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PDB: 42550 results

8GIT
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BU of 8git by Molmil
Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 1mM Mn2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MANGANESE (II) ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-03-14
Release date:2024-04-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
1A1D
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BU of 1a1d by Molmil
YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY
Descriptor: RNA POLYMERASE
Authors:Krapp, S, Kelly, G, Reischl, J, Weinzierl, R, Matthews, S.
Deposit date:1997-12-10
Release date:1999-03-02
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Eukaryotic RNA polymerase subunit RPB8 is a new relative of the OB family.
Nat.Struct.Biol., 5, 1998
1X9V
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BU of 1x9v by Molmil
Dimeric structure of the C-terminal domain of Vpr
Descriptor: VPR protein
Authors:Bourbigot, S, Beltz, H, Denis, J, Morellet, N, Roques, B.P, Mely, Y, Bouaziz, S.
Deposit date:2004-08-24
Release date:2005-06-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The C-terminal domain of the HIV-1 regulatory protein Vpr adopts an antiparallel dimeric structure in solution via its leucine-zipper-like domain
Biochem.J., 387, 2005
1AF8
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BU of 1af8 by Molmil
ACTINORHODIN POLYKETIDE SYNTHASE ACYL CARRIER PROTEIN FROM STREPTOMYCES COELICOLOR A3(2), NMR, 24 STRUCTURES
Descriptor: ACTINORHODIN POLYKETIDE SYNTHASE ACYL CARRIER PROTEIN
Authors:Crump, M.P, Crosby, J, Dempsey, C.E, Parkinson, J.A, Murray, M, Hopwood, D.A, Simpson, T.J.
Deposit date:1997-03-23
Release date:1997-09-26
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Solution structure of the actinorhodin polyketide synthase acyl carrier protein from Streptomyces coelicolor A3(2).
Biochemistry, 36, 1997
8G23
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BU of 8g23 by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound pppIpA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MAGNESIUM ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-02-03
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
1A8E
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BU of 1a8e by Molmil
HUMAN SERUM TRANSFERRIN, RECOMBINANT N-TERMINAL LOBE
Descriptor: CARBONATE ION, FE (III) ION, SERUM TRANSFERRIN
Authors:Macgillivray, R.T.A, Moore, S.A, Chen, J, Anderson, B.F, Baker, H, Luo, Y, Bewley, M, Smith, C.A, Murphy, M.E.P, Wang, Y, Mason, A.B, Woodworth, R.C, Brayer, G.D, Baker, E.N.
Deposit date:1998-03-24
Release date:1998-06-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Two high-resolution crystal structures of the recombinant N-lobe of human transferrin reveal a structural change implicated in iron release.
Biochemistry, 37, 1998
8GIM
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BU of 8gim by Molmil
Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MAGNESIUM ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-03-14
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
5F7O
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BU of 5f7o by Molmil
Crystal structure of Mutant Q289L of adenosine/Methylthioadenosine phosphorylase from Schistosoma mansoni in complex with Adenine
Descriptor: ADENINE, Methylthioadenosine phosphorylase, SULFATE ION
Authors:Torini, J.R, Brandao-Neto, J, DeMarco, R, Pereira, H.M.
Deposit date:2015-12-08
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8148 Å)
Cite:Crystal Structure of Schistosoma mansoni Adenosine Phosphorylase/5'-Methylthioadenosine Phosphorylase and Its Importance on Adenosine Salvage Pathway.
PLoS Negl Trop Dis, 10, 2016
5FKC
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BU of 5fkc by Molmil
Structure of D80A-fructofuranosidase from Xanthophyllomyces dendrorhous complexed with Raffinose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-FRUCTOFURANOSIDASE, ...
Authors:Ramirez-Escudero, M, Sanz-Aparicio, J.
Deposit date:2015-10-15
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity
J.Biol.Chem., 291, 2016
1ZNY
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BU of 1zny by Molmil
Crystal Structure Of Mycobacterium tuberculosis Guanylate Kinase In Complex With GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanylate kinase
Authors:Hible, G, Christova, P, Renault, L, Seclaman, E, Thompson, A, Girard, E, Munier-Lehmann, H, Cherfils, J.
Deposit date:2005-05-12
Release date:2005-11-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Unique GMP-binding site in Mycobacterium tuberculosis guanosine monophosphate kinase
Proteins, 62, 2006
5FKV
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BU of 5fkv by Molmil
cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon, tau complex)
Descriptor: DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, DNA POLYMERASE III SUBUNIT ALPHA, ...
Authors:Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
Deposit date:2015-10-20
Release date:2015-11-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.04 Å)
Cite:cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau.
Elife, 4, 2015
8GIP
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BU of 8gip by Molmil
Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.040mM Mn2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MAGNESIUM ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-03-14
Release date:2024-05-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
1Z4N
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BU of 1z4n by Molmil
Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate cocrystallized with Fluoride
Descriptor: 1-O-phosphono-alpha-D-galactopyranose, Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Tremblay, L.W, Zhang, G, Dai, J, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
1YUY
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BU of 1yuy by Molmil
HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE GENOTYPE 2a
Descriptor: RNA-Dependent RNA polymerase, SULFATE ION
Authors:Biswal, B.K, Cherney, M.M, Wang, M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Nicolas, O, Bedard, J, James, M.N.G.
Deposit date:2005-02-14
Release date:2005-03-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of the RNA dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors.
J.Biol.Chem., 280, 2005
8J0O
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BU of 8j0o by Molmil
cryo-EM structure of human EMC and VDAC
Descriptor: ER membrane protein complex subunit 1, ER membrane protein complex subunit 10, ER membrane protein complex subunit 2, ...
Authors:Li, M, Zhang, C, Wu, J, Lei, M.
Deposit date:2023-04-11
Release date:2024-04-03
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structural insights into human EMC and its interaction with VDAC.
Aging (Albany NY), 16, 2024
5FTX
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BU of 5ftx by Molmil
Structure of surface layer protein SbsC, domains 4-9
Descriptor: CALCIUM ION, SURFACE LAYER PROTEIN, ZINC ION
Authors:Dordic, A, Pavkov-Keller, T, Eder, M, Egelseer, E.M, Davis, K, Mills, D, Sleytr, U.B, Kuehlbrandt, W, Vonck, J, Keller, W.
Deposit date:2016-01-18
Release date:2017-02-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structure of Surface Layer Protein Sbsc
To be Published
8J1K
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BU of 8j1k by Molmil
co-crystal structure of non-carboxylic acid inhibitor with PHD2
Descriptor: Egl nine homolog 1, MANGANESE (II) ION, N-[(6-cyanopyridin-3-yl)methyl]-5-oxidanyl-2-[(3R)-3-oxidanylpyrrolidin-1-yl]-1,7-naphthyridine-6-carboxamide
Authors:Xu, J, Fu, Y, Ding, X, Meng, Q, Wang, L, Zhang, M, Ding, X, Ren, F, Zhavoronkov, A.
Deposit date:2023-04-13
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.451 Å)
Cite:co-crystal structure of non-carboxylic acid inhibitor with PHD2
To Be Published
5FX3
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BU of 5fx3 by Molmil
Breaking down the wall: mutation of the tyrosine gate of the universal Escherichia coli fimbrial adhesin FimH
Descriptor: FimH, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
Authors:Bouckaert, J.
Deposit date:2016-02-22
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding.
IUCrJ, 4, 2017
1YYO
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BU of 1yyo by Molmil
Crystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom Resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III
Authors:Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YZ1
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BU of 1yz1 by Molmil
Crystal structure of human translationally controlled tumour associated protein
Descriptor: Translationally controlled tumor protein
Authors:Cavarelli, J, Moras, D, Amson, R, Telerman, A.
Deposit date:2005-02-26
Release date:2006-05-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:TCTP protects from apoptotic cell death by antagonizing bax function
Cell Death Differ., 15, 2008
1YV2
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BU of 1yv2 by Molmil
Hepatitis C virus NS5B RNA-dependent RNA Polymerase genotype 2a
Descriptor: GLYCEROL, RNA dependent RNA polymerase, SULFATE ION
Authors:Biswal, B.K, Cherney, M.M, Wang, M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Nicolas, O, Bedard, J, James, M.N.G.
Deposit date:2005-02-14
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structures of the RNA-dependent RNA Polymerase Genotype 2a of Hepatitis C Virus Reveal Two Conformations and Suggest Mechanisms of Inhibition by Non-nucleoside Inhibitors
J.Biol.Chem., 280, 2005
5FYW
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BU of 5fyw by Molmil
Transcription initiation complex structures elucidate DNA opening (OC)
Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P.
Deposit date:2016-03-10
Release date:2016-05-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Transcription Initiation Complex Structures Elucidate DNA Opening
Nature, 533, 2016
4QQG
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BU of 4qqg by Molmil
Crystal structure of an N-terminal HTATIP fragment
Descriptor: Histone acetyltransferase KAT5, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Wernimont, A.K, Dobrovetsky, E, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and histone binding studies of the chromo barrel domain of TIP60.
FEBS Lett., 592, 2018
8JHH
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BU of 8jhh by Molmil
Glycoside hydrolase family 55 endo-beta-1,3-glucanase from Microdochium nivale
Descriptor: GLYCEROL, MnLam55A
Authors:Ota, T, Saburi, W, Yamashita, K, Tagami, T, Yu, J, Komba, S, Jewell, L.E, Hsiang, T, Imai, R, Yao, M, Mori, H.
Deposit date:2023-05-23
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular mechanism for endo-type action of glycoside hydrolase family 55 endo-beta-1,3-glucanase on beta 1-3/1-6-glucan.
J.Biol.Chem., 299, 2023
8JIH
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human telomere two-quartet G-quadruplex at pH 5.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023

224004

數據於2024-08-21公開中

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