Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42391 results

4NW2
DownloadVisualize
BU of 4nw2 by Molmil
Tandem chromodomains of human CHD1 in complex with Influenza virus NS1 C-terminal tail trimethylated at K229
Descriptor: Chromodomain-helicase-DNA-binding protein 1, GLYCEROL, Nonstructural protein 1, ...
Authors:Qin, S, Tempel, W, Xu, C, El Bakkouri, M, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2013-12-05
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1.
Nat Commun, 5, 2014
1AM7
DownloadVisualize
BU of 1am7 by Molmil
Lysozyme from bacteriophage lambda
Descriptor: ISOPROPYL ALCOHOL, LYSOZYME
Authors:Evrard, C, Fastrez, J, Declercq, J.P.
Deposit date:1997-06-24
Release date:1997-12-24
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the lysozyme from bacteriophage lambda and its relationship with V and C-type lysozymes.
J.Mol.Biol., 276, 1998
4NN3
DownloadVisualize
BU of 4nn3 by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens (Desal_2161), Target EFI-510109, with bound orotic acid
Descriptor: CHLORIDE ION, OROTIC ACID, TRAP dicarboxylate transporter, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-11-16
Release date:2013-12-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
4NQ8
DownloadVisualize
BU of 4nq8 by Molmil
Crystal structure of a trap periplasmic solute binding protein from Bordetella bronchispeptica (bb3421), target EFI-510039, with density modeled as pantoate
Descriptor: CHLORIDE ION, PANTOATE, Putative periplasmic substrate-binding transport protein, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-11-24
Release date:2014-01-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
9XIM
DownloadVisualize
BU of 9xim by Molmil
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Descriptor: D-XYLOSE ISOMERASE, D-xylose, MANGANESE (II) ION
Authors:Janin, J.
Deposit date:1992-04-03
Release date:1993-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.
Biochemistry, 31, 1992
8XAI
DownloadVisualize
BU of 8xai by Molmil
Crystal structure of Protease CPAVM1 in Bacillus subtilis LjM2
Descriptor: Lipoprotein
Authors:Zhang, J, Wang, C.Y.
Deposit date:2023-12-04
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Anti-influenza activity of CPAVM1 protease secreted by Bacillus subtilis LjM2.
Antiviral Res., 228, 2024
4RL1
DownloadVisualize
BU of 4rl1 by Molmil
Structural and functional analysis of a loading acyltransferase from the avermectin modular polyketide synthase
Descriptor: Type I polyketide synthase AVES 1
Authors:Wang, F, Wang, Y, Zheng, J.
Deposit date:2014-10-15
Release date:2015-01-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional analysis of the loading acyltransferase from avermectin modular polyketide synthase.
Acs Chem.Biol., 10, 2015
8XIM
DownloadVisualize
BU of 8xim by Molmil
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Descriptor: D-XYLOSE ISOMERASE, D-xylose, MAGNESIUM ION
Authors:Janin, J.
Deposit date:1992-04-01
Release date:1993-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.
Biochemistry, 31, 1992
1A75
DownloadVisualize
BU of 1a75 by Molmil
WHITING PARVALBUMIN
Descriptor: CALCIUM ION, PARVALBUMIN
Authors:Declercq, J.P, Baneres, J.L, Rambaud, J, Parello, J.
Deposit date:1998-03-19
Release date:1998-06-17
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Tertiary Structure of a Trp-Containing Parvalbumin from Whiting (Merlangius Merlangus). Description of the Hydrophobic Core
To be Published
4U7Q
DownloadVisualize
BU of 4u7q by Molmil
Structure of wild-type HIV protease in complex with photosensitive inhibitor PDI-6
Descriptor: N~2~-({[7-(diethylamino)-2-oxo-2H-chromen-4-yl]methoxy}carbonyl)-N-[(2S,4S,5S)-4-hydroxy-1,6-diphenyl-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-L-valinamide, V-1 protease
Authors:Pachl, P, Rezacova, P, Schimer, J.
Deposit date:2014-07-31
Release date:2015-03-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor.
Nat Commun, 6, 2015
4U7V
DownloadVisualize
BU of 4u7v by Molmil
Structure of wild-type HIV protease in complex with degraded photosensitive inhibitor
Descriptor: BETA-MERCAPTOETHANOL, N-[(2S,4S,5S)-4-hydroxy-1,6-diphenyl-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-L-valinamide, V-1 protease
Authors:Pachl, P, Rezacova, P, Schimer, J.
Deposit date:2014-07-31
Release date:2015-03-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor.
Nat Commun, 6, 2015
4UOE
DownloadVisualize
BU of 4uoe by Molmil
Crystal Structure of Plasmodium Falciparum Spermidine Synthase in Complex with 5'-Deoxy-5'-Methylioadenosine and 4-Aminomethylaniline
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 4-(aminomethyl)aniline, 5'-DEOXY-5'-METHYLTHIOADENOSINE, ...
Authors:Sprenger, J, Halander, J.C, Svensson, B, Al-Karadaghi, S, Person, L.
Deposit date:2014-06-03
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Three-Dimensional Structures of Plasmodium Falciparum Spermidine Synthase with Bound Inhibitors Suggest New Strategies for Drug Design.
Acta Crystallogr.,Sect.D, 71, 2015
4V4B
DownloadVisualize
BU of 4v4b by Molmil
Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11, ...
Authors:Spahn, C.M, Gomez-Lorenzo, M.G, Grassucci, R.A, Jorgensen, R, Andersen, G.R, Beckmann, R, Penczek, P.A, Ballesta, J.P.G, Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
4V48
DownloadVisualize
BU of 4v48 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Descriptor: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1U0G
DownloadVisualize
BU of 1u0g by Molmil
Crystal structure of mouse phosphoglucose isomerase in complex with erythrose 4-phosphate
Descriptor: BETA-MERCAPTOETHANOL, ERYTHOSE-4-PHOSPHATE, GLYCEROL, ...
Authors:Solomons, J.T.G, Zimmerly, E.M, Burns, S, Krishnamurthy, N, Swan, M.K, Krings, S, Muirhead, H, Chirgwin, J, Davies, C.
Deposit date:2004-07-13
Release date:2004-11-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening.
J.Mol.Biol., 342, 2004
1U0F
DownloadVisualize
BU of 1u0f by Molmil
Crystal structure of mouse phosphoglucose isomerase in complex with glucose 6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, BETA-MERCAPTOETHANOL, GLUCOSE-6-PHOSPHATE, ...
Authors:Solomons, J.T.G, Zimmerly, E.M, Burns, S, Krishnamurthy, N, Swan, M.K, Krings, S, Muirhead, H, Chirgwin, J, Davies, C.
Deposit date:2004-07-13
Release date:2004-11-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening.
J.Mol.Biol., 342, 2004
1U4S
DownloadVisualize
BU of 1u4s by Molmil
Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedisulphonic acid
Descriptor: L-lactate dehydrogenase, NAPHTHALENE-2,6-DISULFONIC ACID
Authors:Conners, R, Cameron, A, Read, J, Schambach, F, Sessions, R.B, Brady, R.L.
Deposit date:2004-07-26
Release date:2005-06-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mapping the binding site for gossypol-like inhibitors of Plasmodium falciparum lactate dehydrogenase.
Mol.Biochem.Parasitol., 142, 2005
1UG8
DownloadVisualize
BU of 1ug8 by Molmil
NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
Descriptor: Poly(A)-specific Ribonuclease
Authors:Nagata, T, Muto, Y, Hayami, N, Uda, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-15
Release date:2004-08-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
To be Published
1TWS
DownloadVisualize
BU of 1tws by Molmil
Dihydropteroate Synthetase From Bacillus anthracis
Descriptor: DHPS, Dihydropteroate synthase, SULFATE ION
Authors:Babaoglu, K, Qi, J, Lee, R.E, White, S.W.
Deposit date:2004-07-01
Release date:2004-09-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design.
STRUCTURE, 12, 2004
1TX2
DownloadVisualize
BU of 1tx2 by Molmil
Dihydropteroate Synthetase, With Bound Inhibitor MANIC, From Bacillus anthracis
Descriptor: 6-METHYLAMINO-5-NITROISOCYTOSINE, DHPS, Dihydropteroate synthase, ...
Authors:Babaoglu, K, Qi, J, Lee, R.E, White, S.W.
Deposit date:2004-07-01
Release date:2004-09-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of 7,8-Dihydropteroate Synthase from Bacillus anthracis; Mechanism and Novel Inhibitor Design.
STRUCTURE, 12, 2004
4ELX
DownloadVisualize
BU of 4elx by Molmil
Structure of apo E.coli. 1,4-dihydroxy-2- naphthoyl CoA synthases with Cl
Descriptor: 1,2-ETHANEDIOL, 1,4-Dihydroxy-2-naphthoyl-CoA synthase, CHLORIDE ION, ...
Authors:Sun, Y.R, Song, H.G, Li, J, Jiang, M, Li, Y, Zhou, J.H, Guo, Z.H.
Deposit date:2012-04-11
Release date:2012-06-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:Active site binding and catalytic role of bicarbonate in 1,4-dihydroxy-2-naphthoyl coenzyme A synthases from vitamin K biosynthetic pathways
Biochemistry, 51, 2012
1UE4
DownloadVisualize
BU of 1ue4 by Molmil
Crystal structure of d(GCGAAAGC)
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', MAGNESIUM ION
Authors:Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2003-05-09
Release date:2004-03-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D, 60, 2004
1U0E
DownloadVisualize
BU of 1u0e by Molmil
Crystal structure of mouse phosphoglucose isomerase
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Glucose-6-phosphate isomerase, ...
Authors:Solomons, J.T.G, Zimmerly, E.M, Burns, S, Krishnamurthy, N, Swan, M.K, Krings, S, Muirhead, H, Chirgwin, J, Davies, C.
Deposit date:2004-07-13
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of mouse phosphoglucose isomerase at 1.6A resolution and its complex with glucose 6-phosphate reveals the catalytic mechanism of sugar ring opening.
J.Mol.Biol., 342, 2004
8WA2
DownloadVisualize
BU of 8wa2 by Molmil
cryo-EM structure of native mastigonemes isolated from Chlamydomonas reinhardtii at 3.0 angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Huang, J, Tao, H, Chen, J, Pan, J, Yan, C, Yan, N.
Deposit date:2023-09-06
Release date:2024-04-10
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure-guided discovery of protein and glycan components in native mastigonemes.
Cell, 187, 2024
1U0V
DownloadVisualize
BU of 1u0v by Molmil
An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization of Specificity of Type III Polyketide Synthases: 18xCHS structure
Descriptor: Chalcone synthase 2
Authors:Austin, M.B, Bowman, M.E, Ferrer, J.-L, Schroder, J, Noel, J.P.
Deposit date:2004-07-14
Release date:2004-10-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases
Chem.Biol., 11, 2004

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon