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PDB: 42550 results

2UXY
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Aliphatic amidase
Descriptor: ALIPHATIC AMIDASE, SULFATE ION
Authors:Andrade, J, KArmali, A, Carrondo, M.A, Frazao, C.
Deposit date:2007-04-02
Release date:2007-04-17
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure of Amidase from Pseudomonas Aeruginosa Showing a Trapped Acyl Transfer Reaction Intermediate State.
J.Biol.Chem., 282, 2007
6H2B
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Structure of the Macrobrachium rosenbergii Nodavirus
Descriptor: CALCIUM ION, Capsid protein
Authors:Ho, K.H, Gabrielsen, M, Beh, P.L, Kueh, C.L, Thong, Q.X, Streetley, J, Tan, W.S, Bhella, D.
Deposit date:2018-07-13
Release date:2018-10-31
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
PLoS Biol., 16, 2018
2VBL
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Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers
Descriptor: 5'-D(*DA*DA*DA*DA*DG*DG*DC*DA*DG*DAP)-3', 5'-D(*DA*DG*DG*DA*DT*DC*DC*DT*DA*DAP)-3', 5'-D(*DT*DC*DT*DG*DC*DC*DT*DT*DT*DT*DT*DT *DGP*DAP)-3', ...
Authors:Redondo, P, Prieto, J, Munoz, I.G, Alibes, A, Stricher, F, Serrano, L, Arnould, S, Perez, C, Cabaniols, J.P, Duchateau, P, Paques, F, Blanco, F.J, Montoya, G.
Deposit date:2007-09-14
Release date:2008-10-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
Nature, 456, 2008
2V00
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X-ray crystal structure of endothiapepsin complexed with compound 1
Descriptor: 2-AMINO-6-(2-PHENYLETHYL)PYRIMIDIN-4(3H)-ONE, ACETATE ION, ENDOTHIAPEPSIN, ...
Authors:Geschwindner, S, Olsson, L.L, Deinum, J, Albert, J.S, Edwards, P.D, De Beer, T, Folmer, R.H.A.
Deposit date:2007-05-03
Release date:2007-12-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of a Novel Warhead Against Beta-Secretase Through Fragment-Based Lead Generation.
J.Med.Chem., 50, 2007
6GH2
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Paenibacillus sp. YM1 laminaribiose phosphorylase with alpha-glc-1-phosphate bound
Descriptor: 1,2-ETHANEDIOL, 1-O-phosphono-alpha-D-glucopyranose, CHLORIDE ION, ...
Authors:Kuhaudomlarp, S, Walpole, S, Stevenson, C.E.M, Nepogodiev, S.A, Lawson, D.M, Angulo, J, Field, R.A.
Deposit date:2018-05-04
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Unravelling the Specificity of Laminaribiose Phosphorylase from Paenibacillus sp. YM-1 towards Donor Substrates Glucose/Mannose 1-Phosphate by Using X-ray Crystallography and Saturation Transfer Difference NMR Spectroscopy.
Chembiochem, 20, 2019
5LAN
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Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. Third data set (0.93 MGy)
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C
Authors:Castellvi, A, Juanhuix, J.
Deposit date:2016-06-14
Release date:2017-08-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Uridine as a new scavenger for synchrotron-based structural biology techniques.
J Synchrotron Radiat, 24, 2017
5L8F
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Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A, E62A, H65A.
Descriptor: MAGNESIUM ION, Rru_A0973, TRIETHYLENE GLYCOL
Authors:He, D, Hughes, S, Vanden-Hehir, S, Georgiev, A, Altenbach, K, Tarrant, E, Mackay, C.L, Waldron, K.J, Clarke, D.J, Marles-Wright, J.
Deposit date:2016-06-07
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.247 Å)
Cite:Crystal structure of Rhodospirillum rubrum Rru_A0973 mutant E32A, E62A, H65A.
To be published
6GN6
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Alpha-L-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus
Descriptor: Alpha-L-fucosidase, DI(HYDROXYETHYL)ETHER, HEXAETHYLENE GLYCOL, ...
Authors:Kovalova, T, Koval, T, Lipovova, P, Dohnalek, J.
Deposit date:2018-05-30
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Active site complementation and hexameric arrangement in the GH family 29; a structure-function study of alpha-l-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus.
Glycobiology, 29, 2019
6GVQ
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DNA-bound pRN1 helix bundle domain with ATP and magnesium in the interaction buffer
Descriptor: DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), functional pRN1 primase
Authors:Boudet, J, Lipps, G, Allain, F.H.-T.
Deposit date:2018-06-21
Release date:2018-12-26
Last modified:2024-07-03
Method:SOLUTION NMR
Cite:A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.
Cell, 176, 2019
1DQ8
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COMPLEX OF THE CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE WITH HMG AND COA
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 3-HYDROXY-3-METHYL-GLUTARIC ACID, COENZYME A, ...
Authors:Istvan, E.S, Palnitkar, M, Buchanan, S.K, Deisenhofer, J.
Deposit date:1999-12-30
Release date:2000-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the catalytic portion of human HMG-CoA reductase: insights into regulation of activity and catalysis.
EMBO J., 19, 2000
1HCM
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Cytochrome cd1 Nitrite Reductase, oxidised from from tetragonal crystals
Descriptor: CYTOCHROME CD1 NITRITE REDUCTASE, HEME C, HEME D, ...
Authors:Sjogren, T, Hajdu, J.
Deposit date:2001-05-05
Release date:2001-08-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of an Alternative Form of Paracoccus Pantotrophus Cytochrome Cd1 Nitrite Reductase
J.Biol.Chem., 276, 2001
2MD9
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BU of 2md9 by Molmil
Solution Structure of an Active Site Mutant Pepitdyl Carrier Protein
Descriptor: Tyrocidine synthase 3
Authors:Tufar, P, Rahighi, S, Kraas, F.I, Kirchner, D.K, Loehr, F, Henrich, E, Koepke, J, Dikic, I, Guentert, P, Marahiel, M.A, Doetsch, V.
Deposit date:2013-09-06
Release date:2014-04-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Crystal Structure of a PCP/Sfp Complex Reveals the Structural Basis for Carrier Protein Posttranslational Modification.
Chem.Biol., 21, 2014
2V0B
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BU of 2v0b by Molmil
SAD Structure solution porcine pancreatic elastase from a Selenate derivative
Descriptor: CALCIUM ION, ELASTASE-1, SELENATE ION
Authors:Jakoncic, J, Stojanoff, V.
Deposit date:2007-05-11
Release date:2008-06-03
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Substitution of Sulfate in Crystallization Solution to Improve Phases
To be Published
5KXJ
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BU of 5kxj by Molmil
Crystal Structure of L-Aspartate Oxidase from Salmonella typhimurium in the Complex with Substrate L-Aspartate
Descriptor: 1,2-ETHANEDIOL, ASPARTIC ACID, GLYCEROL, ...
Authors:Kim, Y, Osipiuk, J, Mulligan, R, Makowska-Grzyska, M, Maltseva, N, Shatsman, S, Gu, M, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-07-20
Release date:2016-08-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal Structure of L-Aspartate Oxidase from Salmonella typhimurium in the Complex with Substrate L-Aspartate
To Be Published
1DSG
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BU of 1dsg by Molmil
CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 5, ROOM TEMPERATURE.
Descriptor: CYTOCHROME C PEROXIDASE, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hirst, J, Wilcox, S.K, Williams, P.A, McRee, D.E, Goodin, D.B.
Deposit date:2000-01-07
Release date:2001-03-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Replacement of the axial histidine ligand with imidazole in cytochrome c peroxidase. 1. Effects on structure.
Biochemistry, 40, 2001
2V3N
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Crystallographic analysis of upper axial ligand substitutions in cobalamin bound to transcobalamin
Descriptor: CHLORIDE ION, COBALAMIN, CYANIDE ION, ...
Authors:Wuerges, J, Geremia, S, Randaccio, L.
Deposit date:2007-06-19
Release date:2007-10-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Vitamin B12 Transport Proteins: Crystallographic Analysis of Beta-Axial Ligand Substitutions in Cobalamin Bound to Transcobalamin.
Iubmb Life, 59, 2007
2VCQ
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BU of 2vcq by Molmil
Complex structure of prostaglandin D2 synthase at 1.95A.
Descriptor: 3-phenyl-5-(1H-pyrazol-3-yl)isoxazole, GLUTATHIONE, GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE
Authors:Hohwy, M, Spadola, L, Lundquist, B, von Wachenfeldt, K, Persdotter, S, Hawtin, P, Dahmen, J, Groth-Clausen, I, Folmer, R.H.A, Edman, K.
Deposit date:2007-09-26
Release date:2008-04-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design.
J.Med.Chem., 51, 2008
2V3V
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A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, IRON/SULFUR CLUSTER, MOLYBDENUM ATOM, ...
Authors:Najmudin, S, Gonzalez, P.J, Trincao, J, Coelho, C, Mukhopadhyay, A, Romao, C.C, Moura, I, Moura, J.J, Brondino, C.D, Romao, M.J.
Deposit date:2007-06-22
Release date:2008-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Periplasmic Nitrate Reductase Revisited: A Sulfur Atom Completes the Sixth Coordination of the Catalytic Molybdenum.
J.Biol.Inorg.Chem., 13, 2008
2UWB
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Crystal structure of the Nasturtium seedling mutant xyloglucanase isoform NXG1-delta-YNIIG
Descriptor: CELLULASE
Authors:Baumann, M.J, Eklof, J, Michel, G, Kallasa, A, Teeri, T.T, Brumer, H, Czjzek, M.
Deposit date:2007-03-20
Release date:2007-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Evidence for the Evolution of Xyloglucanase Activity from Xyloglucan Endo-Transglycosylases: Biological Implications for Cell Wall Metabolism.
Plant Cell, 19, 2007
2UXM
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BU of 2uxm by Molmil
X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 10 in the charge-separated state, 2nd dataset
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Koepke, J, Diehm, R, Fritzsch, G.
Deposit date:2007-03-28
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ph Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter Sphaeroides in the Neutral and Charge Separated States.
J.Mol.Biol., 371, 2007
2UX3
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BU of 2ux3 by Molmil
X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 9 in the neutral state
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Koepke, J, Diehm, R, Fritzsch, G.
Deposit date:2007-03-26
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ph Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter Sphaeroides in the Neutral and Charge Separated States.
J.Mol.Biol., 371, 2007
5L23
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BU of 5l23 by Molmil
Crystal structure of the complex between the N-terminal SH3 domain of CrkII and a proline-rich ligand
Descriptor: Adapter molecule crk, C3G derived peptide, DI(HYDROXYETHYL)ETHER
Authors:Bhatt, V.S, Krieger, I, Sacchettini, J, Cho, J.-H.
Deposit date:2016-07-30
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of the complex between the N-terminal SH3 domain of CrkII and a proline-rich ligand
To Be Published
2VAW
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BU of 2vaw by Molmil
FtsZ Pseudomonas aeruginosa GDP
Descriptor: CELL DIVISION PROTEIN FTSZ, GUANOSINE-5'-DIPHOSPHATE
Authors:Oliva, M.A, Lowe, J.
Deposit date:2007-09-04
Release date:2007-09-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Insights Into the Conformational Variability of Ftsz
J.Mol.Biol., 373, 2007
2UWU
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BU of 2uwu by Molmil
X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 6.5 in the neutral state, 2nd dataset
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Koepke, J, Diehm, R, Fritzsch, G.
Deposit date:2007-03-23
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Ph Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter Sphaeroides in the Neutral and Charge Separated States.
J.Mol.Biol., 371, 2007
5L3J
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ESCHERICHIA COLI DNA GYRASE B IN COMPLEX WITH BENZOTHIAZOLE-BASED INHIBITOR
Descriptor: 2-[[2-[[4,5-bis(bromanyl)-1~{H}-pyrrol-2-yl]carbonylamino]-1,3-benzothiazol-6-yl]amino]-2-oxidanylidene-ethanoic acid, DNA gyrase subunit B, IODIDE ION
Authors:Gjorgjieva, M, Tomasic, T, Barancokova, M, Katsamakas, S, Ilas, J, Montalvao, S, Tammella, P, Peterlin Masic, L, Kikelj, D.
Deposit date:2016-05-23
Release date:2016-08-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Discovery of Benzothiazole Scaffold-Based DNA Gyrase B Inhibitors.
J.Med.Chem., 59, 2016

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