Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 5677 results

5H8T
DownloadVisualize
BU of 5h8t by Molmil
Crystal structure of human cellular retinol binding protein 1 in complex with all-trans-retinol
Descriptor: RETINOL, Retinol-binding protein 1
Authors:Golczak, M, Arne, J.M, Silvaroli, J.A, Kiser, P.D, Banerjee, S.
Deposit date:2015-12-23
Release date:2016-03-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Ligand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures.
J.Biol.Chem., 291, 2016
2N08
DownloadVisualize
BU of 2n08 by Molmil
NMR structure of a short hydrophobic 11mer peptide in 25 mM SDS solution
Descriptor: Short hydrophobic peptide with cyclic constraints
Authors:Hoang, H.N, Song, K, Hill, T.A, Derksen, D.R, Edmonds, D.J, Kok, W.M, Limberakis, C, Liras, S, Loria, P.M, Mascitti, V, Mathiowetz, A.M, Mitchell, J.M, Piotrowski, D.W, Price, D.A, Stanton, R.V, Suen, J.Y, Withka, J.M, Griffith, D.A, Fairlie, D.P.
Deposit date:2015-03-04
Release date:2015-04-15
Last modified:2015-05-27
Method:SOLUTION NMR
Cite:Short Hydrophobic Peptides with Cyclic Constraints Are Potent Glucagon-like Peptide-1 Receptor (GLP-1R) Agonists.
J.Med.Chem., 58, 2015
2N0I
DownloadVisualize
BU of 2n0i by Molmil
NMR solution structure for di-sulfide 11mer peptide
Descriptor: di-sulfide 11mer peptide
Authors:Hoang, H.N, Song, K, Hill, T.A, Derksen, D.R, Edmonds, D.J, Kok, W.M, Limberakis, C, Liras, S, Loria, P.M, Mascitti, V, Mathiowetz, A.M, Mitchell, J.M, Piotrowski, D.W, Price, D.A, Stanton, R.V, Suen, J.Y, Withka, J.M, Griffith, D.A, Fairlie, D.P.
Deposit date:2015-03-09
Release date:2015-04-15
Last modified:2024-04-03
Method:SOLUTION NMR
Cite:Short Hydrophobic Peptides with Cyclic Constraints Are Potent Glucagon-like Peptide-1 Receptor (GLP-1R) Agonists.
J.Med.Chem., 58, 2015
5H6H
DownloadVisualize
BU of 5h6h by Molmil
Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ribulose 3-Epimerase with Mn2+
Descriptor: MANGANESE (II) ION, PENTAETHYLENE GLYCOL, TETRAETHYLENE GLYCOL, ...
Authors:Cao, T.-P, Choi, J.M, Shin, S.M, Le, D.W, Lee, S.H.
Deposit date:2016-11-13
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.446 Å)
Cite:TM0416, a Hyperthermophilic Promiscuous Nonphosphorylated Sugar Isomerase, Catalyzes Various C5and C6Epimerization Reactions
Appl. Environ. Microbiol., 83, 2017
7TJK
DownloadVisualize
BU of 7tjk by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with docked Orc6 N-terminal domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2022-10-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TZ1
DownloadVisualize
BU of 7tz1 by Molmil
Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor
Authors:McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R.
Deposit date:2022-02-15
Release date:2022-07-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence.
Nat Commun, 13, 2022
8RFM
DownloadVisualize
BU of 8rfm by Molmil
Human NOQ1 enzyme in complex with NADH by serial crystallography
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H dehydrogenase [quinone] 1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Martin-Garcia, J.M, Grieco, A, Medina, M, Boneta, S, Pey, A.L.
Deposit date:2023-12-13
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural dynamics and functional cooperativity of human NQO1 by ambient temperature serial crystallography and simulations.
Protein Sci., 33, 2024
7JGS
DownloadVisualize
BU of 7jgs by Molmil
Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 2)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-19
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7SZ2
DownloadVisualize
BU of 7sz2 by Molmil
Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
Authors:Ayanath Kuttiyatveetil, J.R, Pascal, J.M.
Deposit date:2021-11-25
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose).
Cell Rep, 41, 2022
7JGR
DownloadVisualize
BU of 7jgr by Molmil
Structure of Drosophila ORC bound to DNA (84 bp) and Cdc6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-19
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7SZ3
DownloadVisualize
BU of 7sz3 by Molmil
Mouse PARP13/ZAP ZnF5-WWE1-WWE2 bound to ADPr
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, GLYCEROL, PHOSPHATE ION, ...
Authors:Ayanath Kuttiyatveetil, J.R, Pascal, J.M.
Deposit date:2021-11-25
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures and functional analysis of the ZnF5-WWE1-WWE2 region of PARP13/ZAP define a distinctive mode of engaging poly(ADP-ribose).
Cell Rep, 41, 2022
8RFN
DownloadVisualize
BU of 8rfn by Molmil
Human NOQ1 enzyme in its holo form by serial crystallography
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H dehydrogenase [quinone] 1
Authors:Martin-Garcia, J.M, Grieco, A, Medina, M, Boneta, S, Pey, A.L.
Deposit date:2023-12-13
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural dynamics and functional cooperativity of human NQO1 by ambient temperature serial crystallography and simulations.
Protein Sci., 33, 2024
5ISH
DownloadVisualize
BU of 5ish by Molmil
Crystal structure of mouse CARM1 in complex with inhibitor SA0765
Descriptor: 1,2-DIMETHOXYETHANE, 1,2-ETHANEDIOL, 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE, ...
Authors:Cura, V, Marechal, N, Mailliot, J, Troffer-Charlier, N, Hassenboehler, P, Wurtz, J.M, Bonnefond, L, Cavarelli, J.
Deposit date:2016-03-15
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.152 Å)
Cite:Crystal structure of mouse CARM1 in complex with inhibitor SA0765
To Be Published
6TCM
DownloadVisualize
BU of 6tcm by Molmil
Crystal structure of the omalizumab Fab - crystal form I
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, Omalizumab Fab, ...
Authors:Mitropoulou, A.N, Ceska, T, Beavil, A.J, Henry, A.J, McDonnell, J.M, Sutton, B.J, Davies, A.M.
Deposit date:2019-11-06
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering the Fab fragment of the anti-IgE omalizumab to prevent Fab crystallization and permit IgE-Fc complex crystallization.
Acta Crystallogr.,Sect.F, 76, 2020
6TCS
DownloadVisualize
BU of 6tcs by Molmil
Crystal structure of the omalizumab scFv
Descriptor: DI(HYDROXYETHYL)ETHER, Omalizumab scFv
Authors:Mitropoulou, A.N, Ceska, T, Beavil, A.J, Henry, A.J, McDonnell, J.M, Sutton, B.J, Davies, A.M.
Deposit date:2019-11-06
Release date:2020-03-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Engineering the Fab fragment of the anti-IgE omalizumab to prevent Fab crystallization and permit IgE-Fc complex crystallization.
Acta Crystallogr.,Sect.F, 76, 2020
7UXB
DownloadVisualize
BU of 7uxb by Molmil
Human triosephosphate isomerase mutant G122R
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Triosephosphate isomerase
Authors:Romero, J.M.
Deposit date:2022-05-05
Release date:2023-05-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human triosephosphate isomerase mutant G122R
To Be Published
7UXV
DownloadVisualize
BU of 7uxv by Molmil
human triosephosphate isomerase mutant G122R
Descriptor: 2-PHOSPHOGLYCOLIC ACID, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Romero, J.M.
Deposit date:2022-05-06
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:human triosephosphate isomerase mutant G122R
To Be Published
8UH2
DownloadVisualize
BU of 8uh2 by Molmil
Complex of C3b with the inhibitor albicin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Albicin, Complement C3 beta chain, ...
Authors:Andersen, J.F, Lei, H, Strayer, E, Ribeiro, J.M.
Deposit date:2023-10-06
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:The mechanism of a mosquito salivary inhibitor of the alternative C3 convertase is elucidated through structural analysis of its complex with C3bBb
To Be Published
7UAD
DownloadVisualize
BU of 7uad by Molmil
Crystal structure of human PTPN2 with inhibitor ABBV-CLS-484
Descriptor: 5-{(7R)-1-fluoro-3-hydroxy-7-[(3-methylbutyl)amino]-5,6,7,8-tetrahydronaphthalen-2-yl}-1lambda~6~,2,5-thiadiazolidine-1,1,3-trione, Tyrosine-protein phosphatase non-receptor type 2
Authors:Longenecker, K.L, Qiu, W, Sun, Q, Frost, J.M.
Deposit date:2022-03-12
Release date:2023-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.044 Å)
Cite:The PTPN2/PTPN1 inhibitor ABBV-CLS-484 unleashes potent anti-tumour immunity.
Nature, 622, 2023
6RVN
DownloadVisualize
BU of 6rvn by Molmil
aFtsz-GDP-Wat
Descriptor: CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE
Authors:Fernandez-Tornero, C, Andreu, J.M.
Deposit date:2019-05-31
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.242 Å)
Cite:Nucleotide-induced folding of cell division protein FtsZ from Staphylococcus aureus.
Febs J., 287, 2020
6RZ4
DownloadVisualize
BU of 6rz4 by Molmil
Crystal structure of cysteinyl leukotriene receptor 1 in complex with pranlukast
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Cysteinyl leukotriene receptor 1,Soluble cytochrome b562,Cysteinyl leukotriene receptor 1, OLEIC ACID, ...
Authors:Luginina, A, Gusach, A, Marin, E, Mishin, A, Brouillette, R, Popov, P, Shiryaeva, A, Besserer-Offroy, E, Longpre, J.M, Lyapina, E, Ishchenko, A, Patel, N, Polovinkin, V, Safronova, N, Bogorodskiy, A, Edelweiss, E, Liu, W, Batyuk, A, Gordeliy, V, Han, G.W, Sarret, P, Katritch, V, Borshchevskiy, V, Cherezov, V.
Deposit date:2019-06-12
Release date:2019-10-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based mechanism of cysteinyl leukotriene receptor inhibition by antiasthmatic drugs.
Sci Adv, 5, 2019
6RVP
DownloadVisualize
BU of 6rvp by Molmil
SaFtsz-GDP-MetPyr
Descriptor: 1-methylpyrrolidin-2-one, CALCIUM ION, Cell division protein FtsZ, ...
Authors:Fernandez-Tornero, C, Andreu, J.M.
Deposit date:2019-05-31
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Nucleotide-induced folding of cell division protein FtsZ from Staphylococcus aureus.
Febs J., 287, 2020
7UGW
DownloadVisualize
BU of 7ugw by Molmil
M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin
Descriptor: DNA (46-MER), DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Hauk, G, Imai, Y, Lewis, K, Berger, J.M.
Deposit date:2022-03-25
Release date:2022-08-17
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis.
Nat.Chem.Biol., 18, 2022
6RZ9
DownloadVisualize
BU of 6rz9 by Molmil
Crystal structure of the human cysteinyl leukotriene receptor 2 in complex with ONO-2770372
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2~{S})-8-[[4-[4-(5-fluoranyl-2-methyl-phenyl)butoxy]phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-butyl)-2,3-dih ydro-1,4-benzoxazine-2-carboxylic acid, CHOLESTEROL, ...
Authors:Gusach, A, Luginina, A, Marin, E, Brouillette, R.L, Besserer-Offroy, E, Longpre, J.M, Ishchenko, A, Popov, P, Fujimoto, T, Maruyama, T, Stauch, B, Ergasheva, M, Romanovskaya, D, Stepko, A, Kovalev, K, Shevtsov, M, Gordeliy, V, Han, G.W, Sarret, P, Katritch, V, Borshchevskiy, V, Mishin, A, Cherezov, V.
Deposit date:2019-06-12
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Structural basis of ligand selectivity and disease mutations in cysteinyl leukotriene receptors.
Nat Commun, 10, 2019
7KV9
DownloadVisualize
BU of 7kv9 by Molmil
Chimeric flavivirus between Binjari virus and West Nile (Kunjin) virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Matrix protein M, envelope protein E
Authors:Hardy, J.M, Venugopal, H.V, Newton, N.D, Watterson, D, Coulibaly, F.J.
Deposit date:2020-11-27
Release date:2020-12-23
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A unified route for flavivirus structures uncovers essential pocket factors conserved across pathogenic viruses.
Nat Commun, 12, 2021

227111

數據於2024-11-06公開中

PDB statisticsPDBj update infoContact PDBjnumon