Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42254 件

7CV9
DownloadVisualize
BU of 7cv9 by Molmil
RNA methyltransferase METTL4
分子名称: GLYCEROL, Methyltransferase-like protein 2, S-ADENOSYL-L-HOMOCYSTEINE
著者Luo, Q, Ma, J.
登録日2020-08-25
公開日2021-09-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.455 Å)
主引用文献Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4
Nat Commun, 13, 2022
3F2G
DownloadVisualize
BU of 3f2g by Molmil
Crystal structure of MerB mutant C160S, the Organomercurial Lyase involved in a bacterial mercury resistance system
分子名称: Alkylmercury lyase
著者Lafrance-Vanasse, J, Lefebvre, M, Di Lello, P, Sygusch, J, Omichinski, J.G.
登録日2008-10-29
公開日2008-11-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.781 Å)
主引用文献Crystal Structures of the Organomercurial Lyase MerB in Its Free and Mercury-bound Forms: INSIGHTS INTO THE MECHANISM OF METHYLMERCURY DEGRADATION
J.Biol.Chem., 284, 2009
7M5D
DownloadVisualize
BU of 7m5d by Molmil
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Zhang, J.
登録日2021-03-23
公開日2022-10-19
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
To Be Published
3FHW
DownloadVisualize
BU of 3fhw by Molmil
Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.
分子名称: DI(HYDROXYETHYL)ETHER, Primosomal replication protein n, SODIUM ION
著者Kuzin, A.P, Neely, H, Seetharaman, J, Forouhar, F, Wang, D, Mao, L, Maglaqui, M, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2008-12-10
公開日2008-12-30
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.
To be Published
2RN1
DownloadVisualize
BU of 2rn1 by Molmil
Liquid crystal solution structure of the kissing complex formed by the apical loop of the HIV TAR RNA and a high affinity RNA aptamer optimized by SELEX
分子名称: RNA (5'-R(P*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3'), RNA (5'-R(P*GP*CP*UP*GP*GP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3')
著者Van Melckebeke, H, Devany, M, Di Primo, C, Beaurain, F, Toulme, J, Bryce, D.L, Boisbouvier, J.
登録日2007-12-05
公開日2008-09-23
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex
Proc.Natl.Acad.Sci.Usa, 105, 2008
7CVA
DownloadVisualize
BU of 7cva by Molmil
RNA methyltransferase METTL4
分子名称: Methyltransferase-like protein 2
著者Luo, Q, Ma, J.
登録日2020-08-25
公開日2021-09-01
最終更新日2022-10-12
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4
Nat Commun, 13, 2022
7MSS
DownloadVisualize
BU of 7mss by Molmil
Human E105Qa GTP-specific succinyl-CoA synthetase complexed with succinate, magnesium ion and CoA
分子名称: COENZYME A, GLYCEROL, MAGNESIUM ION, ...
著者Huang, J, Fraser, M.E.
登録日2021-05-12
公開日2022-10-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The structure of succinyl-CoA synthetase bound to the succinyl-phosphate intermediate clarifies the catalytic mechanism of ATP-citrate lyase
Acta Crystallogr.,Sect.F, 78, 2022
6S44
DownloadVisualize
BU of 6s44 by Molmil
Faba bean necrotic stunt virus (FBNSV)
分子名称: Capsid protein
著者Trapani, S, Lai Kee Him, J, Blanc, S, Bron, P.
登録日2019-06-26
公開日2020-07-15
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Structure-guided mutagenesis of the capsid protein indicates that a nanovirus requires assembled viral particles for systemic infection.
Plos Pathog., 19, 2023
7MSR
DownloadVisualize
BU of 7msr by Molmil
Human E105Qa GTP-specific succinyl-CoA synthetase complexed with succinyl-phosphate, magnesium ion and desulfo-coenzyme A
分子名称: 1,2-ETHANEDIOL, 4-oxo-4-(phosphonooxy)butanoic acid, DESULFO-COENZYME A, ...
著者Huang, J, Fraser, M.E.
登録日2021-05-12
公開日2022-10-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献The structure of succinyl-CoA synthetase bound to the succinyl-phosphate intermediate clarifies the catalytic mechanism of ATP-citrate lyase
Acta Crystallogr.,Sect.F, 78, 2022
4C0A
DownloadVisualize
BU of 4c0a by Molmil
Arf1(Delta1-17)in complex with BRAG2 Sec7-PH domain
分子名称: ADP-RIBOSYLATION FACTOR 1, GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE, IQ MOTIF AND SEC7 DOMAIN-CONTAINING PROTEIN 1
著者Aizel, K, Biou, V, Navaza, J, Duarte, L, Campanacci, V, Cherfils, J, Zeghouf, M.
登録日2013-08-01
公開日2013-09-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Integrated conformational and lipid-sensing regulation of endosomal ArfGEF BRAG2.
PLoS Biol., 11, 2013
1RZF
DownloadVisualize
BU of 1rzf by Molmil
Crystal structure of Human anti-HIV-1 GP120-reactive antibody E51
分子名称: Fab E51 heavy chain, Fab E51 light chain, GLYCEROL, ...
著者Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D.
登録日2003-12-24
公開日2004-02-03
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120
Proc.Natl.Acad.Sci.USA, 101, 2004
7CV7
DownloadVisualize
BU of 7cv7 by Molmil
RNA methyltransferase METTL4
分子名称: Methyltransferase-like protein 2, S-ADENOSYLMETHIONINE
著者Luo, Q, Ma, J.
登録日2020-08-25
公開日2021-09-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4
Nat Commun, 13, 2022
7CV6
DownloadVisualize
BU of 7cv6 by Molmil
RNA methyltransferase METTL4
分子名称: 2'-O-methyladenosine 5'-(dihydrogen phosphate), Methyltransferase-like protein 2, S-ADENOSYL-L-HOMOCYSTEINE
著者Luo, Q, Ma, J.
登録日2020-08-25
公開日2021-09-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4
Nat Commun, 13, 2022
7CV8
DownloadVisualize
BU of 7cv8 by Molmil
RNA methyltransferase METTL4
分子名称: GLYCEROL, Methyltransferase-like protein 2, SINEFUNGIN
著者Luo, Q, Ma, J.
登録日2020-08-25
公開日2021-09-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4
Nat Commun, 13, 2022
5Y59
DownloadVisualize
BU of 5y59 by Molmil
Crystal structure of Ku80 and Sir4
分子名称: ATP-dependent DNA helicase II subunit 2, SULFATE ION, Sir4p
著者Chen, H, Xue, J, Wu, J, Lei, M.
登録日2017-08-08
公開日2017-12-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Structural Insights into Yeast Telomerase Recruitment to Telomeres
Cell, 172, 2018
4BZ1
DownloadVisualize
BU of 4bz1 by Molmil
Structure of dengue virus EDIII in complex with Fab 3e31
分子名称: CHLORIDE ION, ENVELOPE PROTEIN, FAB 3E31 HEAVY CHAIN, ...
著者Li, J, Watterson, D, Chang, C.W, Li, X.Q, Ericsson, D.J, Qiu, L.W, Cai, J.P, Chen, J, Fry, S.R, Cooper, M.A, Che, X.Y, Young, P.R, Kobe, B.
登録日2013-07-23
公開日2014-08-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of Dengue Virus Ediii in Complex with Fab 3E31
To be Published
3O6Y
DownloadVisualize
BU of 3o6y by Molmil
Robust computational design, optimization, and structural characterization of retroaldol enzymes
分子名称: Retro-Aldolase, SULFATE ION
著者Althoff, E.A, Wang, L, Jiang, L, Moody, J, Bolduc, J, Lassila, J.K, Wang, Z.Z, Smith, M, Hari, S, Herschlag, D, Stoddard, B.L, Baker, D.
登録日2010-07-29
公開日2011-06-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design.
J.Mol.Biol., 415, 2012
7NFU
DownloadVisualize
BU of 7nfu by Molmil
Crystal structure of C-terminally truncated Geobacillus thermoleovorans nucleoid occlusion protein Noc
分子名称: GLYCEROL, Nucleoid occlusion protein, SULFATE ION
著者Jalal, A.S.B, Tran, N.T, Wu, L.J, Ramakrishnan, K, Rejzek, M, Stevenson, C.E.M, Lawson, D.M, Errington, J, Le, T.B.K.
登録日2021-02-07
公開日2021-02-17
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献CTP regulates membrane-binding activity of the nucleoid occlusion protein Noc.
Mol.Cell, 81, 2021
7NG0
DownloadVisualize
BU of 7ng0 by Molmil
Crystal structure of N- and C-terminally truncated Geobacillus thermoleovorans nucleoid occlusion protein Noc
分子名称: Nucleoid occlusion protein, SULFATE ION
著者Jalal, A.S.B, Tran, N.T, Wu, L.J, Ramakrishnan, K, Rejzek, M, Stevenson, C.E.M, Lawson, D.M, Errington, J, Le, T.B.K.
登録日2021-02-08
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献CTP regulates membrane-binding activity of the nucleoid occlusion protein Noc.
Mol.Cell, 81, 2021
7DDP
DownloadVisualize
BU of 7ddp by Molmil
Cryo-EM structure of human ACE2 and GX/P2V/2017 RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ...
著者Niu, S, Wang, J, Wang, H.W, Qi, J.X, Wang, Q.H, Gao, G.F.
登録日2020-10-29
公開日2021-05-19
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular basis of cross-species ACE2 interactions with SARS-CoV-2-like viruses of pangolin origin.
Embo J., 40, 2021
6RQ7
DownloadVisualize
BU of 6rq7 by Molmil
Gadolinium MRI contrast compound binding in human plasma glycoprotein afamin - resurrection of highly anisotropic data
分子名称: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rupp, B, Bowler, M.W, Naschberger, A, Juyoux, P, vonVelsen, J.
登録日2019-05-15
公開日2019-07-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Controlled dehydration, structural flexibility and gadolinium MRI contrast compound binding in the human plasma glycoprotein afamin.
Acta Crystallogr D Struct Biol, 75, 2019
7DDO
DownloadVisualize
BU of 7ddo by Molmil
Cryo-EM structure of human ACE2 and GD/1/2019 RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ...
著者Niu, S, Wang, J, Wang, H.W, Qi, J.X, Wang, Q.H, Gao, G.F.
登録日2020-10-29
公開日2021-05-19
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular basis of cross-species ACE2 interactions with SARS-CoV-2-like viruses of pangolin origin.
Embo J., 40, 2021
1S1D
DownloadVisualize
BU of 1s1d by Molmil
Structure and protein design of human apyrase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
著者Dai, J, Liu, J, Deng, Y, Smith, T.M, Lu, M.
登録日2004-01-06
公開日2004-03-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and protein design of a human platelet function inhibitor.
Cell(Cambridge,Mass.), 116, 2004
6RRM
DownloadVisualize
BU of 6rrm by Molmil
Crystal structure of LdtMt2 from Mycobacterium tuberculosis bound to Ebselen
分子名称: 1,2-ETHANEDIOL, AMMONIUM ION, GLYCEROL, ...
著者Brem, J, Lohans, C, Schofield, C.
登録日2019-05-20
公開日2019-08-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Targeting the Mycobacterium tuberculosis transpeptidase LdtMt2with cysteine-reactive inhibitors including ebselen.
Chem.Commun.(Camb.), 55, 2019
4C4G
DownloadVisualize
BU of 4c4g by Molmil
Structure-based design of orally bioavailable pyrrolopyridine inhibitors of the mitotic kinase MPS1
分子名称: 1,2-ETHANEDIOL, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, DUAL SPECIFICITY PROTEIN KINASE TTK, ...
著者Naud, S, Westwood, I.M, Faisal, A, Sheldrake, P, Bavetsias, V, Atrash, B, Liu, M, Hayes, A, Schmitt, J, Wood, A, Choi, V, Boxall, K, Mak, G, Gurden, M, Valenti, M, de Haven Brandon, A, Henley, A, Baker, R, McAndrew, C, Matijssen, B, Burke, R, Eccles, S.A, Raynaud, F.I, Linardopoulos, S, van Montfort, R, Blagg, J.
登録日2013-09-05
公開日2013-12-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure-Based Design of Orally Bioavailable 1H-Pyrrolo[3, 2-C]Pyridine Inhibitors of the Mitotic Kinase Monopolar Spindle 1 (Mps1).
J.Med.Chem., 56, 2013

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon