Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 6628 件

2JIY
DownloadVisualize
BU of 2jiy by Molmil
PHOTOSYNTHETIC REACTION CENTER MUTANT WITH ALA M149 REPLACED WITH TRP (CHAIN M, AM149W)
分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
著者Fyfe, P.K, Potter, J.A, Cheng, J, Williams, C.M, Watson, A.J, Jones, M.R.
登録日2007-07-03
公開日2007-09-04
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Responses to Cavity-Creating Mutations in an Integral Membrane Protein.
Biochemistry, 46, 2007
6YRD
DownloadVisualize
BU of 6yrd by Molmil
SFX structure of dye-type peroxidase DtpB in the ferryl state
分子名称: MAGNESIUM ION, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Lucic, M, Axford, D.A, Owen, R.L, Worrall, J.A.R, Hough, M.A.
登録日2020-04-20
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation.
Angew.Chem.Int.Ed.Engl., 59, 2020
6YPV
DownloadVisualize
BU of 6ypv by Molmil
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure using FT-SSX methods
分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase AlkB, FE (III) ION
著者Rabe, P, Beale, J.H, Lang, P.A, Dirr, A.S, Leissing, T.M, Butryn, A, Aller, P, Kamps, J.J.A.G, Axford, D, McDonough, M.A, Orville, A.M, Owen, R, Schofield, C.J.
登録日2020-04-16
公開日2020-09-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Anaerobic fixed-target serial crystallography.
Iucrj, 7, 2020
6T61
DownloadVisualize
BU of 6t61 by Molmil
A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8
分子名称: Gag polyprotein
著者Dick, R.A, Xu, C, Morado, D.R, Kravchuk, V, Ricana, C.L, Lyddon, T.D, Broad, A.M, Feathers, J.R, Johnson, M.C, Vogt, V.M, Perilla, J.R, Briggs, J.A.G, Schur, F.K.M.
登録日2019-10-17
公開日2020-01-15
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
Plos Pathog., 16, 2020
2K21
DownloadVisualize
BU of 2k21 by Molmil
NMR structure of human KCNE1 in LMPG micelles at pH 6.0 and 40 degree C
分子名称: Potassium voltage-gated channel subfamily E member
著者Kang, C, Tian, C, Sonnichsen, F.D, Smith, J.A, Meiler, J, George, A.L, Vanoye, C.G, Sanders, C.R, Kim, H.
登録日2008-03-19
公開日2008-12-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of KCNE1 and implications for how it modulates the KCNQ1 potassium channel.
Biochemistry, 47, 2008
2JVK
DownloadVisualize
BU of 2jvk by Molmil
NMR Solution Structure of the Hyper-Sporulation Response Regulator Spo0F Mutant L66A from Bacillus subtilis
分子名称: Sporulation initiation phosphotransferase F
著者Bobay, B.G, McLaughlin, P.D, Thompson, R.J, Hoch, J.A, Cavanagh, J.
登録日2007-09-20
公開日2008-02-05
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Covariance identifies dynamic residues at the interfaces in protein/protein complexes
To be Published
2JX0
DownloadVisualize
BU of 2jx0 by Molmil
The paxillin-binding domain (PBD) of G Protein Coupled Receptor (GPCR)-kinase (GRK) interacting protein 1 (GIT1)
分子名称: ARF GTPase-activating protein GIT1
著者Zhang, Z, Guibao, C.D, Simmerman, J.A, Zheng, J.
登録日2007-11-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献GIT1 paxillin-binding domain is a four-helix bundle, and it binds to both paxillin LD2 and LD4 motifs.
J.Biol.Chem., 283, 2008
1GON
DownloadVisualize
BU of 1gon by Molmil
b-glucosidase from Streptomyces sp
分子名称: BETA-GLUCOSIDASE, MERCURY (II) ION, SULFATE ION
著者Guasch, A, Perez-Pons, J.A, Vallmitjana, M, Querol, E, Coll, M.
登録日2001-10-22
公開日2002-11-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of a Family 1 Beta-Glucosidase from Streptomyces
To be Published
2JD5
DownloadVisualize
BU of 2jd5 by Molmil
Sky1p bound to Npl3p-derived substrate peptide
分子名称: MAGNESIUM ION, NUCLEOLAR PROTEIN 3, SERINE/THREONINE-PROTEIN KINASE SKY1, ...
