloheptadecin-20(2H)-one, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2021-05-03
Release date:2021-07-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOX
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BU of 7mox by Molmil
Structure of HDAC2 in complex with an inhibitor (compound 14)
Descriptor: (1S)-N-[(1S)-7,7-dihydroxy-1-{4-[(1R,4S)-1,2,3,4-tetrahydro-1,4-methanonaphthalen-6-yl]-1H-imidazol-2-yl}nonyl]-6-methyl-6-azaspiro[2.5]octane-1-carboxamide, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2021-05-03
Release date:2021-07-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
7MOZ
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BU of 7moz by Molmil
Structure of HDAC2 in complex with a macrocyclic inhibitor (compound 25)
Descriptor: (1R,3S,6S,18R,27R)-6-(6,6-dihydroxyoctyl)-5,8,18,27,34-pentaazahexacyclo[25.2.2.1~7,10~.1~11,15~.1~14,18~.0~1,3~]tetratriaconta-7,9,11(33),12,14,16-hexaene-4,32-dione (non-preferred name), CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Klein, D.J, Yu, W.
Deposit date:2021-05-03
Release date:2021-07-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.543 Å)
Cite:Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.
Bioorg.Med.Chem.Lett., 47, 2021
1DSV
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BU of 1dsv by Molmil
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER)
Descriptor: NUCLEIC ACID BINDING PROTEIN P14, ZINC ION
Authors:Klein, D.J, Johnson, P.E, Zollars, E.S, De Guzman, R.N, Summers, M.F.
Deposit date:2000-01-08
Release date:2000-01-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle.
Biochemistry, 39, 2000
1DSQ
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BU of 1dsq by Molmil
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (ZINC FINGER 1)
Descriptor: NUCLEIC ACID BINDING PROTEIN P14, ZINC ION
Authors:Klein, D.J, Johnson, P.E, Zollars, E.S, De Guzman, R.N, Summers, M.F.
Deposit date:2000-01-08
Release date:2000-01-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle.
Biochemistry, 39, 2000
5UHP
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BU of 5uhp by Molmil
Crystal structure of the core catalytic domain of human O-GlcNAcase
Descriptor: GLYCEROL, O-GlcNAcase TIM-barrel domain, O-GlcNAcase stalk domain
Authors:Klein, D.J, Elsen, N.L.
Deposit date:2017-01-11
Release date:2017-03-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal structure of the core catalytic domain of human O-GlcNAcase and molecular basis of activity and inhibition
To Be Published
5UHL
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BU of 5uhl by Molmil
Crystal structure of the core catalytic domain of human O-GlcNAcase complexed with Thiamet G
Descriptor: (2Z,3aR,5R,6S,7R,7aR)-2-(ethylimino)-5-(hydroxymethyl)hexahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol, O-GlcNAcase TIM-barrel domain, O-GlcNAcase stalk domain
Authors:Klein, D.J, Elsen, N.L.
Deposit date:2017-01-11
Release date:2017-03-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Crystal structure of the core catalytic domain of human O-GlcNAcase and molecular basis of activity and inhibition
To Be Published

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