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PDB: 3272 results

1GCV
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BU of 1gcv by Molmil
DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS
Descriptor: HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H.
Deposit date:2000-08-08
Release date:2000-08-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
6Q9P
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BU of 6q9p by Molmil
Crystal structure of human Arginase-1 at pH 9.0 in complex with ABH
Descriptor: 2(S)-AMINO-6-BORONOHEXANOIC ACID, Arginase-1, MANGANESE (II) ION, ...
Authors:Grobben, Y, Uitdehaag, J.C.M, Zaman, G.J.R.
Deposit date:2018-12-18
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158.
J Struct Biol X, 4, 2020
4YNX
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BU of 4ynx by Molmil
Structure of YdiE from E. coli
Descriptor: SULFATE ION, Uncharacterized protein YdiE
Authors:Tame, J.R.H, Nishimura, K, Zhang, K.Y.J.
Deposit date:2015-03-11
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal and solution structure of YdiE from Escherichia coli
Acta Crystallogr.,Sect.F, 71, 2015
6QAF
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BU of 6qaf by Molmil
Crystal structure of human Arginase-1 at pH 9.0 in complex with CB-1158/INCB001158
Descriptor: Arginase-1, MANGANESE (II) ION, SODIUM ION, ...
Authors:Grobben, Y, Uitdehaag, J.C.M, Tabak, W.W.A, Zaman, G.J.R.
Deposit date:2018-12-19
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158.
J Struct Biol X, 4, 2020
6QLE
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BU of 6qle by Molmil
Structure of inner kinetochore CCAN complex
Descriptor: Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3,Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3, Central kinetochore subunit MCM16,Central kinetochore subunit MCM16,Inner kinetochore subunit MCM16,Mcm16p, Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
4YU0
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BU of 4yu0 by Molmil
Crystal structure of a tetramer of GluA2 TR mutant ligand binding domains bound with glutamate at 1.26 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTAMIC ACID, Glutamate receptor 2,Glutamate receptor 2, ...
Authors:Chebli, M, Salazar, H, Baranovic, J, Carbone, A.L, Ghisi, V, Faelber, K, Lau, A.Y, Daumke, O, Plested, A.J.R.
Deposit date:2015-03-18
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structure of the tetrameric GluA2 ligand-binding domain in complex with glutamate at 1.26 Angstroms resolution
To Be Published
1GCW
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BU of 1gcw by Molmil
CO form hemoglobin from mustelus griseus
Descriptor: CARBON MONOXIDE, PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE
Authors:Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H.
Deposit date:2000-08-08
Release date:2000-09-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
1GTT
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BU of 1gtt by Molmil
CRYSTAL STRUCTURE OF HPCE
Descriptor: 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL ISOMERASE/DECARBOXYLASE, CALCIUM ION
Authors:Tame, J.R.H, Namba, K, Dodson, E.J, Roper, D.I.
Deposit date:2002-01-18
Release date:2002-03-08
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Hpce, a Bifunctional Decarboxylase/Isomerase with a Multifunctional Fold.
Biochemistry, 41, 2002
4G08
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BU of 4g08 by Molmil
Crystal structure of the periplasmic domain of InvG
Descriptor: Protein InvG
Authors:Bergeron, J.R.C, Strynadka, N.C.J.
Deposit date:2012-07-09
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
2OYA
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BU of 2oya by Molmil
Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO
Descriptor: Macrophage receptor MARCO, SULFATE ION
Authors:Ojala, J.R.M, Pikkarainen, T, Tuuttila, A, Sandalova, T, Tryggvason, K.
Deposit date:2007-02-21
Release date:2007-04-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition.
J.Biol.Chem., 282, 2007
2OY3
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BU of 2oy3 by Molmil
Crystal structure analysis of the monomeric SRCR domain of mouse MARCO
Descriptor: MAGNESIUM ION, Macrophage receptor MARCO
Authors:Ojala, J.R.M, Pikkarainen, T, Tuuttila, A, Sandalova, T, Tryggvason, K.
Deposit date:2007-02-21
Release date:2007-04-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition.
J.Biol.Chem., 282, 2007
2NOO
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BU of 2noo by Molmil
Crystal Structure of Mutant NikA
Descriptor: IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein
Authors:Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
4Z0I
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BU of 4z0i by Molmil
Crystal structure of a tetramer of GluA2 ligand binding domains bound with glutamate at 1.45 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTAMIC ACID, Glutamate receptor 2,Glutamate receptor 2, ...
Authors:Baranovic, J, Chebli, M, Salazar, H, Carbone, A.L, Ghisi, V, Faelber, K, Lau, A.Y, Daumke, O, Plested, A.J.R.
Deposit date:2015-03-26
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the tetrameric wt GluA2 ligand-binding domain bound to glutamate at 1.45 Angstroms resolution
To Be Published
4ZCN
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BU of 4zcn by Molmil
Crystal structure of nvPizza2-S16S58
Descriptor: IODIDE ION, SULFATE ION, nvPizza2-S16S58
Authors:Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H.
Deposit date:2015-04-16
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of nvPizza2-S16S58
To Be Published
7MS2
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BU of 7ms2 by Molmil
Three-dimensional structure of a GH3 Beta-glucosidase from Clostridium thermocellum in complex with glycerol
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, GLYCEROL, ...
Authors:Almeida, L.R, Muniz, J.R.C.
Deposit date:2021-05-10
Release date:2022-05-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Three-dimensional structure of a GH3 Beta-glucosidase from Clostridium thermocellum in complex with glycerol
To Be Published
7NPF
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BU of 7npf by Molmil
Vibrio cholerae ParA2-ATPyS-DNA filament
Descriptor: AAA family ATPase, DNA (49-MER), MAGNESIUM ION, ...
Authors:Parker, A.V, Bergeron, J.R.C.
Deposit date:2021-02-26
Release date:2021-10-06
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:The structure of the bacterial DNA segregation ATPase filament reveals the conformational plasticity of ParA upon DNA binding.
Nat Commun, 12, 2021
3FLV
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BU of 3flv by Molmil
The crystal structure of human acyl-CoenzymeA binding domain containing 5
Descriptor: Acyl-CoA-binding domain-containing protein 5, COENZYME A, STEARIC ACID, ...
Authors:Ugochukwu, E, Roos, A, Yue, W.W, Shafqat, N, Salah, E, Savitsky, P, Muniz, J.R.C, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2008-12-19
Release date:2009-02-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of human acyl-Coenzyme A binding domain containing 5
To be Published
2JKV
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BU of 2jkv by Molmil
Structure of human Phosphogluconate Dehydrogenase in complex with NADPH at 2.53A
Descriptor: 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING, CHLORIDE ION, ...
Authors:Pilka, E.S, Kavanagh, K.L, von Delft, F, Muniz, J.R.C, Murray, J, Picaud, S, Guo, K, Edwards, A, Arrowsmith, C.H, Weigelt, J, Bountra, C, Oppermann, U.
Deposit date:2008-09-01
Release date:2009-09-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.532 Å)
Cite:Structure of Human Phosphogluconate Dehydrogenase in Complex with Nadph at 2.53A
To be Published
1NYG
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BU of 1nyg by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, FAMILY OF 20 STRUCTURES
Descriptor: FYN
Authors:Morton, C.J, Pugh, D.J.R, Campbell, I.D.
Deposit date:1996-04-22
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and peptide binding of the SH3 domain from human Fyn.
Structure, 4, 1996
7NPE
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BU of 7npe by Molmil
Vibrio cholerae ParA2-ADP
Descriptor: AAA family ATPase, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Parker, A.V, Bergeron, J.R.C.
Deposit date:2021-02-26
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The cryo-EM structure of the bacterial type I segregation filament reveals ParA s conformational plasticity upon DNA binding
To Be Published
3DSL
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BU of 3dsl by Molmil
The Three-dimensional Structure of Bothropasin, the Main Hemorrhagic Factor from Bothrops jararaca venom.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, FUROYL-LEUCINE, ...
Authors:Muniz, J.R.C, Ambrosio, A, Selistre-de-Araujo, H.S, Oliva, G, Garratt, R.C, Souza, D.H.F.
Deposit date:2008-07-13
Release date:2008-10-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The three-dimensional structure of bothropasin, the main hemorrhagic factor from Bothrops jararaca venom: Insights for a new classification of snake venom metalloprotease subgroups.
Toxicon, 52, 2008
5CHB
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BU of 5chb by Molmil
Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal
Descriptor: CADMIUM ION, CHLORIDE ION, SULFATE ION, ...
Authors:Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H.
Deposit date:2015-07-10
Release date:2015-07-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein
Angew.Chem.Int.Ed.Engl., 54, 2015
7NPD
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BU of 7npd by Molmil
Vibiro cholerae ParA2
Descriptor: Walker A-type ATPase
Authors:Parker, A.V, Bergeron, J.R.C.
Deposit date:2021-02-26
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of the bacterial DNA segregation ATPase filament reveals the conformational plasticity of ParA upon DNA binding.
Nat Commun, 12, 2021
1NYF
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BU of 1nyf by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, MINIMIZED AVERAGE (PROBMAP) STRUCTURE
Descriptor: FYN
Authors:Morton, C.J, Pugh, D.J.R, Campbell, I.D.
Deposit date:1996-04-22
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and peptide binding of the SH3 domain from human Fyn.
Structure, 4, 1996
5AIK
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BU of 5aik by Molmil
Human DYRK1A in complex with LDN-211898
Descriptor: 4-(7-METHOXY-1-(TRIFLUOROMETHYL)-9H-PYRIDO[3,4-B]INDOL-9-yl)butan-1-amine, DYRK1A DUAL-SPECIFICITY TYROSINE-PHOSPHORYLATION REGULATED KINASE 1A, PHOSPHATE ION
Authors:Elkins, J.M, Soundararajan, M, Muniz, J.R.C, Cuny, G, Higgins, J, Edwards, A, Bountra, C, Knapp, S.
Deposit date:2015-02-15
Release date:2015-02-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dyrk1A with Ldn-211898
To be published

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