著者Nolen, B, Lukasiewicz, R, Adams, J.A, Huang, D, Ghosh, G.
登録日2007-01-04
公開日2007-02-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Rgg Domain of Npl3P Recruits Sky1P Through Docking Interactions
J.Mol.Biol., 367, 2007
8RWY
DownloadVisualize
BU of 8rwy by Molmil
DtpB hexamer from Streptomyces lividans
分子名称: Dyp-type peroxidase family, PROTOPORPHYRIN IX CONTAINING FE
著者Worrall, J.A.R, Chaplin, A.K, Allport, T.
登録日2024-02-05
公開日2024-06-26
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献The oligomeric states of dye-decolorizing peroxidases from Streptomyces lividans and their implications for mechanism of substrate oxidation.
Protein Sci., 33, 2024
2JFA
DownloadVisualize
BU of 2jfa by Molmil
ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH AN AFFINITY-SELECTED COREPRESSOR PEPTIDE
分子名称: COREPRESSOR PEPTIDE, ESTROGEN RECEPTOR, RALOXIFENE, ...
著者Heldring, N, Pawson, T, McDonnell, D, Treuter, E, Gustafsson, J.A, Pike, A.C.W.
登録日2007-01-29
公開日2007-02-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural Insights Into Corepressor Recognition by Antagonist-Bound Estrogen Receptors.
J.Biol.Chem., 282, 2007
6YAI
DownloadVisualize
BU of 6yai by Molmil
Clathrin with bound beta2 appendage of AP2
分子名称: AP-2 complex subunit beta, Clathrin heavy chain, Clathrin light chain
著者Kovtun, O, Kane Dickson, V, Kelly, B.T, Owen, D, Briggs, J.A.G.
登録日2020-03-12
公開日2020-07-29
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (9.2 Å)
主引用文献Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv, 6, 2020
6Y12
DownloadVisualize
BU of 6y12 by Molmil
Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods
分子名称: (2S,3S)-3-HYDROXYARGININE, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (III) ION, ...
著者Rabe, P, Beale, J.H, Lang, P.A, Dirr, A.S, Leissing, T.M, Butryn, A, Aller, P, Kamps, J.J.A.G, Axford, D, McDonough, M.A, Orville, A.M, Owen, R, Schofield, C.J.
登録日2020-02-11
公開日2020-09-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Anaerobic fixed-target serial crystallography.
Iucrj, 7, 2020
6YRC
DownloadVisualize
BU of 6yrc by Molmil
Spectroscopically-validated structure of DtpB from Streptomyces lividans in the ferric state
分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, GLYCEROL, MAGNESIUM ION, ...
著者Lucic, M, Dworkowski, F.S.N, Worrall, J.A.R, Hough, M.A.
登録日2020-04-20
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation.
Angew.Chem.Int.Ed.Engl., 59, 2020
2MCO
DownloadVisualize
BU of 2mco by Molmil
Structural studies on dinuclear ruthenium(II) complexes that bind diastereoselectively to an anti-parallel folded human telomere sequence
分子名称: SODIUM ION, human telomere quadruplex, tetrakis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)(mu-tetrapyrido[3,2-a:2',3'-c:3'',2''-h:2''',3'''-j]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~13~,N~14~)diruthenium(4+) L enantiomer
著者Williamson, M.P, Wilson, T, Thomas, J.A, Felix, V, Costa, P.J.
登録日2013-08-22
公開日2013-10-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to an Antiparallel Folded Human Telomere Sequence.
J.Med.Chem., 56, 2013
6YR4
DownloadVisualize
BU of 6yr4 by Molmil
Dye-type peroxidase DtpB in the ferryl state: Spectroscopically Validated composite structure
分子名称: MAGNESIUM ION, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Lucic, M, Dworkowski, F.S.N, Worrall, J.A.R, Hough, M.A.
登録日2020-04-19
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in Fe IV =O Formation.
Angew.Chem.Int.Ed.Engl., 59, 2020
6Y0Q
DownloadVisualize
BU of 6y0q by Molmil
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe, AKG and methylated DNA under anaerobic environment using FT-SSX methods
分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase AlkB, FE (III) ION, ...
