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PDB: 42550 results

1YOK
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crystal structure of human LRH-1 bound with TIF-2 peptide and phosphatidylglycerol
Descriptor: (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE, Nuclear receptor coactivator 2, Orphan nuclear receptor NR5A2
Authors:Krylova, I.N, Sablin, E.P, Moore, J, Xu, R.X, Waitt, G.M, MacKay, J.A, Juzumiene, D, Bynum, J.M, Madauss, K, Montana, V, Lebedeva, L, Suzawa, M, Williams, J.D, Williams, S.P, Guy, R.K, Thornton, J.W, Fletterick, R.J, Willson, T.M, Ingraham, H.A.
Deposit date:2005-01-27
Release date:2005-07-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1.
Cell(Cambridge,Mass.), 120, 2005
1YOX
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Structure of the conserved Protein of Unknown Function PA3696 from Pseudomonas aeruginosa
Descriptor: hypothetical protein PA3696
Authors:Walker, J.R, Xu, X, Gu, J, Joachimiak, A, Edwards, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-01-28
Release date:2005-04-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structure of the conserved hypothetical protein PA3696
To be Published
1YRL
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Escherichia coli ketol-acid reductoisomerase
Descriptor: Ketol-acid reductoisomerase, SULFATE ION
Authors:Tyagi, R, Duquerroy, S, Navaza, J, Guddat, L.W, Duggleby, R.G.
Deposit date:2005-02-04
Release date:2005-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of a bacterial class II ketol-acid reductoisomerase: domain conservation and evolution
Protein Sci., 14, 2005
1YSM
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NMR Structure of N-terminal domain (Residues 1-77) of Siah-Interacting Protein.
Descriptor: Calcyclin-binding protein
Authors:Bhattacharya, S, Lee, Y.T, Michowski, W, Jastrzebska, B, Filipek, A, Kuznicki, J, Chazin, W.J.
Deposit date:2005-02-08
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The Modular Structure of SIP Facilitates Its Role in Stabilizing Multiprotein Assemblies.
Biochemistry, 44, 2005
5DHP
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Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a novel inhibitor
Descriptor: 8-({2-oxo-2-[(2-phenylethyl)amino]ethyl}sulfanyl)adenosine, CITRIC ACID, GLYCEROL, ...
Authors:Gelin, M, Paoletti, J, Assairi, L, Huteau, V, Pochet, S, Labesse, G.
Deposit date:2015-08-31
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:8-Thioalkyl-adenosine derivatives inhibit Listeria monocytogenes NAD kinase through a novel binding mode.
Eur.J.Med.Chem., 124, 2016
4RHN
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HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN (HINT) FROM RABBIT COMPLEXED WITH ADENOSINE
Descriptor: HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN, alpha-D-ribofuranose
Authors:Brenner, C, Garrison, P, Gilmour, J, Peisach, D, Ringe, D, Petsko, G.A, Lowenstein, J.M.
Deposit date:1997-02-26
Release date:1997-06-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of HINT demonstrate that histidine triad proteins are GalT-related nucleotide-binding proteins.
Nat.Struct.Biol., 4, 1997
1YOU
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Crystal structure of the catalytic domain of MMP-13 complexed with a potent pyrimidinetrione inhibitor
Descriptor: 5-(2-ETHOXYETHYL)-5-[4-(4-FLUOROPHENOXY)PHENOXY]PYRIMIDINE-2,4,6(1H,3H,5H)-TRIONE, CALCIUM ION, Collagenase 3, ...
Authors:Pandit, J.
Deposit date:2005-01-28
Release date:2005-03-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent pyrimidinetrione-based inhibitors of MMP-13 with enhanced selectivity over MMP-14.
Bioorg.Med.Chem.Lett., 15, 2005
1YP9
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Trypsin Inhibitor Complex
Descriptor: (1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YLMETHYL)-1-BENZYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROZILIN-4-YL-BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Fokkens, J, Obst-Sander, U, Heine, A, Diederich, F, Klebe, G.
