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PDB: 18 件
8JX3
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alpha-Hemolysin(G122S/K147R/K237C)-SpyTag/SpyCatcher head to head 14-mer
分子名称: alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag
著者Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T.
登録日2023-06-30
公開日2024-07-03
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
To Be Published
8JX2
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alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
分子名称: alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag
著者Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T.
登録日2023-06-30
公開日2024-07-03
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer
To Be Published
8J47
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CryoEM Structure of 40-Residue Arctic (E22G) Beta-Amyloid Fibril Derived by Co-Analysis with Solid-State NMR | E22G Abeta40
分子名称: E22G Amyloid-beta
著者Tehrani, M.J, Matsuda, I, Yamagata, A, Matsunaga, T, Sato, M, Toyooka, K, Shirouzu, M, Ishii, Y, Kodama, Y, McElheny, D, Kobayashi, N.
登録日2023-04-19
公開日2024-09-11
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献E22G A beta 40 fibril structure and kinetics illuminate how A beta 40 rather than A beta 42 triggers familial Alzheimer's.
Nat Commun, 15, 2024
2MXU
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42-Residue Beta Amyloid Fibril
分子名称: Amyloid beta A4 protein
著者Xiao, Y, Ma, B, McElheny, D, Parthasarathy, S, Long, F, Hoshi, M, Nussinov, R, Ishii, Y.
登録日2015-01-14
公開日2015-05-06
最終更新日2024-05-01
実験手法SOLID-STATE NMR
主引用文献A beta (1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.
Nat.Struct.Mol.Biol., 22, 2015
6BN3
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CTX-M-151 class A extended-spectrum beta-lactamase apo crystal structure at 1.3 Angstrom resolution
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-lactamase
著者Power, P, Ghiglione, B, Rodriguez, M.M, Gutkind, G, Ishii, Y, Bonomo, R.A, Klinke, S.
登録日2017-11-16
公開日2018-11-21
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.278 Å)
主引用文献Structural and Biochemical Characterization of the Novel CTX-M-151 Extended-Spectrum beta-Lactamase and Its Inhibition by Avibactam.
Antimicrob.Agents Chemother., 65, 2021
6BPF
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CTX-M-151 class A extended-spectrum beta-lactamase crystal structure in complex with avibactam at 1.32 Angstrom resolution
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase
著者Power, P, Ghiglione, B, Rodriguez, M.M, Gutkind, G, Ishii, Y, Bonomo, R.A, Klinke, S.
登録日2017-11-23
公開日2018-11-28
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.318 Å)
主引用文献Structural and Biochemical Characterization of the Novel CTX-M-151 Extended-Spectrum beta-Lactamase and Its Inhibition by Avibactam.
Antimicrob.Agents Chemother., 65, 2021
4WBG
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Crystal structure of class C beta-lactamase Mox-1 covalently complexed with aztorenam
分子名称: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, ACETATE ION, Beta-lactamase, ...
著者Oguri, T, Shimizu-ibuka, A, Ishii, Y.
登録日2014-09-03
公開日2015-07-01
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conformational Change Observed in the Active Site of Class C beta-Lactamase MOX-1 upon Binding to Aztreonam
Antimicrob.Agents Chemother., 59, 2015
1BZA
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BETA-LACTAMASE TOHO-1 FROM ESCHERICHIA COLI TUH12191
分子名称: BETA-LACTAMASE, SULFATE ION
著者Ibuka, A, Taguchi, A, Ishiguro, M, Fushinobu, S, Ishii, Y, Kamitori, S, Okuyama, K, Yamaguchi, K, Konno, M, Matsuzawa, H.
登録日1998-10-28
公開日1999-04-27
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution.
J.Mol.Biol., 285, 1999
1IYS
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Crystal Structure of Class A beta-Lactamase Toho-1
分子名称: BETA-LACTAMASE TOHO-1, SULFATE ION
著者Ibuka, A.S, Ishii, Y, Yamaguchi, K, Matsuzawa, H, Sakai, H.
登録日2002-09-06
公開日2003-10-14
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal Structure of Extended-Spectrum beta-Lactamase Toho-1: Insights into the Molecular Mechanism for Catalytic Reaction and Substrate Specificity Expansion
Biochemistry, 42, 2003
1IYQ
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Toho-1 beta-Lactamase In Complex With Benzylpenicillin
分子名称: OPEN FORM - PENICILLIN G, SULFATE ION, Toho-1 beta-lactamase
著者Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
登録日2002-09-04
公開日2002-12-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
1IYP
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Toho-1 beta-Lactamase In Complex With Cephalothin
分子名称: CEPHALOTHIN GROUP, SULFATE ION, Toho-1 beta-lactamase
著者Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
登録日2002-09-04
公開日2002-12-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
1IYO
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Toho-1 beta-Lactamase In Complex With Cefotaxime
分子名称: CEFOTAXIME, C3' cleaved, open, ...
著者Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
登録日2002-09-04
公開日2002-12-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
5B3R
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Crystal structure of metallo-beta-lactamase IMP-18 from Pseudomonas aeruginosa
分子名称: CITRIC ACID, IMP-18, ZINC ION
著者Shimizu-Ibuka, A, Ishii, Y.
登録日2016-03-10
公開日2017-02-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Mutagenic Analysis of Metallo-beta-Lactamase IMP-18
Antimicrob. Agents Chemother., 60, 2016
2ZQD
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Ceftazidime acyl-intermediate structure of class a beta-lact Toho-1 E166A/R274N/R276N triple mutant
分子名称: ACYLATED CEFTAZIDIME, Beta-lactamase Toho-1, SULFATE ION
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQ9
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Cephalothin acyl-intermediate structure of class a beta-lactamase Toho-1 E166A/R274N/R276N triple mutant
分子名称: 5-METHYLENE-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-5,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, Beta-lactamase Toho-1, CEPHALOTHIN, ...
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQC
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Aztreonam acyl-intermediate structure of class a beta-lactam Toho-1 E166A/R274N/R276N triple mutant
分子名称: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, Beta-lactamase Toho-1, SULFATE ION
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQA
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Cefotaxime acyl-intermediate structure of class a beta-lacta Toho-1 E166A/R274N/R276N triple mutant
分子名称: Beta-lactamase Toho-1, CEFOTAXIME, C3' cleaved, ...
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
3W8K
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Crystal structure of class C beta-lactamase Mox-1
分子名称: ACETATE ION, Beta-lactamase, ZINC ION
著者Shimizu-ibuka, A, Oguri, T, Furuyama, T, Ishii, Y.
登録日2013-03-15
公開日2014-04-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Mox-1, a unique plasmid-mediated class C beta-lactamase with hydrolytic activity towards moxalactam
Antimicrob.Agents Chemother., 58, 2014

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