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PDB: 133 results

2DJY
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Solution structure of Smurf2 WW3 domain-Smad7 PY peptide complex
Descriptor: Mothers against decapentaplegic homolog 7, Smad ubiquitination regulatory factor 2
Authors:Chong, P.A, Lin, H, Wrana, J.L, Forman-Kay, J.D.
Deposit date:2006-04-06
Release date:2006-05-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:An Expanded WW Domain Recognition Motif Revealed by the Interaction between Smad7 and the E3 Ubiquitin Ligase Smurf2.
J.Biol.Chem., 281, 2006
2A36
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Solution structure of the N-terminal SH3 domain of DRK
Descriptor: Protein E(sev)2B
Authors:Forman-Kay, J.D, Bezsonova, I, Singer, A, Choy, W.-Y, Tollinger, M.
Deposit date:2005-06-23
Release date:2005-12-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Comparison of the Unstable drkN SH3 Domain and a Stable Mutant
Biochemistry, 44, 2005
2A37
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Solution structure of the T22G mutant of N-terminal SH3 domain of DRK (DRKN SH3 DOMAIN)
Descriptor: Protein E(sev)2B
Authors:Bezsonova, I, Singer, A, Choy, W.-Y, Tollinger, M, Forman-Kay, J.D.
Deposit date:2005-06-23
Release date:2005-12-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Comparison of the Unstable drkN SH3 Domain and a Stable Mutant
Biochemistry, 44, 2005
2EZ5
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Solution Structure of the dNedd4 WW3* Domain- Comm LPSY Peptide Complex
Descriptor: Commissureless LPSY Peptide, E3 ubiquitin-protein ligase NEDD4
Authors:Kanelis, V, Bruce, M.C, Skrynnikov, N.R, Rotin, D, Forman-Kay, J.D.
Deposit date:2005-11-10
Release date:2006-03-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Determinants for High-Affinity Binding in a Nedd4 WW3(*) Domain-Comm PY Motif Complex
Structure, 14, 2006
2K6D
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CIN85 Sh3-C domain in complex with ubiquitin
Descriptor: SH3 domain-containing kinase-binding protein 1, Ubiquitin
Authors:Forman-Kay, J, Bezsonova, I.
Deposit date:2008-07-07
Release date:2008-08-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Interactions between the three CIN85 SH3 domains and ubiquitin: implications for CIN85 ubiquitination.
Biochemistry, 47, 2008
1I5H
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SOLUTION STRUCTURE OF THE RNEDD4 WWIII DOMAIN-RENAL BP2 PEPTIDE COMPLEX
Descriptor: AMILORIDE-SENSITIVE SODIUM CHANNEL BETA-SUBUNIT, UBIQUITIN LIGASE NEDD4
Authors:Kanelis, V, Rotin, D, Forman-Kay, J.D.
Deposit date:2001-02-27
Release date:2001-05-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a Nedd4 WW domain-ENaC peptide complex.
Nat.Struct.Biol., 8, 2001
2JQZ
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Solution Structure of the C2 domain of human Smurf2
Descriptor: E3 ubiquitin-protein ligase SMURF2
Authors:Wiesner, S, Ogunjimi, A.A, Wang, H, Rotin, D, Sicheri, F, Wrana, J.L, Forman-Kay, J.D.
Deposit date:2007-06-15
Release date:2007-09-11
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Autoinhibition of the HECT-Type Ubiquitin Ligase Smurf2 through Its C2 Domain
Cell(Cambridge,Mass.), 130, 2007
2KXQ
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Solution Structure of Smurf2 WW2 and WW3 bound to Smad7 PY motif containing peptide
Descriptor: E3 ubiquitin-protein ligase SMURF2, Smad7 PY motif containing peptide
Authors:Chong, A, Lin, H, Wrana, J, Forman-Kay, J.D.
Deposit date:2010-05-11
Release date:2010-10-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Coupling of tandem Smad ubiquitination regulatory factor (Smurf) WW domains modulates target specificity.
Proc.Natl.Acad.Sci.USA, 107, 2010
2LC4
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Solution Structure of PilP from Pseudomonas aeruginosa
Descriptor: PilP protein
Authors:Howell, P, Tammam, S, Chong, P, Forman-Kay, J.D.
Deposit date:2011-04-22
Release date:2011-12-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Characterization of the PilN, PilO and PilP type IVa pilus subcomplex.
Mol.Microbiol., 82, 2011
1G0V
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THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT, MVV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEASE A INHIBITOR 3, PROTEINASE A, ...
Authors:Phylip, L.H, Lees, W, Brownsey, B.G, Bur, D, Dunn, B.M, Winther, J, Gustchina, A, Li, M, Copeland, T, Wlodawer, A, Kay, J.
Deposit date:2000-10-09
Release date:2001-04-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The potency and specificity of the interaction between the IA3 inhibitor and its target aspartic proteinase from Saccharomyces cerevisiae.
J.Biol.Chem., 276, 2001
1FMX
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STRUCTURE OF NATIVE PROTEINASE A IN THE SPACE GROUP P21
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SACCHAROPEPSIN, ...
Authors:Gustchina, A, Li, M, Phylip, L.H, Lees, W.E, Kay, J, Wlodawer, A.
Deposit date:2000-08-18
Release date:2002-07-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:An unusual orientation for Tyr75 in the active site of the aspartic proteinase from Saccharomyces cerevisiae.
Biochem.Biophys.Res.Commun., 295, 2002
1FMU
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STRUCTURE OF NATIVE PROTEINASE A IN P3221 SPACE GROUP.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, SACCHAROPEPSIN, ...
Authors:Gustchina, A, Li, M, Phylip, L.H, Lees, W.E, Kay, J, Wlodawer, A.
Deposit date:2000-08-18
Release date:2002-07-31
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An unusual orientation for Tyr75 in the active site of the aspartic proteinase from Saccharomyces cerevisiae.
Biochem.Biophys.Res.Commun., 295, 2002
1DPJ
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THE STRUCTURE OF PROTEINASE A COMPLEXED WITH IA3 PEPTIDE INHIBITOR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEINASE A, PROTEINASE INHIBITOR IA3 PEPTIDE, ...
Authors:Li, M, Phylip, H.L, Lees, W.E, Winther, J.R, Dunn, B.M, Wlodawer, A, Kay, J, Guschina, A.
Deposit date:1999-12-27
Release date:2000-05-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The aspartic proteinase from Saccharomyces cerevisiae folds its own inhibitor into a helix.
Nat.Struct.Biol., 7, 2000
1DP5
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THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT INHIBITOR
Descriptor: PROTEINASE A, PROTEINASE INHIBITOR IA3, beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Li, M, Phylip, H.L, Lees, W.E, Winther, J.R, Dunn, B.M, Wlodawer, A, Kay, J, Guschina, A.
Deposit date:1999-12-23
Release date:2000-05-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The aspartic proteinase from Saccharomyces cerevisiae folds its own inhibitor into a helix.
Nat.Struct.Biol., 7, 2000
1K2F
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siah, Seven In Absentia Homolog
Descriptor: BETA-MERCAPTOETHANOL, ZINC ION, siah-1A protein
Authors:Polekhina, G, House, C.M, Traficante, N, Mackay, J.P, Relaix, F, Sassoon, D.A, Parker, M.W, Bowtell, D.D.L.
Deposit date:2001-09-26
Release date:2001-12-28
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Siah ubiquitin ligase is structurally related to TRAF and modulates TNF-alpha signaling.
Nat.Struct.Biol., 9, 2002
3UK3
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Crystal structure of ZNF217 bound to DNA
Descriptor: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', CHLORIDE ION, ...
Authors:Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P.
Deposit date:2011-11-08
Release date:2012-12-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Rediscovering DNA recognition by classical Zinc Fingers.
To be Published
7TO8
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BRD3-BD1 in complex with RaPID linear peptide 2xAcK.1 (diAcK.1)
Descriptor: 2xAcK.1 (diAcK.1), Bromodomain-containing protein 3, GLYCEROL
Authors:Patel, K, Low, J.K.K, Mackay, J.P.
Deposit date:2022-01-23
Release date:2023-01-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
7TOA
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BU of 7toa by Molmil
BRD3-BD1 in complex with RaPID linear peptide 3xAcK.1 (triAcK.1)
Descriptor: 3xAcK.1 (triAcK.1), Bromodomain-containing protein 3, GLYCEROL
Authors:Patel, K, Low, J.K.K, Mackay, J.P.
Deposit date:2022-01-23
Release date:2023-01-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome.
J.Biol.Chem., 299, 2023
1XZY
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Solution structure of the P30-trans form of Alpha Hemoglobin Stabilizing Protein (AHSP)
Descriptor: Alpha-hemoglobin stabilizing protein
Authors:Gell, D.A, Feng, L, Zhou, S, Kong, Y, Lee, C, Weiss, M.J, Shi, Y, Mackay, J.P.
Deposit date:2004-11-12
Release date:2004-12-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Molecular mechanism of AHSP-mediated stabilization of alpha-hemoglobin
Cell(Cambridge,Mass.), 119, 2004
1Y03
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Solution structure of a recombinant type I sculpin antifreeze protein
Descriptor: Antifreeze peptide SS-3
Authors:Kwan, A.H.Y, Fairley, K, Anderberg, P.I, Liew, C.W, Harding, M.M, Mackay, J.P.
Deposit date:2004-11-14
Release date:2005-03-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of a recombinant type I sculpin antifreeze protein
Biochemistry, 44, 2005
3G9Y
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Crystal structure of the second zinc finger from ZRANB2/ZNF265 bound to 6 nt ssRNA sequence AGGUAA
Descriptor: RNA (5'-R(*AP*GP*GP*UP*AP*A)-3'), ZINC ION, Zinc finger Ran-binding domain-containing protein 2
Authors:Loughlin, F.E, McGrath, A.P, Lee, M, Guss, J.M, Mackay, J.P.
Deposit date:2009-02-15
Release date:2009-03-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences
Proc.Natl.Acad.Sci.USA, 106, 2009
7JX7
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BRD2-BD2 in complex with a diacetylated-H2A.Z peptide
Descriptor: Bromodomain-containing protein 2, Diacetylated-H2A.Z peptide
Authors:Patel, K, Low, J.K.K, Mackay, J.P, Solomon, P.D.
Deposit date:2020-08-26
Release date:2020-12-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The bromodomains of BET family proteins can recognize diacetylated histone H2A.Z.
Protein Sci., 30, 2021
8TX8
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Crystal Structure of RBBP4 bound to ZNF512B peptide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ...
Authors:Deshpande, C.N, Mackay, J.P.
Deposit date:2023-08-22
Release date:2024-11-06
Last modified:2024-12-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:ZNF512B binds RBBP4 via a variant NuRD interaction motif and aggregates chromatin in a NuRD complex-independent manner.
Nucleic Acids Res., 52, 2024
8D4Y
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C-terminal SANT-SLIDE domain of human Chromodomain-helicase-DNA-binding protein 4 (CHD4)
Descriptor: Chromodomain-helicase-DNA-binding protein 4
Authors:Moghaddas Sani, H, Deshpande, C.N, Panjikar, S, Patel, K, Mackay, J.P.
Deposit date:2022-06-03
Release date:2022-12-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families.
Nat Commun, 13, 2022
7L4Z
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Structure of SARS-CoV-2 spike RBD in complex with cyclic peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACE-DTY-LYS-ALA-GLY-VAL-VAL-TYR-GLY-TYR-ASN-ALA-TRP-ILE-ARG-CYS-NH2, Spike protein S1
Authors:Christie, M, Mackay, J.P, Passioura, T, Payne, R.J.
Deposit date:2020-12-21
Release date:2021-06-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.96 Å)
Cite:Discovery of Cyclic Peptide Ligands to the SARS-CoV-2 Spike Protein Using mRNA Display.
Acs Cent.Sci., 7, 2021

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