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PDB: 647 results

4IJB
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BU of 4ijb by Molmil
Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR288
Descriptor: Engineered Protein OR288
Authors:Vorobiev, S, Su, M, Bick, M.J, Seetharaman, J, Khare, S, Maglaqui, M, Xiao, R, Lee, D, Day, A, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Hunt, J, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-12-21
Release date:2013-01-16
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Crystal Structure of Engineered Protein OR288.
To be Published
2VLN
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BU of 2vln by Molmil
N75A mutant of E9 DNase domain in complex with Im9
Descriptor: COLICIN E9, COLICIN-E9 IMMUNITY PROTEIN, MALONIC ACID
Authors:Keeble, A.H, Joachimiak, L.A, Mate, M.J, Meenan, N, Kirkpatrick, N, Baker, D, Kleanthous, C.
Deposit date:2008-01-15
Release date:2008-05-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
J.Mol.Biol., 379, 2008
2ERH
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BU of 2erh by Molmil
Crystal Structure of the E7_G/Im7_G complex; a designed interface between the colicin E7 DNAse and the Im7 immunity protein
Descriptor: Colicin E7, Colicin E7 immunity protein
Authors:Joachimiak, L.A, Kortemme, T, Stoddard, B.L, Baker, D.
Deposit date:2005-10-24
Release date:2006-07-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computational Design of a New Hydrogen Bond Network and at Least a 300-fold Specificity Switch at a Protein-Protein Interface.
J.Mol.Biol., 361, 2006
2VLO
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BU of 2vlo by Molmil
K97A mutant of E9 DNase domain in complex with Im9
Descriptor: COLICIN E9, COLICIN-E9 IMMUNITY PROTEIN, SULFATE ION
Authors:Keeble, A.H, Joachimiak, L.A, Mate, M.J, Meenan, N, Kirkpatrick, N, Baker, D, Kleanthous, C.
Deposit date:2008-01-15
Release date:2008-05-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases.
J.Mol.Biol., 379, 2008
4KYZ
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BU of 4kyz by Molmil
Three-dimensional structure of triclinic form of de novo design insertion domain, Northeast Structural Genomics Consortium (NESG) Target OR327
Descriptor: Designed protein OR327
Authors:Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Gleixner, J, Baker, D, Everett, J.K, Acton, T.B, Kornhaber, G, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-29
Release date:2013-07-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
4KYB
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BU of 4kyb by Molmil
Crystal Structure of de novo designed serine hydrolase OSH55.14_E3, Northeast Structural Genomics Consortium Target OR342
Descriptor: Designed Protein OR342, PHOSPHATE ION
Authors:Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Mao, L, Xiao, R, Lee, D, Raja, S, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-28
Release date:2013-06-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.909 Å)
Cite:Northeast Structural Genomics Consortium Target OR342
To be Published
4KY3
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BU of 4ky3 by Molmil
Three-dimensional Structure of the orthorhombic crystal of computationally designed insertion domain , Northeast Structural Genomics Consortium (NESG) Target OR327
Descriptor: designed protein OR327
Authors:Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Gleixner, J, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-28
Release date:2013-06-19
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.964 Å)
Cite:Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
2MRA
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BU of 2mra by Molmil
Solution NMR Structure of De novo designed protein, Northeast Structural Genomics Consortium (NESG) Target OR459
Descriptor: De novo designed protein OR459
Authors:Pulavarti, S.V.S.R.K, Kipnis, Y, Sukumaran, D, Maglaqui, M, Janjua, H, Mao, L, Xiao, R, Kornhaber, G, Baker, D, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-07-02
Release date:2014-09-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR Structure of De novo designed protein, Northeast Structural Genomics Consortium (NESG) Target OR459
To be Published
2L69
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BU of 2l69 by Molmil
Solution NMR Structure of de novo designed protein, P-loop NTPase fold, Northeast Structural Genomics Consortium Target OR28
Descriptor: Rossmann 2x3 fold protein
Authors:Liu, G, Koga, N, Koga, R, Xiao, R, Mao, A, Mao, B, Patel, D, Ciccosanti, C, Hamilton, K, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-11-17
Release date:2011-01-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of de novo designed rossmann 2x3 fold protein, Northeast Structural Genomics Consortium Target OR28
To be Published
2L9V
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BU of 2l9v by Molmil
NMR structure of the FF domain L24A mutant's folding transition state
Descriptor: Pre-mRNA-processing factor 40 homolog A
Authors:Korzhnev, D.M, Vernon, R.M, Religa, T.L, Hansen, A, Baker, D, Fersht, A.R, Kay, L.E.
Deposit date:2011-02-24
Release date:2011-09-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nonnative interactions in the FF domain folding pathway from an atomic resolution structure of a sparsely populated intermediate: an NMR relaxation dispersion study.
J.Am.Chem.Soc., 133, 2011
3HIZ
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BU of 3hiz by Molmil
Crystal structure of p110alpha H1047R mutant in complex with niSH2 of p85alpha
Descriptor: Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Amzel, L.M, Vogelstein, B, Gabelli, S.B, Mandelker, D.
Deposit date:2009-05-20
Release date:2009-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A frequent kinase domain mutation that changes the interaction between PI3K{alpha} and the membrane.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HHM
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BU of 3hhm by Molmil
Crystal structure of p110alpha H1047R mutant in complex with niSH2 of p85alpha and the drug wortmannin
Descriptor: (1S,6BR,9AS,11R,11BR)-9A,11B-DIMETHYL-1-[(METHYLOXY)METHYL]-3,6,9-TRIOXO-1,6,6B,7,8,9,9A,10,11,11B-DECAHYDRO-3H-FURO[4, 3,2-DE]INDENO[4,5-H][2]BENZOPYRAN-11-YL ACETATE, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform, ...
Authors:Amzel, L.M, Vogelstein, B, Gabelli, S.B, Mandelker, D.
Deposit date:2009-05-15
Release date:2009-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A frequent kinase domain mutation that changes the interaction between PI3K{alpha} and the membrane.
Proc.Natl.Acad.Sci.USA, 106, 2009
1F0K
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BU of 1f0k by Molmil
THE 1.9 ANGSTROM CRYSTAL STRUCTURE OF E. COLI MURG
Descriptor: SULFATE ION, UDP-N-ACETYLGLUCOSAMINE-N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE
Authors:Ha, S, Walker, D, Shi, Y, Walker, S.
Deposit date:2000-05-16
Release date:2000-07-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The 1.9 A crystal structure of Escherichia coli MurG, a membrane-associated glycosyltransferase involved in peptidoglycan biosynthesis.
Protein Sci., 9, 2000
8RGZ
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BU of 8rgz by Molmil
Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Descriptor: Envelope glycoprotein B, HDIT101 Fab heavy chain, HDIT101 Fab light chain
Authors:Kalbermatter, D, Seyfizadeh, N, Imhof, T, Ries, M, Mueller, C, Jenner, L, Blumenschein, E, Yendrzheyevskiy, A, Moog, K, Eckert, D, Engel, R, Diebolder, P, Chami, M, Krauss, J, Schaller, T, Arndt, M.
Deposit date:2023-12-14
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Development of a highly effective combination monoclonal antibody therapy against Herpes simplex virus.
J.Biomed.Sci., 31, 2024
8RH2
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BU of 8rh2 by Molmil
Trimeric HSV-2G gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Descriptor: Envelope glycoprotein B, HDIT102 Fab heavy chain, HDIT102 Fab light chain
Authors:Kalbermatter, D, Seyfizadeh, N, Imhof, T, Ries, M, Mueller, C, Jenner, L, Blumenschein, E, Yendrzheyevskiy, A, Moog, K, Eckert, D, Engel, R, Diebolder, P, Chami, M, Krauss, J, Schaller, T, Arndt, M.
Deposit date:2023-12-14
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Development of a highly effective combination monoclonal antibody therapy against Herpes simplex virus.
J.Biomed.Sci., 31, 2024
2MJZ
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BU of 2mjz by Molmil
Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling
Descriptor: Capsid protein G8P
Authors:Morag, O, Sgourakis, N.G, Baker, D, Goldbourt, A.
Deposit date:2014-01-22
Release date:2015-01-07
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope.
Proc.Natl.Acad.Sci.USA, 112, 2015
2MDW
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BU of 2mdw by Molmil
NMR structure of a strand-swapped dimer of the WW domain
Descriptor: Designed protein
Authors:Kier, B.L, Sheffler, W, Baker, D.
Deposit date:2013-09-18
Release date:2014-10-01
Method:SOLUTION NMR
Cite:Covalent Assembly of Homooligomeric Proteins Using Structure-templating Hubs
To be Published
2M89
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BU of 2m89 by Molmil
Solution structure of the Aha1 dimer from Colwellia psychrerythraea
Descriptor: Aha1 domain protein
Authors:Rossi, P, Sgourakis, N.G, Shi, L, Liu, G, Barbieri, C.M, Lee, H, Grant, T.D, Luft, J.R, Xiao, R, Acton, T.B, Montelione, G.T, Snell, E.H, Baker, D, Lange, O.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-05-09
Release date:2013-09-04
Last modified:2024-05-01
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.
Proteins, 83, 2015
2MDV
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BU of 2mdv by Molmil
NMR structure of beta alpha alpha 38
Descriptor: Designed protein
Authors:Kier, B.L, Sheffler, W, Baker, D.
Deposit date:2013-09-18
Release date:2014-10-01
Method:SOLUTION NMR
Cite:Covalent Assembly of Homooligomeric Proteins Using Structure-templating Hubs
To be Published
2MBM
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BU of 2mbm by Molmil
Solution NMR Structure of De novo designed Top7 Fold Protein Top7m13, Northeast Structural Genomics Consortium (NESG) Target OR33
Descriptor: Top7 Fold Protein Top7m13
Authors:Liu, G, Zanghellini, A.L, Chan, K, Xiao, R, Janjua, H, Kogan, S, Maglaqui, M, Ciccosanti, C, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-08-02
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution NMR Structure of De novo designed Top7 Fold Protein Top7m13, Northeast Structural Genomics Consortium (NESG) Target OR33
To be Published
2MV0
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BU of 2mv0 by Molmil
Solution NMR Structure of Maltose-binding protein from Escherichia coli, Northeast Structural Genomics Consortium (NESG) Target ER690
Descriptor: Maltose-binding periplasmic protein
Authors:Rossi, P, Lange, O.F, Sgourakis, N.G, Song, Y, Lee, H, Aramini, J.M, Ertekin, A, Xiao, R, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-09-18
Release date:2014-12-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
Proc.Natl.Acad.Sci.USA, 109, 2012
4J29
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BU of 4j29 by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR258.
Descriptor: Engineered Protein OR258
Authors:Vorobiev, S, Su, M, Koga, R, Seetharaman, J, Koga, N, Mao, L, Xiao, R, Kohan, E, Castelllanos, J, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-02-04
Release date:2013-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Engineered Protein OR258.
To be Published
4JLL
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BU of 4jll by Molmil
Crystal Structure of the evolved variant of the computationally designed serine hydrolase, OSH55.4_H1 covalently bound with FP-alkyne, Northeast Structural Genomics Consortium (NESG) Target OR273
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Tong, S, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-03-12
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Design of activated serine-containing catalytic triads with atomic-level accuracy.
Nat.Chem.Biol., 10, 2014
4A91
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BU of 4a91 by Molmil
Crystal structure of the glutamyl-queuosine tRNAAsp synthetase from E. coli complexed with L-glutamate
Descriptor: GLUTAMIC ACID, GLUTAMYL-Q TRNA(ASP) SYNTHETASE, ZINC ION
Authors:Blaise, M, Olieric, V, Sauter, C, Lorber, B, Roy, B, Karmakar, S, Banerjee, R, Becker, H.D, Kern, D.
Deposit date:2011-11-22
Release date:2012-01-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Glutamyl-Queuosine Trnaasp Synthetase Complexed with L-Glutamate: Structural Elements Mediating tRNA-Independent Activation of Glutamate and Glutamylation of Trnaasp Anticodon.
J.Mol.Biol., 381, 2008
4JVV
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BU of 4jvv by Molmil
Crystal structure of the evolved variant of the computationally designed serine hydrolase, OSH55.4_H1, covalently bound with diisopropyl fluorophosphate (DFP), Northeast Structural Genomics Consortium (NESG) Target OR273
Descriptor: evolved variant of the computationally designed serine hydrolase
Authors:Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Tong, S, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-03-26
Release date:2013-04-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Design of activated serine-containing catalytic triads with atomic-level accuracy.
Nat.Chem.Biol., 10, 2014

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