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PDB: 96 results

1K2G
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Structural basis for the 3'-terminal guanosine recognition by the group I intron
Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
6KZ7
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The crystal structure of BAF155 SWIRM domain and N-terminal elongated hSNF5 RPT1 domain complex: Chromatin remodeling complex
Descriptor: SWI/SNF complex subunit SMARCC1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Authors:Lee, W, Han, J, Kim, I, Park, J.H, Joo, K, Lee, J, Suh, J.Y.
Deposit date:2019-09-23
Release date:2020-07-08
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.
Int J Mol Sci, 21, 2020
6LZP
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The solution structure of N-terminal elongated hSNF5 RPT1 domain
Descriptor: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Authors:Lee, W, Han, J, Kim, I, Suh, J.Y.
Deposit date:2020-02-19
Release date:2020-12-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.
Int J Mol Sci, 21, 2020
2A4V
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Crystal Structure of a truncated mutant of yeast nuclear thiol peroxidase
Descriptor: Peroxiredoxin DOT5
Authors:Choi, J, Choi, S, Chon, J.-K, Choi, J, Cha, M.-K, Kim, I.-H, Shin, W.
Deposit date:2005-06-29
Release date:2006-03-14
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin
Proteins, 61, 2005
1FNX
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SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT
Descriptor: AU-RICH RNA ELEMENT, HU ANTIGEN C
Authors:Inoue, M, Hirao, M, Kasashima, K, Kim, I.-S, Kawai, G, Kigawa, T, Sakamoto, H, Muto, Y, Yokoyama, S.
Deposit date:2000-08-24
Release date:2003-06-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation
To be Published, 2000
5XN4
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Anti-CRISPR protein AcrIIA4
Descriptor: Anti-CRISPR AcrIIA4
Authors:Suh, J.-Y, Kim, I.
Deposit date:2017-05-17
Release date:2018-03-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure and dynamics of anti-CRISPR AcrIIA4, the Cas9 inhibitor.
Sci Rep, 8, 2018
5Z6V
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Crystal structure of a substrate-binding protein from Rhodothermus marinus
Descriptor: ABC-type uncharacterized transport system periplasmic component-like protein
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2018-01-25
Release date:2018-05-30
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of a substrate-binding protein from Rhodothermus marinus reveals a single alpha / beta-domain.
Biochem. Biophys. Res. Commun., 497, 2018
6OA3
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Structure of human PARG complexed with JA2131
Descriptor: (8S)-1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]sulfanyl}-6-sulfanylidene-1,3,6,7,8,9-hexahydro-2H-purin-2-one, Poly(ADP-ribose) glycohydrolase
Authors:Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A.
Deposit date:2019-03-15
Release date:2019-12-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death.
Nat Commun, 10, 2019
6O9Y
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Structure of human PARG complexed with JA2-8
Descriptor: 7-[(2S)-2-hydroxy-3-(morpholin-4-yl)propyl]-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione, Poly(ADP-ribose) glycohydrolase
Authors:Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A.
Deposit date:2019-03-15
Release date:2019-12-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death.
Nat Commun, 10, 2019
6OA0
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Structure of human PARG complexed with JA2-9
Descriptor: 4-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)butanoic acid, Poly(ADP-ribose) glycohydrolase
Authors:Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A.
Deposit date:2019-03-15
Release date:2019-12-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death.
Nat Commun, 10, 2019
6O9X
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Structure of human PARG complexed with JA2-4
Descriptor: 1,3-dimethyl-8-{[2-(pyrrolidin-1-yl)ethyl]sulfanyl}-6-sulfanylidene-1,3,6,9-tetrahydro-2H-purin-2-one, Poly(ADP-ribose) glycohydrolase
Authors:Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A.
Deposit date:2019-03-15
Release date:2019-12-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death.
Nat Commun, 10, 2019
6OA1
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Structure of human PARG complexed with JA2120
Descriptor: 1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]sulfanyl}-3,7-dihydro-1H-purine-2,6-dione, Poly(ADP-ribose) glycohydrolase
Authors:Stegeman, R.A, Jones, D.E, Ellenberger, T, Kim, I.K, Tainer, J.A.
Deposit date:2019-03-15
Release date:2019-12-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Selective small molecule PARG inhibitor causes replication fork stalling and cancer cell death.
Nat Commun, 10, 2019
1P5P
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Solution Structure of HCV IRES Domain II (minimized average structure)
Descriptor: 77-MER
Authors:Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D.
Deposit date:2003-04-27
Release date:2003-11-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of HCV IRES domain II determined by NMR.
Nat.Struct.Biol., 10, 2003
1P5M
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Solution Structure of HCV IRES Domain IIa
Descriptor: 55-MER
Authors:Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D.
Deposit date:2003-04-27
Release date:2003-11-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of HCV IRES domain II determined by NMR.
Nat.Struct.Biol., 10, 2003
1P5O
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Solution Structure of HCV IRES Domain II
Descriptor: 77-MER
Authors:Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D.
Deposit date:2003-04-27
Release date:2003-11-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of HCV IRES domain II determined by NMR.
Nat.Struct.Biol., 10, 2003
1P5N
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Solution Structure of HCV IRES Domain IIb
Descriptor: 34-MER
Authors:Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D.
Deposit date:2003-04-27
Release date:2003-11-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of HCV IRES domain II determined by NMR.
Nat.Struct.Biol., 10, 2003
3L2P
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Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching Between Two DNA Bound States
Descriptor: 5'-D(*GP*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*CP*CP*G)-3', 5'-D(*GP*TP*CP*GP*GP*AP*CP*TP*G)-3', 5'-D(P*CP*GP*GP*GP*AP*TP*GP*CP*GP*TP*C)-3', ...
Authors:Cotner-Gohara, E.A, Kim, I.K, Hammel, M, Tainer, J.A, Tomkinson, A, Ellenberger, T.
Deposit date:2009-12-15
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching between Two DNA-Bound States.
Biochemistry, 49, 2010
5Y8R
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ZsYellow at pH 3.5
Descriptor: GFP-like fluorescent chromoprotein FP538
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-21
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Disruption of the hydrogen bonding network determines the pH-induced non-fluorescent state of the fluorescent protein ZsYellow by protonation of Glu221.
Biochem. Biophys. Res. Commun., 493, 2017
5Y4J
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Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Descriptor: MAGNESIUM ION, Xylitol, Xylose isomerase
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-03
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
5Y4I
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Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-03
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
5Y8Q
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ZsYellow at pH 8.0
Descriptor: GFP-like fluorescent chromoprotein FP538
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-21
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Disruption of the hydrogen bonding network determines the pH-induced non-fluorescent state of the fluorescent protein ZsYellow by protonation of Glu221.
Biochem. Biophys. Res. Commun., 493, 2017
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