著者Rabe, P, Beale, J.H, Lang, P.A, Dirr, A.S, Leissing, T.M, Butryn, A, Aller, P, Kamps, J.J.A.G, Axford, D, McDonough, M.A, Orville, A.M, Owen, R, Schofield, C.J.
登録日2020-02-10
公開日2020-09-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Anaerobic fixed-target serial crystallography.
Iucrj, 7, 2020
6YAE
DownloadVisualize
BU of 6yae by Molmil
AP2 core in physiological buffer
分子名称: AP-2 complex subunit alpha, AP-2 complex subunit beta, AP-2 complex subunit mu, ...
著者Kane Dickson, V, Kovtun, O, Kelly, B.T, Owen, D.J, Briggs, J.A.G.
登録日2020-03-12
公開日2020-07-29
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of the AP2/clathrin coat on the membranes of clathrin-coated vesicles.
Sci Adv, 6, 2020
2JGX
DownloadVisualize
BU of 2jgx by Molmil
Structure of CCP module 7 of complement factor H - The AMD Not at risk varient (402Y)
分子名称: COMPLEMENT FACTOR H
著者Herbert, A.P, Deakin, J.A, Schmidt, C.Q, Blaum, B.S, Egan, C, Ferreira, V.P, Pangburn, M.K, Lyon, M, Uhrin, D, Barlow, P.N.
登録日2007-02-16
公開日2007-03-20
最終更新日2018-05-02
実験手法SOLUTION NMR
主引用文献Structure shows that a glycosaminoglycan and protein recognition site in factor H is perturbed by age-related macular degeneration-linked single nucleotide polymorphism.
J. Biol. Chem., 282, 2007
2JH6
DownloadVisualize
BU of 2jh6 by Molmil
Human Thrombin Hirugen Inhibitor complex
分子名称: 2-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}ETHANESULFONAMIDE, CALCIUM ION, HIRUDIN IIIA, ...
著者Senger, S, Chan, C, Convery, M.A, Hubbard, J.A, Young, R.J, Shah, G.P, Watson, N.S.
登録日2007-02-20
公開日2007-05-08
最終更新日2013-08-07
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design.
Bioorg.Med.Chem.Lett., 17, 2007
6T63
DownloadVisualize
BU of 6t63 by Molmil
A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH6
分子名称: Gag polyprotein
著者Dick, R.A, Xu, C, Morado, D.R, Kravchuk, V, Ricana, C.L, Lyddon, T.D, Broad, A.M, Feathers, J.R, Johnson, M.C, Vogt, V.M, Perilla, J.R, Briggs, J.A.G, Schur, F.K.M.
登録日2019-10-17
公開日2020-01-15
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
Plos Pathog., 16, 2020
4YQC
DownloadVisualize
BU of 4yqc by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
分子名称: 6-{[(1R,3R)-3-hydroxycyclopentyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
著者Elkins, P.A, Bonnette, W.G, Stuckey, J.A.
登録日2015-03-13
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
6TAP
DownloadVisualize
BU of 6tap by Molmil
Structure of the dArc1 capsid
分子名称: Activity-regulated cytoskeleton associated protein 1, ZINC ION
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
2JYD
DownloadVisualize
BU of 2jyd by Molmil
Structure of the fifth zinc finger of Myelin Transcription Factor 1
分子名称: F5 domain of Myelin transcription factor 1, ZINC ION
著者Gamsjaeger, R, Swanton, M.K, Kobus, F.J, Lehtomaki, E, Lowry, J.A, Kwan, A.H, Matthews, J.M, Mackay, J.P.
登録日2007-12-12
公開日2008-01-15
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and biophysical analysis of the DNA binding properties of myelin transcription factor 1.
J.Biol.Chem., 283, 2008
3QS3
DownloadVisualize
BU of 3qs3 by Molmil
Crystal structure of the biofilm forming subunit of the E. coli common pilus: donor strand complemented (DSC) EcpA
分子名称: CITRATE ANION, Fimbrillin matB homolog, EcpD
著者Garnett, J.A, Matthews, S.J.
登録日2011-02-19
公開日2012-02-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insights into the biogenesis and biofilm formation by the Escherichia coli common pilus.
Proc.Natl.Acad.Sci.USA, 109, 2012

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon