2VCQ

Complex structure of prostaglandin D2 synthase at 1.95A.

Summary for 2VCQ

Related1V40 1IYH 1IYI
DescriptorGLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE, GLUTATHIONE, 3-phenyl-5-(1H-pyrazol-3-yl)isoxazole, ... (4 entities in total)
Functional Keywordsprostaglandin biosynthesis, fatty acid biosynthesis, prostaglandin d2 synthase, pgds, asthma, cytoplasm, isomerase, lipid synthesis
Biological sourceHOMO SAPIENS (HUMAN)
Cellular locationCytoplasm O60760
Total number of polymer chains4
Total molecular weight95346.27
Authors
Hohwy, M.,Spadola, L.,Lundquist, B.,von Wachenfeldt, K.,Persdotter, S.,Hawtin, P.,Dahmen, J.,Groth-Clausen, I.,Folmer, R.H.A.,Edman, K. (deposition date: 2007-09-26, release date: 2008-04-15, Last modification date: 2011-07-13)
Primary citation
Hohwy, M.,Spadola, L.,Lundquist, B.,Hawtin, P.,Dahmen, J.,Groth-Clausen, I.,Nilsson, E.,Persdotter, S.,Von Wachenfeldt, K.,Folmer, R.H.A.,Edman, K.
Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design.
J.Med.Chem., 51:2178-, 2008
PubMed: 18341273 (PDB entries with the same primary citation)
DOI: 10.1021/JM701509K
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.95 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers300.9%4.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

Molmil generated image of 2vcq
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Molmil generated image of 2vcq
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2vcq.pdb1.gz [72.93 KB])
Coordinate files for Biological unit (2vcq.pdb2.gz [69.92 KB])