Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 results

5OVI
DownloadVisualize
BU of 5ovi by Molmil
Ras guanine nucleotide exchange factor SOS1 (Rem-cdc25) in complex with small molecule inhibitor BAY-293 (compound 23)
Descriptor: 1,2-ETHANEDIOL, 6,7-dimethoxy-2-methyl-~{N}-[(1~{R})-1-[4-[2-(methylaminomethyl)phenyl]thiophen-2-yl]ethyl]quinazolin-4-amine, Son of sevenless homolog 1
Authors:Hillig, R.C, Sautier, B, Schroeder, J, Moosmayer, D, Hilpmann, A, Stegmann, C.M, Briem, H, Boemer, U, Weiske, J, Badock, V, Petersen, K, Kahmann, J, Wegener, D, Bohnke, N, Eis, K, Graham, K, Wortmann, L, von Nussbaum, F, Bader, B.
Deposit date:2017-08-28
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of potent SOS1 inhibitors that block RAS activation via disruption of the RAS-SOS1 interaction.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4C7K
DownloadVisualize
BU of 4c7k by Molmil
11b-Hydroxysteroid Dehydrogenase Type I in complex with inhibitor
Descriptor: 2-ethyl-N-[(1S,3R)-5-oxidanyl-2-adamantyl]-4-[(2R)-oxolan-2-yl]-1,3-thiazole-5-carboxamide, CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Goldberg, F.W, Dossetter, A.G, Scott, J.S, Robb, G.R, Boyd, S, Groombridge, S.D, Kemmitt, P.D, Sjogren, T, Morentin Gutierrez, P, de Schoolmeester, J, Swales, J.G, Turnbull, A.V, Wild, M.J.
Deposit date:2013-09-23
Release date:2014-03-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Optimization of Brain Penetrant 11Beta-Hydroxysteroid Dehydrogenase Type I Inhibitors and in Vivo Testing in Diet- Induced Obese Mice.
J.Med.Chem., 57, 2014
7KHP
DownloadVisualize
BU of 7khp by Molmil
Acyl-enzyme intermediate structure of SARS-CoV-2 Mpro in complex with its C-terminal autoprocessing sequence.
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Lee, J, Worrall, L.J, Paetzel, M, Strynadka, N.C.J.
Deposit date:2020-10-21
Release date:2020-10-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystallographic structure of wild-type SARS-CoV-2 main protease acyl-enzyme intermediate with physiological C-terminal autoprocessing site.
Nat Commun, 11, 2020
2ZOT
DownloadVisualize
BU of 2zot by Molmil
Crystal structure of human F-spondin reeler domain (fragment 1)
Descriptor: Spondin-1
Authors:Nagae, M, Nogi, T, Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
5CQA
DownloadVisualize
BU of 5cqa by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2B, N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide (SGC - Diamond I04-1 fragment screening)
To be published
5I1C
DownloadVisualize
BU of 5i1c by Molmil
CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV3-23/IGKV3-20
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FAB HEAVY CHAIN, ...
Authors:Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G.
Deposit date:2016-02-05
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural diversity in a human antibody germline library.
Mabs, 8, 2016
5I1M
DownloadVisualize
BU of 5i1m by Molmil
Yeast V-ATPase average of densities, a subunit segment
Descriptor: V-type proton ATPase subunit a, vacuolar isoform
Authors:Schep, D.G, Zhao, J, Rubinstein, J.L.
Deposit date:2016-02-05
Release date:2016-03-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
2ZR1
DownloadVisualize
BU of 2zr1 by Molmil
Agglutinin from Abrus Precatorius
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Agglutinin-1 chain A, Agglutinin-1 chain B
Authors:Cheng, J, Lu, T.H, Liu, C.L, Lin, J.Y.
Deposit date:2008-08-22
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A biophysical elucidation for less toxicity of Agglutinin than Abrin-a from the Seeds of Abrus Precatorius in consequence of crystal structure
J.Biomed.Sci., 17, 2010
2ZPK
DownloadVisualize
BU of 2zpk by Molmil
Crystal structure of P20.1 Fab fragment in complex with its antigen peptide
Descriptor: GLYCEROL, IgG1-lambda P20.1 Fab (heavy chain), IgG1-lambda P20.1 Fab (light chain), ...
Authors:Nogi, T, Sanagawa, T, Takagi, J.
Deposit date:2008-07-16
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification
Protein Sci., 17, 2008
8B9Z
DownloadVisualize
BU of 8b9z by Molmil
Drosophila melanogaster complex I in the Active state (Dm1)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Agip, A.A, Chung, I, Sanchez-Martinez, A, Whitworth, A.J, Hirst, J.
Deposit date:2022-10-10
Release date:2023-01-18
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Cryo-EM structures of mitochondrial respiratory complex I from Drosophila melanogaster.
Elife, 12, 2023
2ZV8
DownloadVisualize
BU of 2zv8 by Molmil
Lyn Tyrosine Kinase Domain-AMP-PNP complex
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Tyrosine-protein kinase Lyn
Authors:Williams, N.K, Rossjohn, J.
Deposit date:2008-11-04
Release date:2008-11-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of the Lyn Protein Tyrosine Kinase Domain in Its Apo- and Inhibitor-bound State
J.Biol.Chem., 284, 2009
8BG0
DownloadVisualize
BU of 8bg0 by Molmil
Amyloid-beta tetrameric filaments with the Arctic mutation (E22G) from Alzheimer's disease brains | ABeta40
Descriptor: Amyloid-beta precursor protein
Authors:Yang, Y, Zhang, W.J, Murzin, A.G, Schweighauser, M, Huang, M, Lovestam, S.K.A, Peak-Chew, S.Y, Macdonald, J, Lavenir, I, Ghetti, B, Graff, C, Kumar, A, Nordber, A, Goedert, M, Scheres, S.H.W.
Deposit date:2022-10-27
Release date:2023-01-18
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (1.99 Å)
Cite:Cryo-EM structures of amyloid-beta filaments with the Arctic mutation (E22G) from human and mouse brains.
Acta Neuropathol, 145, 2023
5CQ8
DownloadVisualize
BU of 5cq8 by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with 4'-Hydroxyacetophenone (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2B, P-HYDROXYACETOPHENONE
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with 4'-Hydroxyacetophenone (SGC - Diamond I04-1 fragment screening)
To be published
2ZVA
DownloadVisualize
BU of 2zva by Molmil
Lyn Tyrosine Kinase Domain-Dasatinib complex
Descriptor: N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE, Tyrosine-protein kinase Lyn
Authors:Williams, N.K, Rossjohn, J.
Deposit date:2008-11-04
Release date:2008-11-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of the Lyn Protein Tyrosine Kinase Domain in Its Apo- and Inhibitor-bound State
J.Biol.Chem., 284, 2009
7KJP
DownloadVisualize
BU of 7kjp by Molmil
Disulfide Stabilized Norovirus GI.1 VLP Shell Region
Descriptor: Capsid protein VP1
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-10-26
Release date:2020-12-02
Last modified:2020-12-30
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Disulfide stabilization of human norovirus GI.1 virus-like particles focuses immune response toward blockade epitopes.
NPJ Vaccines, 5, 2020
8KAB
DownloadVisualize
BU of 8kab by Molmil
Mycobacterium smegmatis 50S ribosomal subunit-HflX complex
Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Srinivasan, K, Banerjee, A, Sengupta, J.
Deposit date:2023-08-02
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria.
Structure, 2024
8BFZ
DownloadVisualize
BU of 8bfz by Molmil
Amyloid-beta 42 filaments extracted from the human brain with Arctic mutation (E22G) of Alzheimer's disease | ABeta42
Descriptor: Amyloid-beta precursor protein
Authors:Yang, Y, Zhang, W.J, Murzin, A.G, Schweighauser, M, Huang, M, Lovestam, S.K.A, Peak-Chew, S.Y, Macdonald, J, Lavenir, I, Ghetti, B, Graff, C, Kumar, A, Nordberg, A, Goedert, M, Scheres, S.H.W.
Deposit date:2022-10-27
Release date:2023-01-18
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures of amyloid-beta filaments with the Arctic mutation (E22G) from human and mouse brains.
Acta Neuropathol, 145, 2023
8K8M
DownloadVisualize
BU of 8k8m by Molmil
Crystallographic structure of Lysozyme C from chicken
Descriptor: GLYCEROL, Lysozyme C
Authors:Zheng, P, Shang, G, Jin, J, He, L.
Deposit date:2023-07-31
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic structure of Lysozyme C from chicken
To Be Published
5I1A
DownloadVisualize
BU of 5i1a by Molmil
CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV3-23/IGKV3-11
Descriptor: ACETATE ION, CNTO388 HEAVY CHAIN, CNTO388 LIGHT CHAIN, ...
Authors:Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G.
Deposit date:2016-02-05
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural diversity in a human antibody germline library.
Mabs, 8, 2016
8K60
DownloadVisualize
BU of 8k60 by Molmil
Cryo-EM structure of Streptomyces coelicolor transcription initiation complex with the global transcription factor AfsR
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Lin, W, Shi, J.
Deposit date:2023-07-24
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into transcription activation of the Streptomyces antibiotic regulatory protein, AfsR
Iscience, 27, 2024
1HJZ
DownloadVisualize
BU of 1hjz by Molmil
Crystal structure of AF1521 protein containing a macroH2A domain
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HYPOTHETICAL PROTEIN AF1521
Authors:Allen, M.D, Buckle, A.M, Cordell, S.C, Lowe, J, Bycroft, M.
Deposit date:2003-03-05
Release date:2003-07-10
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of Af1521 a Protein from Archaeoglobus Fulgidus with Homology to the Non-Histone Domain of Macroh2A
J.Mol.Biol., 330, 2003
8KB8
DownloadVisualize
BU of 8kb8 by Molmil
Structure of the WDR91 WD40 domain complexed with Rab7
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7a, ...
Authors:Li, J, Ma, X.L, Banerjee, S, Dong, Z.G.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of the WDR91 WD40 domain complexed with Rab7
To Be Published
5CQ7
DownloadVisualize
BU of 5cq7 by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with N,N-dimethylquinoxaline-6-carboxamide (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2B, N,N-dimethylquinoxaline-6-carboxamide
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with N,N-dimethylquinoxaline-6-carboxamide (SGC - Diamond I04-1 fragment screening)
To be published
5I68
DownloadVisualize
BU of 5i68 by Molmil
Alcohol oxidase from Pichia pastoris
Descriptor: Alcohol oxidase 1, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Vonck, J, Mills, D.J, Parcej, D.N.
Deposit date:2016-02-16
Release date:2016-08-03
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structure of Alcohol Oxidase from Pichia pastoris by Cryo-Electron Microscopy.
Plos One, 11, 2016
1USQ
DownloadVisualize
BU of 1usq by Molmil
Complex of E. Coli DraE adhesin with Chloramphenicol
Descriptor: 1,2-ETHANEDIOL, CHLORAMPHENICOL, DR HEMAGGLUTININ STRUCTURAL SUBUNIT, ...
Authors:Anderson, K.L, Billington, J, Pettigrew, D, Cota, E, Roversi, P, Simpson, P, Chen, H.A, Urvil, P, Dumerle, L, Barlow, P, Medof, E, Smith, R.A.G, Nowicki, B, Le Bouguenec, C, Lea, S.M, Matthews, S.
Deposit date:2003-11-27
Release date:2004-08-31
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High Resolution Studies of the Afa/Dr Adhesin Drae and its Interaction with Chloramphenicol
J.Biol.Chem., 279, 2004

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon