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PDB: 2129 results

4J4Q
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Crystal structure of active conformation of GPCR opsin stabilized by octylglucoside
Descriptor: ACETATE ION, Guanine nucleotide-binding protein G(t) subunit alpha-1, PALMITIC ACID, ...
Authors:Park, J.H, Morizumi, T, Li, Y, Hong, J.E, Pai, E.F, Hofmann, K.P, Choe, H.W, Ernst, O.P.
Deposit date:2013-02-07
Release date:2013-10-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Opsin, a structural model for olfactory receptors?
Angew.Chem.Int.Ed.Engl., 52, 2013
5Y4I
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Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-03
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
3PGE
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BU of 3pge by Molmil
Structure of sumoylated PCNA
Descriptor: Proliferating cell nuclear antigen, SUMO-modified proliferating cell nuclear antigen
Authors:Freudenthal, B.D, Brogie, J.E, Gakhar, L, Washington, T.
Deposit date:2010-11-01
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of SUMO-Modified Proliferating Cell Nuclear Antigen.
J.Mol.Biol., 406, 2011
4J76
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Crystal Structure of a parasite tRNA synthetase, ligand-free
Descriptor: GLYCEROL, Tryptophanyl-tRNA synthetase
Authors:Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J.
Deposit date:2013-02-12
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design.
Mol.Biochem.Parasitol., 189, 2013
1DTO
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BU of 1dto by Molmil
CRYSTAL STRUCTURE OF THE COMPLETE TRANSACTIVATION DOMAIN OF E2 PROTEIN FROM THE HUMAN PAPILLOMAVIRUS TYPE 16
Descriptor: REGULATORY PROTEIN E2
Authors:Antson, A.A, Burns, J.E, Moroz, O.V, Scott, D.J, Sanders, C.M, Bronstein, I.B, Dodson, G.G, Wilson, K.S, Maitland, N.
Deposit date:2000-01-13
Release date:2000-02-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the intact transactivation domain of the human papillomavirus E2 protein.
Nature, 403, 2000
4J75
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Crystal Structure of a parasite tRNA synthetase, product-bound
Descriptor: GLYCEROL, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase
Authors:Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J.
Deposit date:2013-02-12
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design.
Mol.Biochem.Parasitol., 189, 2013
1RZU
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BU of 1rzu by Molmil
Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glycogen synthase 1
Authors:Buschiazzo, A, Guerin, M.E, Ugalde, J.E, Ugalde, R.A, Shepard, W, Alzari, P.M.
Deposit date:2003-12-29
Release date:2004-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation.
Embo J., 23, 2004
4JPR
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BU of 4jpr by Molmil
Structure of the ASLV fusion subunit core
Descriptor: ASLV fusion TM, CHLORIDE ION
Authors:Aydin, H, Smrke, B.M, Lee, J.E.
Deposit date:2013-03-19
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural characterization of a fusion glycoprotein from a retrovirus that undergoes a hybrid 2-step entry mechanism.
Faseb J., 27, 2013
4Z1M
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BU of 4z1m by Molmil
Bovine F1-ATPase inhibited by three copies of the inhibitor protein IF1 crystallised in the presence of thiophosphate.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
Authors:Bason, J.V, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2015-03-27
Release date:2015-05-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:How release of phosphate from mammalian F1-ATPase generates a rotary substep.
Proc.Natl.Acad.Sci.USA, 112, 2015
4K1E
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BU of 4k1e by Molmil
Atomic resolution crystal structures of Kallikrein-Related Peptidase 4 complexed with a modified SFTI inhibitor FCQR
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Kallikrein-4, LITHIUM ION, ...
Authors:Ilyichova, O.V, Swedberg, J.E, de Veer, S.J, Sit, K.C, Harris, J.M, Buckle, A.M.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics
Sci Rep, 6, 2016
4K0E
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X-ray crystal structure of a heavy metal efflux pump, crystal form II
Descriptor: Heavy metal cation tricomponent efflux pump ZneA(CzcA-like), ZINC ION
Authors:Pak, J.E, Ngonlong Ekende, E, Vandenbussche, G, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
Deposit date:2013-04-03
Release date:2013-10-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.713 Å)
Cite:Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter.
Proc.Natl.Acad.Sci.USA, 110, 2013
4Z34
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Crystal Structure of Human Lysophosphatidic Acid Receptor 1 in complex with ONO9780307
Descriptor: (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate, Lysophosphatidic acid receptor 1, Soluble cytochrome b562, ...
Authors:Chrencik, J.E, Roth, C.B, Terakado, M, Kurata, H, Omi, R, Kihara, Y, Warshaviak, D, Nakade, S, Asmar-Rovira, G, Mileni, M, Mizuno, H, Griffith, M.T, Rodgers, C, Han, G.W, Velasquez, J, Chun, J, Stevens, R.C, Hanson, M.A, GPCR Network (GPCR)
Deposit date:2015-03-30
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1.
Cell, 161, 2015
4KGA
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BU of 4kga by Molmil
Crystal structure of kallikrein-related peptidase 4
Descriptor: 1,2-ETHANEDIOL, Kallikrein-4, NICKEL (II) ION
Authors:Ilyichova, O.V, Swedberg, J.E, de Veer, S.J, Sit, K.C, Harris, J.M, Buckle, A.M.
Deposit date:2013-04-29
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics
Sci Rep, 6, 2016
4KGM
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BU of 4kgm by Molmil
Bacterial tRNA(HIS) Guanylyltransferase (Thg1)-Like Protein in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Hyde, S.J, Rao, B.S, Eckenroth, B.E, Jackman, J.E, Doublie, S.
Deposit date:2013-04-29
Release date:2013-08-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.361 Å)
Cite:Structural Studies of a Bacterial tRNA(HIS) Guanylyltransferase (Thg1)-Like Protein, with Nucleotide in the Activation and Nucleotidyl Transfer Sites.
Plos One, 8, 2013
4K0J
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BU of 4k0j by Molmil
X-ray crystal structure of a heavy metal efflux pump, crystal form I
Descriptor: Heavy metal cation tricomponent efflux pump ZneA(CzcA-like), ZINC ION
Authors:Pak, J.E, Stroud, R.M, Ngonlong Ekende, E, Vandenbussche, G, Center for Structures of Membrane Proteins (CSMP)
Deposit date:2013-04-04
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter.
Proc.Natl.Acad.Sci.USA, 110, 2013
2BO5
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BU of 2bo5 by Molmil
Bovine oligomycin sensitivity conferral protein N-terminal domain
Descriptor: ATP SYNTHASE OLIGOMYCIN SENSITIVITY CONFERRAL PROTEIN
Authors:Carbajo, R.J, Kellas, F.A, Runswick, M.J, Montgomery, M.G, Walker, J.E, Neuhaus, D.
Deposit date:2005-04-07
Release date:2005-08-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the F1-binding domain of the stator of bovine F1Fo-ATPase and how it binds an alpha-subunit.
J. Mol. Biol., 351, 2005
3Q9U
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BU of 3q9u by Molmil
In silico and in vitro co-evolution of a high affinity complementary protein-protein interface
Descriptor: COENZYME A, CoA binding protein, consensus ankyrin repeat
Authors:Karanicolas, J, Corn, J.E, Chen, I, Joachimiak, L.A, Dym, O, Chung, S, Albeck, S, Unger, T, Hu, W, Liu, G, Delbecq, S, Montelione, G.T, Spiegel, C, Liu, D, Baker, D, Israel Structural Proteomics Center (ISPC)
Deposit date:2011-01-10
Release date:2011-04-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A de novo protein binding pair by computational design and directed evolution.
Mol.Cell, 42, 2011
4KQQ
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BU of 4kqq by Molmil
CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH (5S)-Penicilloic Acid
Descriptor: (2S,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Nettleship, J.E, Stuart, D.I, Owens, R.J, Ren, J.
Deposit date:2013-05-15
Release date:2013-11-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binding of (5S)-Penicilloic Acid to Penicillin Binding Protein 3.
Acs Chem.Biol., 8, 2013
2C60
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BU of 2c60 by Molmil
crystal structure of human mitogen-activated protein kinase kinase kinase 3 isoform 2 phox domain at 1.25 A resolution
Descriptor: CALCIUM ION, GLYCEROL, HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 ISOFORM 2
Authors:Debreczeni, J.E, Salah, E, Papagrigoriou, E, Burgess, N, von Delft, F, Gileadi, O, Sundstrom, M, Edwards, A, Arrowsmith, C, Weigelt, J, Knapp, S.
Deposit date:2005-11-04
Release date:2005-11-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal Structure of Human Mitogen-Activated Protein Kinase Kinase Kinase 3 Isoform 2 Fox Domain at 1.25 A Resolution
To be Published
4ZC9
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BU of 4zc9 by Molmil
Crystal Structure of the BRD4a/DB-2-190 complex
Descriptor: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}butyl)acetamide, Bromodomain-containing protein 4
Authors:Seo, H.-S, DeAngelo, S, Bradner, J.E.
Deposit date:2015-04-15
Release date:2015-11-18
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.
Science, 348, 2015
3QPR
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BU of 3qpr by Molmil
HK97 Prohead I encapsidating inactive virally encoded protease
Descriptor: Major capsid protein
Authors:Huang, R.K, Khayat, R, Lee, K.K, Gertsman, I, Duda, R.L, Hendrix, R.W, Johnson, J.E.
Deposit date:2011-02-14
Release date:2011-03-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (5.2 Å)
Cite:The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.
J.Mol.Biol., 408, 2011
3QAX
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BU of 3qax by Molmil
Crystal structure analysis of the cpb0502
Descriptor: ARGININE, Probable ABC transporter arginine-binding protein ArtJ
Authors:Chang, J.E, Hwang, K.Y.
Deposit date:2011-01-12
Release date:2012-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the cpb0502
To be Published
5V6J
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BU of 5v6j by Molmil
Glycan binding protein Y3 from mushroom Coprinus comatus possesses anti-leukemic activity
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, TMV resistance protein Y3
Authors:Li, K, Zhang, P, Gang, Y, Xia, C, Polston, J.E, Li, G, Li, S, Lin, Z, Yang, L.-J, Bruner, S.D, Ding, Y.
Deposit date:2017-03-16
Release date:2017-08-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Cytotoxic protein from the mushroom Coprinus comatus possesses a unique mode for glycan binding and specificity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V6S
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BU of 5v6s by Molmil
Crystal structure of small molecule acrylamide 1 covalently bound to K-Ras G12C
Descriptor: 1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:McGregor, L.M, Jenkins, M, Kerwin, C, Burke, J.E, Shokat, K.M.
Deposit date:2017-03-17
Release date:2017-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Expanding the Scope of Electrophiles Capable of Targeting K-Ras Oncogenes.
Biochemistry, 56, 2017
5A07
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BU of 5a07 by Molmil
X-ray structure of the mannosyltransferase Ktr4p from S. cerevisiae in complex with GDP
Descriptor: ACETATE ION, GUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, ...
Authors:Possner, D.D.D, Guy, J.E.
Deposit date:2015-04-17
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Glycosyltransferase Ktr4P from Saccharomyces Cerevisiae
Plos One, 10, 2015

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