Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 248 results

1EVL
DownloadVisualize
BU of 1evl by Molmil
CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH A THREONYL ADENYLATE ANALOG
Descriptor: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE, THREONYL-TRNA SYNTHETASE, ZINC ION
Authors:Sankaranarayanan, R, Dock-Bregeon, A.C, Rees, B, Moras, D.
Deposit date:2000-04-20
Release date:2000-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.
Nat.Struct.Biol., 7, 2000
2TEP
DownloadVisualize
BU of 2tep by Molmil
PEANUT LECTIN COMPLEXED WITH T-ANTIGENIC DISACCHARIDE
Descriptor: CALCIUM ION, MANGANESE (II) ION, PROTEIN (PEANUT LECTIN), ...
Authors:Ravishankar, R, Ravindran, M, Suguna, K, Surolia, A, Vijayan, M.
Deposit date:1999-04-05
Release date:1999-04-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Specificity of Peanut Agglutinin for Thomsen-Friedenreich Antigen is Mediated by Water-Bridges
Curr.Sci., 72, 1997
3D2C
DownloadVisualize
BU of 3d2c by Molmil
Structure of 4D3, a thermostable mutant of Bacillus subtilis lipase obtained through directed evolution
Descriptor: Lipase
Authors:Sankaranarayanan, R, Kamal, M.Z.
Deposit date:2008-05-08
Release date:2008-06-03
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Thermostable Bacillus subtilis lipases: in vitro evolution and structural insight
J.Mol.Biol., 381, 2008
3D2B
DownloadVisualize
BU of 3d2b by Molmil
Structure of 2D9, a thermostable mutant of Bacillus subtilis lipase obtained through directed evolution
Descriptor: Lipase
Authors:Sankaranarayanan, R, Kamal, M.Z.
Deposit date:2008-05-08
Release date:2008-06-03
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Thermostable Bacillus subtilis lipases: in vitro evolution and structural insight
J.Mol.Biol., 381, 2008
8EXY
DownloadVisualize
BU of 8exy by Molmil
M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-26
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOF
DownloadVisualize
BU of 8eof by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EHQ
DownloadVisualize
BU of 8ehq by Molmil
Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-09-14
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
6QMR
DownloadVisualize
BU of 6qmr by Molmil
Complement factor D in complex with the inhibitor (S)-2-(2-((3'-(1-amino-2-hydroxyethyl)-[1,1'-biphenyl]-3-yl)methoxy)phenyl)acetic acid
Descriptor: 2-[2-[[3-[3-[(1~{S})-1-azanyl-2-oxidanyl-ethyl]phenyl]phenyl]methoxy]phenyl]ethanoic acid, Complement factor D
Authors:Karki, R, Powers, J, Mainolfi, N, Anderson, K, Belanger, D, Liu, D, Jendza, K, Gelin, C.F, Solovay, C, Mac Sweeeny, A, Delgado, O, Crowley, M, Liao, S.-M, Argikar, U.A, Flohr, S, La Bonte, L.R, Lorthiois, E.L, Vulpetti, A, Cumin, F, Brown, A, Adams, C, Jaffee, B, Mogi, M.
Deposit date:2019-02-08
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design, Synthesis, and Preclinical Characterization of Selective Factor D Inhibitors Targeting the Alternative Complement Pathway.
J.Med.Chem., 62, 2019
6QMT
DownloadVisualize
BU of 6qmt by Molmil
Complement factor D in complex with the inhibitor 2-(2-(3'-(aminomethyl)-[1,1'-biphenyl]-3-carboxamido)phenyl)acetic acid
Descriptor: 2-[2-[[3-[3-(aminomethyl)phenyl]phenyl]carbonylamino]phenyl]ethanoic acid, Complement factor D
Authors:Karki, R, Powers, J, Mainolfi, N, Anderson, K, Belanger, D, Liu, D, Jendza, K, Gelin, C.F, Solovay, C, Mac Sweeeny, A, Delgado, O, Crowley, M, Liao, S.-M, Argikar, U.A, Flohr, S, La Bonte, L.R, Lorthiois, E.L, Vulpetti, A, Cumin, F, Brown, A, Adams, C, Jaffee, B, Mogi, M.
Deposit date:2019-02-08
Release date:2019-04-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design, Synthesis, and Preclinical Characterization of Selective Factor D Inhibitors Targeting the Alternative Complement Pathway.
J.Med.Chem., 62, 2019
8EOS
DownloadVisualize
BU of 8eos by Molmil
M. tuberculosis RNAP elongation complex with NusG and CMPCPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (36-MER), DNA (38-MER), ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EJ3
DownloadVisualize
BU of 8ej3 by Molmil
M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP
Descriptor: DNA (29-MER), DNA (32-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-09-16
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOT
DownloadVisualize
BU of 8eot by Molmil
M. tuberculosis RNAP elongation complex with NusG
Descriptor: DNA (31-MER), DNA (33-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UXE
DownloadVisualize
BU of 7uxe by Molmil
Pseudomonas phage E217 small terminase (TerS)
Descriptor: Small terminase
Authors:Lokareddy, R.K, Hou, C.-F.D, Doll, S.G, Li, F, Gillilan, R, Forti, F, Briani, F, Cingolani, G.
Deposit date:2022-05-05
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Terminase Subunits from the Pseudomonas-Phage E217.
J.Mol.Biol., 434, 2022
8EOE
DownloadVisualize
BU of 8eoe by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UEB
DownloadVisualize
BU of 7ueb by Molmil
Photosynthetic assembly of Chlorobaculum tepidum (RC-FMO2)
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene, ...
Authors:Puskar, R, Truong, C.D, Swain, K, Li, S, Cheng, K.-W, Wang, T.Y, Poh, Y.-P, Liu, H, Chou, T.-F, Nannenga, B, Chiu, P.-L.
Deposit date:2022-03-21
Release date:2022-10-05
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Molecular asymmetry of a photosynthetic supercomplex from green sulfur bacteria.
Nat Commun, 13, 2022
7UEA
DownloadVisualize
BU of 7uea by Molmil
Photosynthetic assembly of Chlorobaculum tepidum (RC-FMO1)
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene, ...
Authors:Puskar, R, Truong, C.D, Swain, K, Li, S, Cheng, K.-W, Wang, T.Y, Poh, Y.-P, Liu, H, Chou, T.-F, Nannenga, B, Chiu, P.-L.
Deposit date:2022-03-21
Release date:2022-10-05
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Molecular asymmetry of a photosynthetic supercomplex from green sulfur bacteria.
Nat Commun, 13, 2022
1JAC
DownloadVisualize
BU of 1jac by Molmil
A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A MORACEAE PLANT LECTIN WITH A BETA-PRISM
Descriptor: JACALIN, methyl alpha-D-galactopyranoside
Authors:Sankaranarayanan, R, Sekar, K, Banerjee, R, Sharma, V, Surolia, A, Vijayan, M.
Deposit date:1996-05-22
Release date:1997-06-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:A novel mode of carbohydrate recognition in jacalin, a Moraceae plant lectin with a beta-prism fold.
Nat.Struct.Biol., 3, 1996
4PVZ
DownloadVisualize
BU of 4pvz by Molmil
Structure of yeast importin a bound to the membrane protein Nuclear Localization Signal sequence of INM protein Heh2
Descriptor: Importin subunit alpha, Inner nuclear membrane protein HEH2
Authors:Lokareddy, R.K, Hapsari, A.R, van Rheenen, M, Bhardwaj, A, Veenhoff, L.M, Cingolani, C.
Deposit date:2014-03-18
Release date:2015-08-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Distinctive Properties of the Nuclear Localization Signals of Inner Nuclear Membrane Proteins Heh1 and Heh2.
Structure, 23, 2015
3IT4
DownloadVisualize
BU of 3it4 by Molmil
The Crystal Structure of Ornithine Acetyltransferase from Mycobacterium tuberculosis (Rv1653) at 1.7 A
Descriptor: ACETATE ION, Arginine biosynthesis bifunctional protein argJ alpha chain, Arginine biosynthesis bifunctional protein argJ beta chain, ...
Authors:Sankaranarayanan, R, Cherney, M.M, Garen, C, Garen, G, Yuan, M, James, M.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2009-08-27
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The molecular structure of ornithine acetyltransferase from Mycobacterium tuberculosis bound to ornithine, a competitive inhibitor.
J.Mol.Biol., 397, 2010
4HRF
DownloadVisualize
BU of 4hrf by Molmil
Atomic structure of DUSP26
Descriptor: Dual specificity protein phosphatase 26
Authors:Lokareddy, R.K, Bhardwaj, A, Cingolani, G.
Deposit date:2012-10-27
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Atomic structure of dual-specificity phosphatase 26, a novel p53 phosphatase.
Biochemistry, 52, 2013
4XZR
DownloadVisualize
BU of 4xzr by Molmil
Structure of yeast importin a bound to the membrane protein Nuclear Localization Signal sequence of INM protein Heh1
Descriptor: Importin subunit alpha, Inner nuclear membrane protein SRC1
Authors:Lokareddy, R.K, Cingolani, G.
Deposit date:2015-02-04
Release date:2015-06-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Distinctive Properties of the Nuclear Localization Signals of Inner Nuclear Membrane Proteins Heh1 and Heh2.
Structure, 23, 2015
1FYF
DownloadVisualize
BU of 1fyf by Molmil
CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE COMPLEXED WITH A SERYL ADENYLATE ANALOG
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, THREONYL-TRNA SYNTHETASE, ZINC ION
Authors:Sankaranarayanan, R, Dock-Bregeon, A.C, Moras, D.
Deposit date:2000-09-29
Release date:2000-12-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem.
Cell(Cambridge,Mass.), 103, 2000
1QF3
DownloadVisualize
BU of 1qf3 by Molmil
PEANUT LECTIN COMPLEXED WITH METHYL-BETA-GALACTOSE
Descriptor: CALCIUM ION, MANGANESE (II) ION, PROTEIN (PEANUT LECTIN), ...
Authors:Ravishankar, R, Suguna, K, Surolia, A, Vijayan, M.
Deposit date:1999-04-06
Release date:1999-07-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of the complexes of peanut lectin with methyl-beta-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins.
Acta Crystallogr.,Sect.D, 55, 1999
5JJ3
DownloadVisualize
BU of 5jj3 by Molmil
Refined Structure of the Mature Virion Conformation of P22 Portal Protein
Descriptor: Portal protein
Authors:Lokareddy, R.K, Sankhala, R.S, Cingolani, G.
Deposit date:2016-04-22
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (7 Å)
Cite:Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.
Nat Commun, 8, 2017
2I6U
DownloadVisualize
BU of 2i6u by Molmil
Crystal Structure of Ornithine Carbamoyltransferase complexed with Carbamoyl Phosphate and L-Norvaline from Mycobacterium tuberculosis (Rv1656) at 2.2 A
Descriptor: NORVALINE, Ornithine carbamoyltransferase, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER, ...
Authors:Sankaranarayanan, R, Moradian, F, Cherney, L.T, Garen, C, Cherney, M.M, James, M.N.G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-08-29
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of ornithine carbamoyltransferase from Mycobacterium tuberculosis and its ternary complex with carbamoyl phosphate and L-norvaline reveal the enzyme's catalytic mechanism
J.Mol.Biol., 375, 2008

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon