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PDB: 42507 results

8PH1
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Crystal structure of the metallo-beta-lactamase VIM1 with 3708
Descriptor: 7-[(1~{S})-1-[(5~{R})-5-[(2~{R})-3-azanyl-2-methyl-propyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-(1~{H}-pyrazol-4-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3708
To Be Published
8PGI
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Crystal structure of the metallo-beta-lactamase VIM1 with 2984
Descriptor: 7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2984
To Be Published
8PH0
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Crystal structure of the metallo-beta-lactamase VIM1 with 3637
Descriptor: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(2-oxidanylidene-1,3-dihydroindol-5-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3637
To Be Published
6V2S
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BU of 6v2s by Molmil
Crystal Structure of chromodomain of MPP8 in complex with inhibitor UNC3866
Descriptor: M-phase phosphoprotein 8, UNC3866, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-11-25
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
Cell Chem Biol, 27, 2020
8PGJ
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BU of 8pgj by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2985
Descriptor: 7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, DIMETHYL SULFOXIDE, ...
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2985
To Be Published
8PG5
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Crystal structure of the metallo-beta-lactamase VIM1 with 2731
Descriptor: 3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2731
To Be Published
7T1T
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JAK2 JH2 IN COMPLEX WITH JAK292
Descriptor: (2S)-2-[({4-[(2-amino-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy]phenyl}carbamoyl)amino]-4-phenylbutanoic acid, GLYCEROL, Tyrosine-protein kinase JAK2
Authors:Ippolito, J.A, Henry, S, Krimmer, S.G, Schlessinger, J, Jorgensen, W.L.
Deposit date:2021-12-02
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Conversion of a False Virtual Screen Hit into Selective JAK2 JH2 Domain Binders Using Convergent Design Strategies
Acs Med.Chem.Lett., 13, 2022
2K37
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CsmA
Descriptor: Chlorosome Protein A
Authors:Pedersen, M, Dittmer, J, Underhaug, J, Miller, M, Nielsen, N.C.
Deposit date:2008-04-23
Release date:2008-09-02
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:The three-dimensional structure of CsmA: A small antenna protein from the green sulfur bacterium Chlorobium tepidum.
Febs Lett., 582, 2008
8PG7
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Crystal structure of the metallo-beta-lactamase VIM1 with 2755
Descriptor: 7-[(1~{S})-1-[3-(4-azanylbutyl)-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2755
To Be Published
8PGW
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Crystal structure of the metallo-beta-lactamase VIM1 with 3460
Descriptor: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(5-methoxy-6-oxidanyl-pyridin-3-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3460
To Be Published
8PJD
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BU of 8pjd by Molmil
Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 94-445
Descriptor: ACETATE ION, Protein arginine N-methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Cura, V, Troffer-Charlier, N, Marechal, N, Bonnefond, L, Cavarelli, J.
Deposit date:2023-06-23
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 94-445
To Be Published
8PM7
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transcription factor BARHL2 bound to TAATC DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
7E3S
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BU of 7e3s by Molmil
Crystal structure of TrmL from Shewanella oneidensis
Descriptor: tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Kim, J, Son, J.
Deposit date:2021-02-09
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of TrmL from Shewanella oneidensis
To be Published
8PMC
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BU of 8pmc by Molmil
transcription factor BARHL2 bound to TAATT DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
5UG3
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BU of 5ug3 by Molmil
NMR SOLUTION STRUCTURE OF ALPHA-CONOTOXIN GID MUTANT A10V
Descriptor: Alpha-conotoxin GID
Authors:Hussein, A.K, Leffler, A.E, Zebroski, H.A, Powell, S.R, Kuryatov, A, Filipenko, P, Gorson, J, Heizmann, A, Lyskov, S, Nicke, A, Lindstrom, J, Rudy, B, Bonneau, R, Holford, M, Poget, S.F.
Deposit date:2017-01-06
Release date:2017-09-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Discovery of peptide ligands through docking and virtual screening at nicotinic acetylcholine receptor homology models.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5UG5
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BU of 5ug5 by Molmil
NMR SOLUTION STRUCTURE OF THE ALPHA-CONOTOXIN GID MUTANT V13Y
Descriptor: Alpha-conotoxin GID
Authors:Hussein, A, Leffler, A.E, Kuryatov, A, Zebroski, H.A, Powell, S.R, Filipenko, P, Gorson, J, Heizmann, A, Lyskov, S, Nicke, A, Lindstrom, J, Rudy, B, Bonneau, R, Holford, M, Poget, S.F.
Deposit date:2017-01-06
Release date:2017-09-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Discovery of peptide ligands through docking and virtual screening at nicotinic acetylcholine receptor homology models.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8PUV
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BU of 8puv by Molmil
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, Protein prM
Authors:Fuzik, T, Plevka, P, Smerdova, L, Novacek, J.
Deposit date:2023-07-17
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The structure of immature tick-borne encephalitis virus supports the collapse model of flavivirus maturation.
Sci Adv, 10, 2024
7E3R
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BU of 7e3r by Molmil
Crystal structure of TrmL from Vibrio vulnificus
Descriptor: tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Kim, J, Son, J.
Deposit date:2021-02-09
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal structure of tRNA mehtyltransferase TrmL from Vibrio vulnificus
To be published
6V4P
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BU of 6v4p by Molmil
Structure of the integrin AlphaIIbBeta3-Abciximab complex
Descriptor: Abciximab, heavy chain, light chain, ...
Authors:Nesic, D, Zhang, Y, Spasic, A, Li, J, Provasi, D, Filizola, M, Walz, T, Coller, B.S.
Deposit date:2019-11-28
Release date:2020-02-05
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-Electron Microscopy Structure of the alpha IIb beta 3-Abciximab Complex.
Arterioscler Thromb Vasc Biol., 40, 2020
7E3T
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BU of 7e3t by Molmil
Crystal structure of TrmL from Mycoplasma capricolum
Descriptor: Putative tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Kim, J, Son, J.
Deposit date:2021-02-09
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of TrmL from Mycoplasma capricolum
To Be Published
6UVY
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BACE-1 in complex with compound #18
Descriptor: (1R,2R)-2-[(4aS,7aR)-2-amino-4a,5-dihydro-4H-furo[3,4-d][1,3]thiazin-7a(7H)-yl]-N-{[(1R,2R)-2-methylcyclopropyl]methyl}cyclopropane-1-carboxamide, Beta-secretase 1, GLYCEROL, ...
Authors:Hendle, J, Timm, D.E.
Deposit date:2019-11-04
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Preparation and biological evaluation of BACE1 inhibitors: Leveraging trans-cyclopropyl moieties as ligand efficient conformational constraints.
Bioorg.Med.Chem., 28, 2020
7AVK
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BU of 7avk by Molmil
Streptococcal High Identity Repeats in Tandem (SHIRT) domain 10 from cell surface protein SGO_0707
Descriptor: LPXTG cell wall surface protein, isothiocyanate
Authors:Degut, C, Gilburt, J, Whelan, F, Jenkins, H.T, Potts, J.R.
Deposit date:2020-11-05
Release date:2021-06-09
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (0.82 Å)
Cite:Periscope Proteins are variable-length regulators of bacterial cell surface interactions.
Proc.Natl.Acad.Sci.USA, 118, 2021
7SR8
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BU of 7sr8 by Molmil
Molecular mechanism of the the wake-promoting agent TAK-925
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Hypocretin receptor type 2, ...
Authors:Yin, J, Chapman, K, Lian, P, De Brabander, J.K, Rosenbaum, D.M.
Deposit date:2021-11-08
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular mechanism of the wake-promoting agent TAK-925.
Nat Commun, 13, 2022
3O0A
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BU of 3o0a by Molmil
Crystal structure of the wild type CP1 hydrolitic domain from Aquifex Aeolicus leucyl-trna
Descriptor: Leucyl-tRNA synthetase subunit alpha
Authors:Cura, V, Olieric, N, Wang, E.-D, Moras, D, Eriani, G, Cavarelli, J.
Deposit date:2010-07-19
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of the Wild Type and Two Mutants of the Cp1 Hydrolytic Domain from Aquifex Aeolicus Leucyl-tRNA Synthetase
To be Published
6UZ1
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Noncanonical binding of single-chain A6 TCR variant S3-4 in complex with Tax/HLA-A2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-2-microglobulin, LEU-LEU-PHE-GLY-TYR-PRO-VAL-TYR-VAL, ...
Authors:Ma, J, Singh, N.K.
Deposit date:2019-11-14
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:An Engineered T Cell Receptor Variant Realizes the Limits of Functional Binding Modes.
Biochemistry, 59, 2020

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PDB entries from 2024-08-14

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