2K6Q
| LC3 p62 complex structure | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B, p62_peptide from Sequestosome-1 | Authors: | Noda, N, Kumeta, H, Nakatogawa, H, Satoo, K, Adachi, W, Ishii, J, Fujioka, Y, Ohsumi, Y, Inagaki, F. | Deposit date: | 2008-07-17 | Release date: | 2008-09-02 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis of target recognition by ATG8/LC3 during selective autophagy To be Published
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2KFK
| Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain | Descriptor: | Bud emergence protein 1, Cell division control protein 24 | Authors: | Kobashigawa, Y, Yoshinaga, S, Tandai, T, Ogura, K, Inagaki, F. | Deposit date: | 2009-02-23 | Release date: | 2009-10-06 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae J.Biochem., 146, 2009
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2KKC
| NMR structure of the p62 PB1 domain | Descriptor: | Sequestosome-1 | Authors: | Yokochi, M, Inagaki, F. | Deposit date: | 2009-06-18 | Release date: | 2009-09-15 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway J.Biomol.Nmr, 45, 2009
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2KTR
| NMR structure of p62 PB1 dimer determined based on PCS | Descriptor: | Sequestosome-1, TERBIUM(III) ION | Authors: | Saio, T, Yokochi, M, Kumeta, H, Inagaki, F. | Deposit date: | 2010-02-05 | Release date: | 2010-04-07 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | PCS-based structure determination of protein-protein complexes J.Biomol.Nmr, 46, 2010
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2KWC
| The NMR structure of the autophagy-related protein Atg8 | Descriptor: | Autophagy-related protein 8 | Authors: | Kumeta, H, Watanabe, M, Nakatogawa, H, Yamaguchi, M, Ogura, K, Adachi, W, Fujioka, Y, Noda, N.N, Ohsumi, Y, Inagaki, F. | Deposit date: | 2010-04-05 | Release date: | 2010-05-12 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The NMR structure of the autophagy-related protein Atg8 J.Biomol.Nmr, 47, 2010
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2KSV
| The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum | Descriptor: | Protein-glutaminase | Authors: | Kumeta, H, Miwa, N, Ogura, K, Kai, Y, Mizukoshi, T, Shimba, N, Suzuki, E, Inagaki, F. | Deposit date: | 2010-01-14 | Release date: | 2010-02-16 | Last modified: | 2022-03-16 | Method: | SOLUTION NMR | Cite: | The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum. J.Biomol.Nmr, 46, 2010
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2KZB
| Solution structure of alpha-mannosidase binding domain of Atg19 | Descriptor: | Autophagy-related protein 19 | Authors: | Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F. | Deposit date: | 2010-06-15 | Release date: | 2010-07-21 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34. J.Biol.Chem., 285, 2010
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2KBT
| Attachment of an NMR-invisible solubility enhancement tag (INSET) using a sortase-mediated protein ligation method | Descriptor: | Proto-oncogene vav,Immunoglobulin G-binding protein G | Authors: | Kumeta, H, Kobashigawa, Y, Ogura, K, Inagaki, F. | Deposit date: | 2008-12-07 | Release date: | 2009-02-03 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method J.Biomol.Nmr, 43, 2009
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2LPU
| Solution structures of KmAtg10 | Descriptor: | KmAtg10 | Authors: | Yamaguchi, M, Noda, N.N, Yamamoto, H, Shima, T, Kumeta, H, Kobashigawa, Y, Akada, R, Ohsumi, Y, Inagaki, F. | Deposit date: | 2012-02-19 | Release date: | 2012-08-01 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate Structure, 20, 2012
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2KZK
| Solution structure of alpha-mannosidase binding domain of Atg34 | Descriptor: | Uncharacterized protein YOL083W | Authors: | Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F. | Deposit date: | 2010-06-18 | Release date: | 2010-07-21 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34. J.Biol.Chem., 285, 2010
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2LDR
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2LI5
| NMR structure of Atg8-Atg7C30 complex | Descriptor: | Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7 | Authors: | Kumeta, H, Satoo, K, Noda, N.N, Fujioka, Y, Ogura, K, Nakatogawa, H, Ohsumi, Y, Inagaki, F. | Deposit date: | 2011-08-23 | Release date: | 2011-11-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis of Atg8 activation by a homodimeric E1, Atg7. Mol.Cell, 44, 2011
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2LHH
| Solution structure of Ca2+-bound yCaM | Descriptor: | CALCIUM ION, Calmodulin | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | Deposit date: | 2011-08-10 | Release date: | 2012-08-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
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2LHI
| Solution structure of Ca2+/CNA1 peptide-bound yCaM | Descriptor: | CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1 | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | Deposit date: | 2011-08-10 | Release date: | 2012-08-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
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2M63
| The protease-resistant N-terminal domain of TIR-domain containing adaptor molecule-1, TICAM-1 | Descriptor: | TIR domain-containing adapter molecule 1 | Authors: | Kumeta, H, Enokizono, Y, Sakakibara, H, Ogura, K, Matsumoto, M, Seya, T, Inagaki, F. | Deposit date: | 2013-03-20 | Release date: | 2014-03-05 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1. J.Biomol.Nmr, 58, 2014
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2M1X
| TICAM-1 TIR domain structure | Descriptor: | TIR domain-containing adapter molecule 1 | Authors: | Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F. | Deposit date: | 2012-12-07 | Release date: | 2014-01-15 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling. Proc.Natl.Acad.Sci.USA, 110, 2013
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2LX2
| 1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout | Descriptor: | Type III antifreeze protein nfeAFP11 | Authors: | Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S. | Deposit date: | 2012-08-12 | Release date: | 2013-07-24 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner J.Biomol.Nmr, 55, 2013
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2LX3
| 1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout | Descriptor: | Type III antifreeze protein nfeAFP11 | Authors: | Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S. | Deposit date: | 2012-08-12 | Release date: | 2013-07-24 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner J.Biomol.Nmr, 55, 2013
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2M1W
| TICAM-2 TIR domain | Descriptor: | TIR domain-containing adapter molecule 2 | Authors: | Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F. | Deposit date: | 2012-12-07 | Release date: | 2014-01-15 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling. Proc.Natl.Acad.Sci.USA, 110, 2013
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2N9J
| Solution structure of oxidized human cytochrome c | Descriptor: | Cytochrome c, HEME C | Authors: | Imai, M, Saio, T, Kumeta, H, Uchida, T, Inagaki, F, Ishimori, K. | Deposit date: | 2015-11-24 | Release date: | 2016-02-17 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c. Biochem.Biophys.Res.Commun., 469, 2016
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2N5L
| Regnase-1 C-terminal domain | Descriptor: | Ribonuclease ZC3H12A | Authors: | Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F. | Deposit date: | 2015-07-18 | Release date: | 2016-03-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions Sci Rep, 6, 2016
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2N5J
| Regnase-1 N-terminal domain | Descriptor: | Ribonuclease ZC3H12A | Authors: | Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F. | Deposit date: | 2015-07-18 | Release date: | 2016-03-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions Sci Rep, 6, 2016
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3VGP
| Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from Archaeoglobus fulgidus | Descriptor: | Transmembrane oligosaccharyl transferase, putative | Authors: | Matsumoto, S, Igura, M, Nyirenda, J, Yuzawa, S, Noda, N.N, Inagaki, F, Kohda, D. | Deposit date: | 2011-08-18 | Release date: | 2012-07-04 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 A Resolution Biochemistry, 51, 2012
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3VH3
| Crystal structure of Atg7CTD-Atg8 complex | Descriptor: | Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION | Authors: | Noda, N.N, Satoo, K, Inagaki, F. | Deposit date: | 2011-08-23 | Release date: | 2011-09-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis of Atg8 activation by a homodimeric E1, Atg7. Mol.Cell, 44, 2011
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3VH4
| Crystal structure of Atg7CTD-Atg8-MgATP complex | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ... | Authors: | Noda, N.N, Satoo, K, Inagaki, F. | Deposit date: | 2011-08-23 | Release date: | 2011-09-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Structural basis of Atg8 activation by a homodimeric E1, Atg7. Mol.Cell, 44, 2011
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