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PDB: 42550 件
1SPQ
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BU of 1spq by Molmil
Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase
分子名称: DI(HYDROXYETHYL)ETHER, Triosephosphate isomerase
著者Kursula, I, Salin, M, Sun, J, Norledge, B.V, Haapalainen, A.M, Sampson, N.S, Wierenga, R.K.
登録日2004-03-17
公開日2004-08-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase
Protein Eng.Des.Sel., 17, 2004
3ILI
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BU of 3ili by Molmil
Crystal structure of E. coli HPPK(D95A)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-08-07
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and functional roles of residues D95 and D97 in E. coli HPPK
To be Published
3VTS
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BU of 3vts by Molmil
Crystal structure of a three finger toxin from snake venom
分子名称: Cytotoxin 1
著者Jobichen, C, Sivaraman, J.
登録日2012-06-06
公開日2012-11-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.426 Å)
主引用文献Identification and structural characterization of a new three-finger toxin hemachatoxin from Hemachatus haemachatus venom.
Plos One, 7, 2012
3ITM
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BU of 3itm by Molmil
Catalytic domain of hPDE2A
分子名称: ZINC ION, cGMP-dependent 3',5'-cyclic phosphodiesterase
著者Pandit, J.
登録日2009-08-28
公開日2009-10-27
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Mechanism for the allosteric regulation of phosphodiesterase 2A deduced from the X-ray structure of a near full-length construct.
Proc.Natl.Acad.Sci.USA, 106, 2009
1RAS
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BU of 1ras by Molmil
CRYSTAL STRUCTURE OF A FLUORESCENT DERIVATIVE OF RNASE A
分子名称: 5-(1-SULFONAPHTHYL)-ACETYLAMINO-ETHYLAMINE, RIBONUCLEASE A
著者Baudet-Nessler, S, Jullien, M, Crosio, M.-P, Janin, J.
登録日1993-03-02
公開日1993-10-31
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a fluorescent derivative of RNase A.
Biochemistry, 32, 1993
1NR5
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BU of 1nr5 by Molmil
Crystal structure of 3-dehydroquinate synthase (DHQS) in complex with ZN2+, NAD and carbaphosphonate
分子名称: 3-DEHYDROQUINATE SYNTHASE, CHLORIDE ION, COBALT (II) ION, ...
著者Nichols, C.E, Ren, J, Lamb, H.K, Hawkins, A.R, Stammers, D.K.
登録日2003-01-23
公開日2003-03-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Ligand-induced Conformational Changes and a Mechanism for Domain Closure in Aspergillus nidulans Dehydroquinate Synthase
J.MOL.BIOL., 327, 2003
1RAR
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BU of 1rar by Molmil
CRYSTAL STRUCTURE OF A FLUORESCENT DERIVATIVE OF RNASE A
分子名称: 5-(1-SULFONAPHTHYL)-ACETYLAMINO-ETHYLAMINE, CHLORIDE ION, RIBONUCLEASE A
著者Baudet-Nessler, S, Jullien, M, Crosio, M.-P, Janin, J.
登録日1993-03-02
公開日1993-10-31
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a fluorescent derivative of RNase A.
Biochemistry, 32, 1993
3IQ2
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BU of 3iq2 by Molmil
Human sorting nexin 7, phox homology (PX) domain
分子名称: GLYCEROL, SULFATE ION, Sorting nexin-7
著者Karlberg, T, Wisniewska, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kallas, A, Kotenyova, T, Kotzsch, A, Kraulis, P, Nielsen, T.K, Moche, M, Nordlund, P, Nyman, T, Persson, C, Roos, A.K, Schutz, P, Siponen, M.I, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Schuler, H, Structural Genomics Consortium (SGC)
登録日2009-08-19
公開日2009-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Human Sorting Nexin 7, Phox Homology (Px) Domain
To be Published
3IR3
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BU of 3ir3 by Molmil
Crystal structure of human 3-hydroxyacyl-thioester dehydratase 2 (HTD2)
分子名称: 3-hydroxyacyl-thioester dehydratase 2, MALONATE ION
著者Ugochukwu, E, Cocking, R, Burgess-Brown, N, Pilka, E, Muniz, J, Krojer, T, Chaikuad, A, Gileadi, O, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Kavanagh, K.L, Oppermann, U, Structural Genomics Consortium (SGC)
登録日2009-08-21
公開日2009-09-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal structure of human 3-hydroxyacyl-thioester dehydratase 2 (HTD2)
To be Published
3VP1
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BU of 3vp1 by Molmil
Crystal structure of human glutaminase in complex with L-glutamate and BPTES
分子名称: GLUTAMIC ACID, Glutaminase kidney isoform, mitochondrial, ...
著者Thangavelu, K, Sivaraman, J.
登録日2012-02-23
公開日2012-06-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the allosteric inhibitory mechanism of human kidney-type glutaminase (KGA) and its regulation by Raf-Mek-Erk signaling in cancer cell metabolism.
Proc.Natl.Acad.Sci.USA, 109, 2012
3IRK
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BU of 3irk by Molmil
Solution Structure of Heparin dp30
分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
著者Khan, S, Gor, J, Mulloy, B, Perkins, S.J.
登録日2009-08-24
公開日2009-11-03
最終更新日2024-02-21
実験手法SOLUTION SCATTERING
主引用文献Semi-rigid solution structures of heparin by constrained X-ray scattering modelling: new insight into heparin-protein complexes.
J.Mol.Biol., 395, 2010
3I70
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BU of 3i70 by Molmil
Long-wavelength structure of NtA
分子名称: Agrin
著者Stetefeld, J.
登録日2009-07-07
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An interdomain disulfide bridge links the NtA and first FS domain in agrin.
Protein Sci., 18, 2009
3I8V
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BU of 3i8v by Molmil
Crystal structure of human PDE4a with 4-(3-butoxy-4-methoxyphenyl)methyl-2-imidazolidone
分子名称: (4R)-4-(3-butoxy-4-methoxybenzyl)imidazolidin-2-one, COBALT (II) ION, GLYCEROL, ...
著者Cheng, R.K.Y, Crawley, L, Barker, J, Wood, M, Felicetti, B, Whittaker, M.
登録日2009-07-10
公開日2009-07-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of human PDE4a with 4-(3-butoxy-4-methoxyphenyl)methyl-2-imidazolidone
To be Published
3VYB
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BU of 3vyb by Molmil
Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/hmCG sequence
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
著者Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
登録日2012-09-22
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3W0H
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BU of 3w0h by Molmil
Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
分子名称: (2S)-3-{4-[4-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)heptan-4-yl]phenoxy}propane-1,2-diol, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
著者Shimizu, T, Asano, L, Kuwabara, N, Ito, I, Waku, T, Yanagisawa, J, Miyachi, H.
登録日2012-10-30
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
3I7X
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BU of 3i7x by Molmil
High pressure structure of I106A RNase A variant (0.35 GPa)
分子名称: CHLORIDE ION, Ribonuclease pancreatic
著者Lewinski, K, Kurpiewska, K, Dziubek, K, Katrusiak, A, Font, J, Ribo, M, Vilanova, M.
登録日2009-07-09
公開日2009-08-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural investigation of ribonuclease A conformational preferences using high pressure protein crystallography
Chem.Phys., 468, 2016
3VWS
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BU of 3vws by Molmil
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107
分子名称: 5-{[(4-chlorophenyl)sulfonyl]amino}-2-methyl-1-benzofuran-3-carboxylic acid, DI(HYDROXYETHYL)ETHER, Non-structural protein 5, ...
著者Noble, C.G, Lescar, J.
登録日2012-08-31
公開日2013-02-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Conformational flexibility of the Dengue virus RNA-dependent RNA polymerase revealed by a complex with an inhibitor
J.Virol., 87, 2013
3I8N
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BU of 3i8n by Molmil
A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.
分子名称: FORMIC ACID, uncharacterized protein VP2912
著者Tan, K, Tesar, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2009-07-09
公開日2009-09-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.145 Å)
主引用文献A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.
To be Published
3IH6
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BU of 3ih6 by Molmil
Crystal structure of putative zinc protease from Bordetella pertussis Tohama I
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Putative zinc protease
著者Chang, C, Chhor, G, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2009-07-29
公開日2009-08-18
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of putative zinc protease from Bordetella pertussis Tohama I
To be Published
4L5C
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BU of 4l5c by Molmil
Methylthioadenosine phosphorylase from Schistosoma mansoni in complex with adenine in space group P212121
分子名称: ADENINE, GLYCEROL, S-methyl-5'-thioadenosine phosphorylase
著者Torini, J.R, DeMarco, R, Brandao-Neto, J, Pereira, H.M.
登録日2013-06-10
公開日2014-06-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.075 Å)
主引用文献Crystal Structure of Schistosoma mansoni Adenosine Phosphorylase/5'-Methylthioadenosine Phosphorylase and Its Importance on Adenosine Salvage Pathway.
Plos Negl Trop Dis, 10, 2016
3W0G
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BU of 3w0g by Molmil
Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands
分子名称: (2S)-3-{4-[2-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)propan-2-yl]phenoxy}propane-1,2-diol, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
著者Shimizu, T, Asano, L, Kuwabara, N, Ito, I, Waku, T, Yanagisawa, J, Miyachi, H.
登録日2012-10-30
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
3IES
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BU of 3ies by Molmil
Firefly luciferase inhibitor complex
分子名称: 5'-O-[(R)-[({3-[5-(2-fluorophenyl)-1,2,4-oxadiazol-3-yl]phenyl}carbonyl)oxy](hydroxy)phosphoryl]adenosine, Luciferin 4-monooxygenase
著者Lovell, S, Battaile, K.P, Auld, D.S, Thorne, N, Lea, W.A, Maloney, D.J, Shen, M, Raj, G, Thomas, C.J, Simeonov, A, Hanzlik, R.P, Inglese, J.
登録日2009-07-23
公開日2010-02-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular basis for the high-affinity binding and stabilization of firefly luciferase by PTC124.
Proc.Natl.Acad.Sci.USA, 107, 2010
3VXX
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BU of 3vxx by Molmil
Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/5mCG sequence
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
著者Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
登録日2012-09-21
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3IG0
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crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 2.1 A resolution
分子名称: DNA gyrase subunit B
著者Piton, J, Aubry, A, Delarue, M, Mayer, C.
登録日2009-07-27
公開日2010-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
3VYQ
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Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3'), ...
著者Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
登録日2012-10-02
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.525 Å)
主引用文献Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013

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