3VH1

Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)

Summary for 3VH1

Related3VH2 3VH3 3VH4
DescriptorUbiquitin-like modifier-activating enzyme ATG7, ZINC ION (3 entities in total)
Functional Keywordsautophagy, e1, zinc binding, metal binding protein
Biological sourceSaccharomyces cerevisiae (Baker's yeast)
Cellular locationCytoplasm P38862
Total number of polymer chains1
Total molecular weight67881.82
Authors
Noda, N.N.,Satoo, K.,Inagaki, F. (deposition date: 2011-08-23, release date: 2011-09-21, Last modification date: 2012-03-28)
Primary citation
Noda, N.N.,Satoo, K.,Fujioka, Y.,Kumeta, H.,Ogura, K.,Nakatogawa, H.,Ohsumi, Y.,Inagaki, F.
Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44:462-475, 2011
PubMed: 22055191 (PDB entries with the same primary citation)
DOI: 10.1016/j.molcel.2011.08.035
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.250190.9%8.4%0MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3vh1
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Molmil generated image of 3vh1
rotated about x axis by 90°
Molmil generated image of 3vh1
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 3vh1
no rotation
Molmil generated image of 3vh1
rotated about x axis by 90°
Molmil generated image of 3vh1
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3vh1.pdb1.gz [183.9 KB])