Deposit date:2005-01-31
Release date:2006-01-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates
Angew.Chem.Int.Ed.Engl., 45, 2006
4RHP
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Crystal structure of human COQ9 in complex with a phospholipid, Northeast Structural Genomics Consortium Target HR5043
Descriptor: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Ubiquinone biosynthesis protein COQ9, mitochondrial
Authors:Forouhar, F, Lew, S, Seetharaman, J, Wang, H, Lee, D, Kogan, S, Maglaqui, M, Xiao, R, Everett, J.K, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG), Mitochondrial Protein Partnership (MPP)
Deposit date:2014-10-02
Release date:2014-10-22
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis.
Proc.Natl.Acad.Sci.USA, 111, 2014
1YPJ
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Thrombin Inhibitor Complex
Descriptor: (1R,3AS,4R,8AS,8BR)-4-{5-(PHENYL[1,3]DIOXOL-5-YLMETHYL)-4-ETHYL-2,3,3-TRIMETHYL-6-OXO-OCTAHYDRO-PYRROLO[3,4-C]PYRROL-1-YL}-BENZAMIDINE, Hirudin, Thrombin heavy chain, ...
Authors:Fokkens, J, Obst-Sander, U, Heine, A, Diederich, F, Klebe, G.
Deposit date:2005-01-31
Release date:2006-01-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates
Angew.Chem.Int.Ed.Engl., 45, 2006
8IRL
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Apo state of Arabidopsis AZG1 at pH 7.4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adenine/guanine permease AZG1
Authors:Xu, L, Guo, J.
Deposit date:2023-03-19
Release date:2024-01-17
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structures and mechanisms of the Arabidopsis cytokinin transporter AZG1.
Nat.Plants, 10, 2024
8IRN
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6-BAP bound state of Arabidopsis AZG1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adenine/guanine permease AZG1, N-BENZYL-9H-PURIN-6-AMINE
Authors:Xu, L, Guo, J.
Deposit date:2023-03-19
Release date:2024-01-17
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structures and mechanisms of the Arabidopsis cytokinin transporter AZG1.
Nat.Plants, 10, 2024
8IRP
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kinetin bound state of Arabidopsis AZG1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adenine/guanine permease AZG1, N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE
Authors:Xu, L, Guo, J.
Deposit date:2023-03-19
Release date:2024-01-17
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures and mechanisms of the Arabidopsis cytokinin transporter AZG1.
Nat.Plants, 10, 2024
8IRM
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Endogenous substrate adenine bound state of Arabidopsis AZG1 at pH 5.5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Adenine/guanine permease AZG1
Authors:Xu, L, Guo, J.
Deposit date:2023-03-19
Release date:2024-01-17
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structures and mechanisms of the Arabidopsis cytokinin transporter AZG1.
Nat.Plants, 10, 2024
4RJV
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Crystal Structure of a De Novo Designed Ferredoxin Fold, Northeast Structural Genomics Consortium (NESG) Target OR461
Descriptor: OR461
Authors:O'Connell, P.T, Lin, Y.-R, Guan, R, Koga, N, Koga, R, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-10-09
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.523 Å)
Cite:Northeast Structural Genomics Consortium Target OR461
To be published
1YRX
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Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides
Descriptor: FLAVIN MONONUCLEOTIDE, N-DODECYL-N,N-DIMETHYLGLYCINATE, hypothetical protein Rsph03001874
Authors:Anderson, S, Dragnea, V, Masuda, S, Ybe, J, Moffat, K, Bauer, C.
Deposit date:2005-02-05
Release date:2005-06-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a Novel Photoreceptor, the BLUF Domain of AppA from Rhodobacter sphaeroides
Biochemistry, 44, 2005
8IRO
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trans-Zeatin bound state of Arabidopsis AZG1 at pH7.4
Descriptor: (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adenine/guanine permease AZG1
Authors:Xu, L, Guo, J.
Deposit date:2023-03-19
Release date:2024-01-17
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structures and mechanisms of the Arabidopsis cytokinin transporter AZG1.
Nat.Plants, 10, 2024
8J22
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Cryo-EM structure of FFAR2 complex bound with TUG-1375
Descriptor: (2R,4R)-2-(2-chlorophenyl)-3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]carbonyl-1,3-thiazolidine-4-carboxylic acid, Free fatty acid receptor 2, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Tai, L, Li, F, Sun, X, Tang, W, Wang, J.
Deposit date:2023-04-14
Release date:2024-01-24
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular recognition and activation mechanism of short-chain fatty acid receptors FFAR2/3.
Cell Res., 34, 2024
8J20
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Cryo-EM structure of FFAR3 bound with valeric acid and AR420626
Descriptor: (4R)-N-[2,5-bis(chloranyl)phenyl]-4-(furan-2-yl)-2-methyl-5-oxidanylidene-4,6,7,8-tetrahydro-1H-quinoline-3-carboxamide, Free fatty acid receptor 3, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Tai, L, Li, F, Sun, X, Tang, W, Wang, J.
Deposit date:2023-04-14
Release date:2024-01-24
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular recognition and activation mechanism of short-chain fatty acid receptors FFAR2/3.
Cell Res., 34, 2024
1A5E
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SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 18 STRUCTURES
Descriptor: TUMOR SUPPRESSOR P16INK4A
Authors:Byeon, I.-J.L, Li, J, Ericson, K, Selby, T.L, Tevelev, A, Kim, H.-J, O'Maille, P, Tsai, M.-D.
Deposit date:1998-02-13
Release date:1999-08-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Tumor suppressor p16INK4A: determination of solution structure and analyses of its interaction with cyclin-dependent kinase 4.
Mol.Cell, 1, 1998
8J24
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Cryo-EM structure of FFAR2 complex bound with acetic acid
Descriptor: ACETATE ION, Free fatty acid receptor 2, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Tai, L, Li, F, Tang, W, Sun, X, Wang, J.
Deposit date:2023-04-14
Release date:2024-01-24
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Molecular recognition and activation mechanism of short-chain fatty acid receptors FFAR2/3.
Cell Res., 34, 2024
1YPM
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X-ray crystal structure of thrombin inhibited by synthetic cyanopeptide analogue RA-1014
Descriptor: Hirudin, N-(4-NITROBENZOYL)-L-LEUCYL-N-(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)-L-PROLINAMIDE, Thrombin heavy chain, ...
Authors:Fokkens, J, Radau, G.
Deposit date:2005-01-31
Release date:2006-01-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design and X-ray crystal structures of human thrombin with synthetic cyanopeptide-analogues.
Pharmazie, 62, 2007
4RKM
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Wolinella succinogenes octaheme sulfite reductase MccA, form I
Descriptor: (R,R)-2,3-BUTANEDIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Hermann, B, Kern, M, La Pietra, L, Simon, J, Einsle, O.
Deposit date:2014-10-13
Release date:2015-02-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The octahaem MccA is a haem c-copper sulfite reductase.
Nature, 520, 2015
1YRH
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Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN
Descriptor: FLAVIN MONONUCLEOTIDE, trp repressor binding protein WrbA
Authors:Gorman, J, Shapiro, L, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2005-02-03
Release date:2005-02-15
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Crystal structures of the tryptophan repressor binding protein WrbA and complexes with flavin mononucleotide.
Protein Sci., 14, 2005
1YU7
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Crystal Structure of the W64Y mutant of Villin Headpiece
Descriptor: Villin
Authors:Meng, J, Vardar, D, Wang, Y, Guo, H.C, Head, J.F, McKnight, C.J.
Deposit date:2005-02-12
Release date:2005-09-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution crystal structures of villin headpiece and mutants with reduced F-actin binding activity.
Biochemistry, 44, 2005

224004

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