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PDB: 74 件
2YS6
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Crystal structure of GAR synthetase from Geobacillus kaustophilus
分子名称: ADENOSINE MONOPHOSPHATE, GLYCINE, Phosphoribosylglycinamide synthetase
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
2YS7
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Crystal structure of GAR synthetase from Geobacillus kaustophilus
分子名称: Phosphoribosylglycinamide synthetase
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-03
公開日2007-10-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
8JBD
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Crystal structure of Adenylosuccinate lyase from Thermus thermophilus HB8, TtPurB
分子名称: Adenylosuccinate lyase
著者Nemoto, N, Kawai, G, Sampei, G.
登録日2023-05-08
公開日2023-11-15
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 79, 2023
3AV3
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Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus
分子名称: MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase
著者Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-02-18
公開日2012-03-07
最終更新日2014-01-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
3AUF
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Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii
分子名称: Glycinamide ribonucleotide transformylase 1
著者Kanagawa, M, Baba, S, Nagira, T, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-02-03
公開日2012-03-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
1J1H
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Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
分子名称: Small Protein B
著者Someya, T, Nameki, N, Hosoi, H, Suzuki, S, Hatanaka, H, Fujii, M, Terada, T, Shirouzu, M, Inoue, Y, Shibata, T, Kuramitsu, S, Yokoyama, S, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-12-04
公開日2003-02-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
FEBS Lett., 535, 2003
2RRC
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Solution Structure of RNA aptamer against AML1 Runt domain
分子名称: 5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
著者Nomura, Y, Fujiwara, K, Chiba, M, Fukunaga, J, Tanaka, Y, Iibuchi, H, Tanaka, T, Nakamura, Y, Kawai, G, Kozu, T, Sakamoto, T.
登録日2010-06-23
公開日2011-06-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
1IT1
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Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F
分子名称: HEME C, cytochrome c3
著者Harada, E, Fukuoka, Y, Ohmura, T, Fukunishi, A, Kawai, G, Fujiwara, T, Akutsu, H.
登録日2001-12-29
公開日2002-07-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.
J.Mol.Biol., 319, 2002
5AVM
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Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
分子名称: Phosphoribosylformylglycinamidine cyclo-ligase, SULFATE ION
著者Kanagawa, M, Baba, S, Watanabe, Y, Nakagawa, N, Ebihara, A, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2015-06-23
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus
J.Biochem., 159, 2016
2F87
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Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus
分子名称: SRP RNA
著者Okada, K, Takahashi, M, Sakamoto, T, Nakamura, K, Kanai, A, Kawai, G
登録日2005-12-02
公開日2006-08-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus
Nucleosides Nucleotides Nucleic Acids, 25, 2006
3AHU
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Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
分子名称: 5'-R(*AP*GP*AP*GP*AP*G)-3', Protein hfq
著者Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
登録日2010-04-29
公開日2011-07-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
To be Published
1WKS
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Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
分子名称: 5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3'
著者Baba, S, Kajikawa, M, Okada, N, Kawai, G.
登録日2004-06-04
公開日2004-06-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2
Rna, 10, 2004
1XWP
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Solution structure of AUCGCA loop
分子名称: 5'-R(*GP*GP*AP*GP*AP*UP*CP*GP*CP*AP*CP*UP*CP*CP*A)-3'
著者Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y.
登録日2004-11-02
公開日2005-02-15
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A
Nucleic Acids Res., 33, 2005
1XWU
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Solution structure of ACAUAGA loop
分子名称: 5'-R(*CP*GP*AP*AP*AP*CP*AP*UP*AP*GP*AP*UP*UP*CP*GP*A)-3'
著者Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y.
登録日2004-11-02
公開日2005-02-15
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A
Nucleic Acids Res., 33, 2005
2D17
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Solution RNA structure of stem-bulge-stem region of the HIV-1 dimerization initiation site
分子名称: 5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer
分子名称: RNA
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer
分子名称: RNA
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
3VIU
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Crystal structure of PurL from thermus thermophilus
分子名称: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Suzuki, S, Yanai, H, Kanagawa, M, Tamura, S, Watanabe, Y, Fuse, K, Baba, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-10-12
公開日2012-01-18
最終更新日2012-04-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 68, 2012
2CUW
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Crystal Structure of Thermus thermophilus PurS, one of the subunits of Formylglycinamide Ribonucleotide Amidotransferase in the purine biosynthetic pathway
分子名称: PurS
著者Yanai, H, Kanagawa, M, Sampei, G, Kawai, G, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-30
公開日2005-11-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Thermus thermophilus PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway
To be Published
2D18
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Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the extended-duplex dimer
分子名称: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
7FGT
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Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA)
分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*GP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*TP*CP*TP*T)-3'), ~{N}-[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]-1-methyl-4-[3-[[1-methyl-4-[[1-methyl-4-[3-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazole-2-carboxamide
著者Takase, N, Kawai, G, Igarashi, W, Katagiri, T.
登録日2021-07-28
公開日2022-08-03
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA)
To be published
7EXY
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T-hairpin structure found in the RNA element involved in the piRNA biogenesis
分子名称: RNA (5'-R(*UP*UP*GP*GP*UP*UP*UP*GP*AP*UP*UP*CP*CP*AP*AP*G)-3')
著者Takase, N, Kawai, G.
登録日2021-05-29
公開日2022-03-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献T-hairpin structure found in the RNA element involved in piRNA biogenesis.
Rna, 28, 2022
2D19
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Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the kissing-loop dimer
分子名称: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2YWC
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Crystal structure of GMP synthetase from Thermus thermophilus in complex with XMP
分子名称: GMP synthase [glutamine-hydrolyzing], XANTHOSINE-5'-MONOPHOSPHATE
著者Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2007-10-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of GMP synthetase from Thermus thermophilus
To be Published
2YWV
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Crystal structure of SAICAR synthetase from Geobacillus kaustophilus
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Phosphoribosylaminoimidazole succinocarboxamide synthetase, ...
著者Kanagawa, M, Baba, S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-23
公開日2007-10-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of SAICAR synthetase from Geobacillus kaustophilus
To be Published

224004

件を2024-08-21に公開中

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