Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 件

7Z6I
DownloadVisualize
BU of 7z6i by Molmil
Crystal structure of p38alpha C162S in complex with SB20358 and CAS 2094667-81-7 (behind catalytic site; Y35 in), P 21 21 21
分子名称: 4-[4-(4-fluorophenyl)-2-[4-[methyl(oxidanyl)-$l^{3}-sulfanyl]phenyl]-1~{H}-imidazol-5-yl]pyridine, Mitogen-activated protein kinase 14, N-(2-cyclobutyl-1H-1,3-benzodiazol-5-yl)benzenesulfonamide
著者Baginski, B, Pous, J, Gonzalez, L, Macias, M.J, Nebreda, A.R.
登録日2022-03-11
公開日2023-06-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Characterization of p38 alpha autophosphorylation inhibitors that target the non-canonical activation pathway.
Nat Commun, 14, 2023
8HWF
DownloadVisualize
BU of 8hwf by Molmil
Cryo-EM Structure of D5 ADP-ssDNA form
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
著者Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
登録日2022-12-29
公開日2024-01-10
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWC
DownloadVisualize
BU of 8hwc by Molmil
Cryo-EM Structure of D5 Apo
分子名称: Primase D5
著者Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
登録日2022-12-29
公開日2024-01-10
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWB
DownloadVisualize
BU of 8hwb by Molmil
D5 ATP-ADP-Apo-ssDNA IS2
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), ...
著者Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
登録日2022-12-29
公開日2024-01-10
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
8HWH
DownloadVisualize
BU of 8hwh by Molmil
Cryo-EM Structure of D5 Apo-ssDNA form
分子名称: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), Primase D5
著者Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
登録日2022-12-29
公開日2024-01-10
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
5IEM
DownloadVisualize
BU of 5iem by Molmil
NMR structure of the 5'-terminal hairpin of the 7SK snRNA
分子名称: 7SK snRNA
著者Bourbigot, S, Dock-Bregeon, A.C, Coutant, J, Kieffer, B, Lebars, I.
登録日2016-02-25
公開日2016-11-02
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution structure of the 5'-terminal hairpin of the 7SK small nuclear RNA.
RNA, 22, 2016
7YLO
DownloadVisualize
BU of 7ylo by Molmil
Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
分子名称: Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Cheng, J, Luo, Y, Zhu, J, Tan, R, Wang, N, Lebedev, A.A.
登録日2022-07-26
公開日2023-07-05
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
To Be Published
5I65
DownloadVisualize
BU of 5i65 by Molmil
Porcine reproductive and respiratory syndrome virus nonstructural protein 7 alpha (nsp7 alpha)
分子名称: Nonstructural proteins ORF1a
著者Chen, J, Xu, X.
登録日2016-02-16
公開日2017-02-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of porcine reproductive and respiratory syndrome virus nonstructural protein 7 alpha (nsp7 alpha)
To Be Published
7JP3
DownloadVisualize
BU of 7jp3 by Molmil
Des-B29,B30-insulin
分子名称: CHLORIDE ION, Insulin B chain,Insulin A chain, PHENOL, ...
著者Yoder, J, Weiss, M.A, DiMarchi, R, Zaykov, A.
登録日2020-08-07
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Des-B29,B30-insulin
To Be Published
5C5J
DownloadVisualize
BU of 5c5j by Molmil
Poymerase Nucleotide complex
分子名称: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
著者Nair, D.T, Kottur, J.
登録日2015-06-20
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics
Angew.Chem.Int.Ed.Engl., 55, 2016
1FA4
DownloadVisualize
BU of 1fa4 by Molmil
ELUCIDATION OF THE PARAMAGNETIC RELAXATION OF HETERONUCLEI AND PROTONS IN CU(II) PLASTOCYANIN FROM ANABAENA VARIABILIS
分子名称: COPPER (II) ION, PLASTOCYANIN
著者Ma, L, Jorgensen, A.M, Sorensen, G.O, Ulstrup, J, Led, J.J.
登録日2000-07-12
公開日2000-08-16
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Elucidation of the Paramagnetic R1 Relaxation of Heteronuclei and Protons in Cu(II) Plastocyanin from Anabaena Variabilis
J.Am.Chem.Soc., 122, 2000
5C2B
DownloadVisualize
BU of 5c2b by Molmil
anti-CXCL13 parental scFv - 3B4
分子名称: CHLORIDE ION, scFv 3B4
著者Tu, C, Bard, J, Mosyak, L.
登録日2015-06-15
公開日2015-11-04
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (1.4049 Å)
主引用文献Optimization of a scFv-based biotherapeutic by CDR side-chain clash repair
To Be Published
5C6W
DownloadVisualize
BU of 5c6w by Molmil
anti-CXCL13 scFv - E10
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Tu, C, Bard, J, Mosyak, L.
登録日2015-06-23
公開日2015-11-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Optimization of a scFv-based biotherapeutic by CDR side-chain clash repair
To Be Published
5C7H
DownloadVisualize
BU of 5c7h by Molmil
Crystal structure of aldo-keto reductase from Sinorhizobium meliloti 1021 in complex with NADPH
分子名称: Aldo-keto reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Gasiorowska, O.A, Shabalin, I.G, Handing, K.B, Seidel, R, Bonanno, J, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2015-06-24
公開日2015-07-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of aldo-keto reductase from Sinorhizobium meliloti 1021 in complex with NADPH
to be published
1FHE
DownloadVisualize
BU of 1fhe by Molmil
GLUTATHIONE TRANSFERASE (FH47) FROM FASCIOLA HEPATICA
分子名称: GLUTATHIONE, GLUTATHIONE TRANSFERASE
著者Rossjohn, J, Parker, M.W.
登録日1997-07-24
公開日1998-07-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallization, structural determination and analysis of a novel parasite vaccine candidate: Fasciola hepatica glutathione S-transferase.
J.Mol.Biol., 273, 1997
5C85
DownloadVisualize
BU of 5c85 by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with SEED1
分子名称: 6-bromo-3,4-dihydroquinoxalin-2(1H)-one, NITRATE ION, Peregrin
著者Zhu, J, Caflisch, A.
登録日2015-06-25
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions.
J.Med.Chem., 59, 2016
5BXI
DownloadVisualize
BU of 5bxi by Molmil
1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii with Tyrosine of Tag Bound to Active Site
分子名称: BICARBONATE ION, DI(HYDROXYETHYL)ETHER, Nucleoside diphosphate kinase
著者Minasov, G, Ruan, J, Ngo, H, Shuvalova, L, Dubrovska, I, Flores, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2015-06-09
公開日2015-06-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii .
Front Cell Infect Microbiol, 8, 2018
3A7T
DownloadVisualize
BU of 3a7t by Molmil
Crystal Structure of Trypsin complexed with 4-formylbenzimidamide
分子名称: 4-formylbenzenecarboximidamide, CALCIUM ION, Cationic trypsin, ...
著者Yamane, J, Yao, M, Tanaka, I.
登録日2009-10-05
公開日2010-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献In-Crystal Chemical Ligation for Drug Discovery
To be Published
1FHK
DownloadVisualize
BU of 1fhk by Molmil
NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI
分子名称: RNA (5'-R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3')
著者Morosyuk, S.V, Cunningham, P.R, SantaLucia Jr, J.
登録日2000-08-01
公開日2001-03-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure.
J.Mol.Biol., 307, 2001
3A83
DownloadVisualize
BU of 3a83 by Molmil
Crystal Structure of Trypsin complexed with pre-synthesized (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide
分子名称: (E)-4-((2-nicotinoylhydrazono)methyl)benzimidamide, CALCIUM ION, Cationic trypsin, ...
著者Yamane, J, Yao, M, Tanaka, I.
登録日2009-10-05
公開日2010-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献In-Crystal Chemical Ligation for Drug Discovery
To be Published
5BZ6
DownloadVisualize
BU of 5bz6 by Molmil
Crystal structure of the N-terminal domain single mutant (S92A) of the human mitochondrial calcium uniporter fused with T4 lysozyme
分子名称: Lysozyme,Calcium uniporter protein, mitochondrial, SULFATE ION
著者Lee, Y, Min, C.K, Kim, T.G, Song, H.K, Lim, Y, Kim, D, Shin, K, Kang, M, Kang, J.Y, Youn, H.-S, Lee, J.-G, An, J.Y, Park, K.R, Lim, J.J, Kim, J.H, Kim, J.H, Park, Z.Y, Kim, Y.-S, Wang, J, Kim, D.H, Eom, S.H.
登録日2015-06-11
公開日2015-09-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structure and function of the N-terminal domain of the human mitochondrial calcium uniporter.
Embo Rep., 16, 2015
1FI1
DownloadVisualize
BU of 1fi1 by Molmil
FhuA in complex with lipopolysaccharide and rifamycin CGP4832
分子名称: 3-HYDROXY-TETRADECANOIC ACID, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, DIPHOSPHATE, ...
著者Ferguson, A.D, Koedding, J, Boes, C, Walker, G, Coulton, J.W, Diederichs, K, Braun, V, Welte, W.
登録日2000-08-03
公開日2001-08-29
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Active transport of an antibiotic rifamycin derivative by the outer-membrane protein FhuA.
Structure, 9, 2001
5C2M
DownloadVisualize
BU of 5c2m by Molmil
The de novo evolutionary emergence of a symmetrical protein is shaped by folding constraints
分子名称: Predicted protein
著者Smock, R.G, Yadid, I, Dym, O, Clarke, J, Tawfik, D.S.
登録日2015-06-16
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献De Novo Evolutionary Emergence of a Symmetrical Protein Is Shaped by Folding Constraints.
Cell, 164, 2016
5IYA
DownloadVisualize
BU of 5iya by Molmil
Human core-PIC in the closed state
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
著者He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E.
登録日2016-03-24
公開日2016-05-18
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IYT
DownloadVisualize
BU of 5iyt by Molmil
Complex structure of EV-B93 main protease 3C with N-Ethyl 4-((1-cycloheptyl-1,2-dihydropyrazol-3-one-5-yl)-amino)-4-oxo-2Z-butenamide
分子名称: EV-B93 main protease 3C, N-Ethyl 4-((1-cycloheptyl-1,2-dihydropyrazol-3-one-5-yl)-amino)-4-oxo-butanamide
著者Kaczmarska, Z, Becker, D, Rademann, J, Coll, M.
登録日2016-03-24
公開日2016-10-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Irreversible inhibitors of the 3C protease of Coxsackie virus through templated assembly of protein-binding fragments.
Nat Commun, 7, 2016

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon