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PDB: 57 results

6PLH
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BU of 6plh by Molmil
FAB fragment complexed with C-mannosylated tryptophan peptide
Descriptor: Fab 5G12 heavy chain, Fab 5G12 light chain, Interleukin-21 receptor, ...
Authors:John, A, Jarva, M.A, Goddard-Borger, E.D.
Deposit date:2019-06-30
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Yeast- and antibody-based tools for studying tryptophan C-mannosylation.
Nat.Chem.Biol., 17, 2021
7N50
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BU of 7n50 by Molmil
Structure of a bacterial gasdermin from Bradyrhizobium tropiciagri
Descriptor: Gasdermin
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2021-06-04
Release date:2021-06-23
Last modified:2022-01-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Bacterial gasdermins reveal an ancient mechanism of cell death.
Science, 375, 2022
7N52
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BU of 7n52 by Molmil
Structure of a bacterial gasdermin from Runella zeae
Descriptor: Gasdermin
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2021-06-04
Release date:2021-06-23
Last modified:2022-01-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacterial gasdermins reveal an ancient mechanism of cell death.
Science, 375, 2022
7N51
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BU of 7n51 by Molmil
Structure of a bacterial gasdermin from Vitiosangium sp.
Descriptor: Gasdermin
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2021-06-04
Release date:2021-06-16
Last modified:2022-01-26
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Bacterial gasdermins reveal an ancient mechanism of cell death.
Science, 375, 2022
8SL0
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BU of 8sl0 by Molmil
Structure of a bacterial gasdermin slinky-like oligomer
Descriptor: Gasdermin bGSDM
Authors:Johnson, A.G, Mayer, M.L, Kranzusch, P.J.
Deposit date:2023-04-20
Release date:2023-05-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and assembly of a bacterial gasdermin pore.
Nature, 628, 2024
1AKS
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BU of 1aks by Molmil
CRYSTAL STRUCTURE OF THE FIRST ACTIVE AUTOLYSATE FORM OF THE PORCINE ALPHA TRYPSIN
Descriptor: ALPHA TRYPSIN, CALCIUM ION
Authors:Johnson, A, Krishnaswamy, S, Sundaram, P.V, Pattabhi, V.
Deposit date:1996-07-24
Release date:1997-02-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The first structure at 1.8 A resolution of an active autolysate form of porcine alpha-trysoin.
Acta Crystallogr.,Sect.D, 53, 1997
8SS1
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BU of 8ss1 by Molmil
Structure of a bacterial death-like domain from Azospirillum sp.
Descriptor: Serine protease
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2023-05-08
Release date:2023-06-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:CARD-like domains mediate anti-phage defense in bacterial gasdermin systems.
Biorxiv, 2023
8SRZ
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BU of 8srz by Molmil
Structure of a bacterial death-like domain from Lysobacter enzymogenes
Descriptor: Probable serine protease FE772_23065
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2023-05-08
Release date:2023-06-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:CARD-like domains mediate anti-phage defense in bacterial gasdermin systems.
Biorxiv, 2023
1QQU
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BU of 1qqu by Molmil
CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH BOUND ACETATE ION
Descriptor: ACETATE ION, BETA TRYPSIN, CALCIUM ION
Authors:Johnson, A, Gautham, N, Pattabhi, V.
Deposit date:1999-06-09
Release date:2000-06-14
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure at 1.63 A resolution of the native form of porcine beta-trypsin: revealing an acetate ion binding site and functional water network.
Biochim.Biophys.Acta, 1435, 1999
8GBE
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BU of 8gbe by Molmil
Structure of a viral gasdermin protein A47 from Eptesipox virus
Descriptor: Protein A47
Authors:Johnson, A.G, Kranzusch, P.J.
Deposit date:2023-02-25
Release date:2023-03-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Structural homology screens reveal poxvirus-encoded proteins impacting inflammasome-mediated defenses.
Biorxiv, 2023
2OZR
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BU of 2ozr by Molmil
MMP13 Catalytic Domain Complexed with 4-{[1-methyl-2,4-dioxo-6-(3-phenylprop-1-yn-1-yl)-1,4-dihydroquinazolin-3(2H)-yl]methyl}benzoic acid
Descriptor: 4-{[1-METHYL-2,4-DIOXO-6-(3-PHENYLPROP-1-YN-1-YL)-1,4-DIHYDROQUINAZOLIN-3(2H)-YL]METHYL}BENZOIC ACID, ACETOHYDROXAMIC ACID, CALCIUM ION, ...
Authors:Johnson, A.R, Pavlovsky, A.G, Ortwine, D.F, Prior, F, Man, C.-F, Bornemeier, D.A, Banotai, C.A, Mueller, W.T, McConnell, P, Yan, C.H, Baragi, V, Lesch, C, Roark, W.H, Lie, J.J, Fasquelle, V, Wilson, M, Robertson, D, Datta, K, Guzman, R, Han, H.-K, Dyer, R.D.
Deposit date:2007-02-27
Release date:2007-07-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 that reduces cartilage damage in vivo without joint fibroplasia side effects.
J.Biol.Chem., 282, 2007
6PNR
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BU of 6pnr by Molmil
A GH31 family sulfoquinovosidase from E. rectale in complex with aza-sugar inhibitor IFGSQ
Descriptor: Alpha-glucosidase, SULFATE ION, [(3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)piperidin-3-yl]methanesulfonic acid
Authors:Jarva, M.A, Lingford, J.P, John, A, Goddard-Borger, E.D.
Deposit date:2019-07-03
Release date:2020-07-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A GH31 family sulfoquinovosidase from E. rectale in complex with aza-sugar inhibitor IFGSQ
To Be Published
6V1D
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BU of 6v1d by Molmil
Crystal structure of human trefoil factor 1
Descriptor: Trefoil factor 1
Authors:Jarva, M.A, Lingford, J.P, John, A, Scott, N.E, Goddard-Borger, E.D.
Deposit date:2019-11-20
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Trefoil factors share a lectin activity that defines their role in mucus.
Nat Commun, 11, 2020
6V1C
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BU of 6v1c by Molmil
Crystal structure of human trefoil factor 3 in complex with its cognate ligand
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-beta-D-galactopyranose, Trefoil factor 3
Authors:Jarva, M.A, Lingford, J.P, John, A, Scott, N.E, Goddard-Borger, E.D.
Deposit date:2019-11-20
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Trefoil factors share a lectin activity that defines their role in mucus.
Nat Commun, 11, 2020
6VLD
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BU of 6vld by Molmil
Crystal structure of human alpha 1,6-fucosyltransferase, FUT8 bound to GDP and A2SGP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ASPARAGINE, Alpha-(1,6)-fucosyltransferase, ...
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
5L7V
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BU of 5l7v by Molmil
Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.
Descriptor: (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol, glycoside hydrolase
Authors:Roth, C, Petricevic, M, John, A, Goddard-Borger, E.D, Davies, G.J, Williams, S.J.
Deposit date:2016-06-03
Release date:2017-03-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
Chem. Commun. (Camb.), 52, 2016
6VLG
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BU of 6vlg by Molmil
Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 bound to GDP
Descriptor: Alpha-(1,6)-fucosyltransferase, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION, ...
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
5L7U
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BU of 5l7u by Molmil
Crystal structure of BvGH123 with bound GalNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, CHLORIDE ION, Glycoside hydrolase
Authors:Roth, C, Petricevic, M, John, A, Goddard-Borger, E.D, Davies, G.J, Williams, S.J.
Deposit date:2016-06-03
Release date:2017-03-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
Chem. Commun. (Camb.), 52, 2016
6VLE
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BU of 6vle by Molmil
Crystal structure of human alpha 1,6-fucosyltransferase, FUT8 in its Apo-form
Descriptor: Alpha-(1,6)-fucosyltransferase, SULFATE ION
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.D.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
6VLF
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BU of 6vlf by Molmil
Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 in its Apo-form
Descriptor: 1,2-ETHANEDIOL, Alpha-(1,6)-fucosyltransferase, SULFATE ION
Authors:Jarva, M.A, Dramicanin, M, Lingford, J.P, Mao, R, John, A, Goddard-Borger, E.
Deposit date:2020-01-23
Release date:2020-02-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of substrate recognition and catalysis by fucosyltransferase 8.
J.Biol.Chem., 295, 2020
5L7R
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BU of 5l7r by Molmil
Crystal structure of BvGH123
Descriptor: 1,2-ETHANEDIOL, glycoside hydrolase
Authors:Roth, C, Petricevic, M, John, A, Goddard-Borger, E.D, Davies, G.J, Williams, S.J.
Deposit date:2016-06-03
Release date:2017-03-22
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
Chem. Commun. (Camb.), 52, 2016
7MYV
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BU of 7myv by Molmil
Plasmodium falciparum HAD5/PMM
Descriptor: MAGNESIUM ION, Phosphomannomutase
Authors:Frasse, P.M, Odom John, A.R, Goldberg, D.E.
Deposit date:2021-05-21
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Enzymatic and structural characterization of HAD5, an essential phosphomannomutase of malaria-causing parasites.
J.Biol.Chem., 298, 2022
1Q1S
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BU of 1q1s by Molmil
Mouse Importin alpha- phosphorylated SV40 CN peptide complex
Descriptor: Importin alpha-2 subunit, Large T antigen
Authors:Fontes, M.R.M, Teh, T, Toth, G, John, A, Pavo, I, Jans, D.A, Kobe, B.
Deposit date:2003-07-22
Release date:2004-03-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Role of flanking sequences and phosphorylation in the recognition of the simian-virus-40 large T-antigen nuclear localization sequences by importin-alpha
Biochem.J., 375, 2003
1Q1T
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BU of 1q1t by Molmil
Mouse Importin alpha: non-phosphorylated SV40 CN peptide complex
Descriptor: Importin alpha-2 subunit, Large T antigen
Authors:Fontes, M.R.M, Teh, T, Toth, G, John, A, Pavo, I, Jans, D.A, Kobe, B.
Deposit date:2003-07-22
Release date:2004-03-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Role of flanking sequences and phosphorylation in the recognition of the simian-virus-40 large T-antigen nuclear localization sequences by importin-alpha
Biochem.J., 375, 2003
7L0B
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BU of 7l0b by Molmil
Crystal structure of hydroxyacyl glutathione hydrolase (GloB) from Staphylococcus aureus, apoenzyme
Descriptor: Hydroxyacylglutathione hydrolase, SULFATE ION, ZINC ION
Authors:Miller, J.J, Jez, J.M, Odom John, A.R.
Deposit date:2020-12-11
Release date:2020-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure-guided microbial targeting of antistaphylococcal prodrugs.
Elife, 10, 2021

 

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