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PDB: 17892 results

6XC4
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BU of 6xc4 by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 heavy chain, CC12.3 light chain, ...
Authors:Yuan, M, Liu, H, Wu, N.C, Zhu, X, Wilson, I.A.
Deposit date:2020-06-08
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.341 Å)
Cite:Structural basis of a shared antibody response to SARS-CoV-2.
Science, 369, 2020
1A8H
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BU of 1a8h by Molmil
METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor: METHIONYL-TRNA SYNTHETASE, ZINC ION
Authors:Sugiura, I, Nureki, O, Ugaji, Y, Kuwabara, S, Lober, B, Giege, R, Moras, D, Yokoyama, S, Konno, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-03-26
Release date:1999-05-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules.
Structure, 8, 2000
7UFI
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BU of 7ufi by Molmil
VchTnsC AAA+ ATPase with DNA, single heptamer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*TP*CP*CP*AP*GP*TP*AP*CP*AP*GP*CP*GP*CP*GP*GP*CP*TP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*AP*GP*CP*CP*GP*CP*GP*CP*TP*GP*TP*AP*CP*TP*GP*GP*AP*G)-3'), ...
Authors:Fernandez, I.S, Sternberg, S.H.
Deposit date:2022-03-22
Release date:2022-06-08
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Selective TnsC recruitment enhances the fidelity of RNA-guided transposition.
Nature, 609, 2022
5L8I
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BU of 5l8i by Molmil
crystal structure of human FABP6 apo-protein
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, DI(HYDROXYETHYL)ETHER, Gastrotropin, ...
Authors:Hendrick, A, Mueller, I, Leonard, P.M, Davenport, R, Mitchell, P.
Deposit date:2016-06-08
Release date:2016-08-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Identification and Investigation of Novel Binding Fragments in the Fatty Acid Binding Protein 6 (FABP6).
J.Med.Chem., 59, 2016
8ELQ
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BU of 8elq by Molmil
Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with antibody CC12.1 Fab and nanobody Nb-C4-255
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.1 Fab heavy chain, CC12.1 Fab light chain, ...
Authors:Liu, H, Wilson, I.A.
Deposit date:2022-09-26
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
5L8N
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crystal structure of human FABP6 protein with fragment 1
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 5,6-dimethyl-1~{H}-benzimidazol-2-amine, DI(HYDROXYETHYL)ETHER, ...
Authors:Hendrick, A, Mueller, I, Leonard, P.M, Davenport, R, Mitchell, P.
Deposit date:2016-06-08
Release date:2016-08-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Identification and Investigation of Novel Binding Fragments in the Fatty Acid Binding Protein 6 (FABP6).
J.Med.Chem., 59, 2016
5AY4
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BU of 5ay4 by Molmil
Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II)
Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SODIUM ION
Authors:Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A.
Deposit date:2015-08-06
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs
Angew.Chem.Int.Ed.Engl., 54, 2015
6YUE
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BU of 6yue by Molmil
Fragment of nitrate/nitrite sensor histidine kinase NarQ (R50S variant)
Descriptor: Nitrate/nitrite sensor protein NarQ
Authors:Gushchin, I, Melnikov, I, Polovinkin, V, Yuzhakova, A, Gordeliy, V.
Deposit date:2020-04-27
Release date:2020-05-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sensor Histidine Kinase NarQ Activates via Helical Rotation, Diagonal Scissoring, and Eventually Piston-Like Shifts.
Int J Mol Sci, 21, 2020
6YUL
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BU of 6yul by Molmil
CK2 alpha bound to Macrocycle
Descriptor: 7,10-Dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene-5-carboxylic acid, Casein kinase II subunit alpha, SULFATE ION
Authors:Kraemer, A, Hanke, T, Kurz, C, Celik, I, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-27
Release date:2020-07-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Optimization of pyrazolo[1,5-a]pyrimidines lead to the identification of a highly selective casein kinase 2 inhibitor.
Eur.J.Med.Chem., 208, 2020
4U8L
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BU of 4u8l by Molmil
Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant N207A
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014
8OR3
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BU of 8or3 by Molmil
CAND1-CUL1-RBX1-SKP1-SKP2-DCNL1
Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, DCN1-like protein 1, ...
Authors:Shaaban, M, Clapperton, J.A, Ding, S, Maeots, M.E, Enchev, R.I.
Deposit date:2023-04-13
Release date:2023-06-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange.
Mol.Cell, 83, 2023
8OR0
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BU of 8or0 by Molmil
CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2
Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, Cyclin-dependent kinase 2, ...
Authors:Shaaban, M, Clapperton, J.A, Ding, S, Maeots, M.E, Enchev, R.I.
Deposit date:2023-04-12
Release date:2023-06-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange.
Mol.Cell, 83, 2023
2RNB
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BU of 2rnb by Molmil
Solution structure of human Cu(I)Cox17
Descriptor: COPPER (I) ION, Cytochrome c oxidase copper chaperone
Authors:Banci, L, Bertini, I, Ciofi-Baffoni, S, Janicka, A, Martinelli, M, Kozlowski, H, Palumaa, P.
Deposit date:2007-12-08
Release date:2007-12-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A structural-dynamical characterization of human cox17
J.Biol.Chem., 283, 2008
7BVR
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BU of 7bvr by Molmil
DgpB-DgpC complex apo
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
Authors:Mori, T, He, H, Abe, I.
Deposit date:2020-04-11
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
5IZD
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BU of 5izd by Molmil
Wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP
Descriptor: D-glyceraldehyde dehydrogenase (NADP(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Iermak, I, Mesters, J.R, Kuta Smatanova, I.
Deposit date:2016-03-25
Release date:2017-04-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP
To Be Published
1A1X
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BU of 1a1x by Molmil
CRYSTAL STRUCTURE OF MTCP-1 INVOLVED IN T CELL MALIGNANCIES
Descriptor: HMTCP-1
Authors:Fu, Z.Q, Dubois, G.C, Song, S.P, Kulikovskaya, I, Virgilio, L, Rothstein, J, Croce, C.M, Weber, I.T, Harrison, R.W.
Deposit date:1997-12-18
Release date:1998-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of MTCP-1: implications for role of TCL-1 and MTCP-1 in T cell malignancies.
Proc.Natl.Acad.Sci.USA, 95, 1998
1A5Z
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BU of 1a5z by Molmil
LACTATE DEHYDROGENASE FROM THERMOTOGA MARITIMA (TMLDH)
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, CADMIUM ION, L-LACTATE DEHYDROGENASE, ...
Authors:Auerbach, G, Ostendorp, R, Prade, L, Korndoerfer, I, Dams, T, Huber, R, Jaenicke, R.
Deposit date:1998-02-18
Release date:1999-03-23
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Lactate dehydrogenase from the hyperthermophilic bacterium thermotoga maritima: the crystal structure at 2.1 A resolution reveals strategies for intrinsic protein stabilization.
Structure, 6, 1998
4U8N
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BU of 4u8n by Molmil
Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant F66A complexed with UDP
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014
5J3N
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BU of 5j3n by Molmil
C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin
Descriptor: Green fluorescent protein,HsdR
Authors:Grinkevich, P, Iermak, I, Luedtke, N, Mesters, J.R, Ettrich, R, Ludwig, J.
Deposit date:2016-03-31
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.
J. Biol. Chem., 293, 2018
6YUM
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BU of 6yum by Molmil
CK2 alpha bound to unclosed Macrocycle
Descriptor: 4-[5-[2-(2-hydroxyethyloxy)ethyl-[(2-methylpropan-2-yl)oxycarbonyl]amino]pyrazolo[1,5-a]pyrimidin-3-yl]-2-oxidanyl-benzoic acid, Casein kinase II subunit alpha, SULFATE ION
Authors:Kraemer, A, Hanke, T, Kurz, C, Celik, I, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-27
Release date:2020-07-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Optimization of pyrazolo[1,5-a]pyrimidines lead to the identification of a highly selective casein kinase 2 inhibitor.
Eur.J.Med.Chem., 208, 2020
7W1D
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BU of 7w1d by Molmil
Crystal structure of Klebsiella pneumoniae K1 capsule-specific polysaccharide lyase in a C2 crystal form
Descriptor: CARBONATE ION, CITRIC ACID, K1 LYASE
Authors:Tu, I.F, Ko, T.P, Huang, K.F, Wu, S.H.
Deposit date:2021-11-19
Release date:2022-05-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Structural and biological insights into Klebsiella pneumoniae surface polysaccharide degradation by a bacteriophage K1 lyase: implications for clinical use.
J.Biomed.Sci., 29, 2022
6CHT
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BU of 6cht by Molmil
HNF4alpha in complex with the corepressor EBP1 fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, LAURIC ACID, Proliferation-associated protein 2G4
Authors:Chi, Y.I, Singh, P, Lee, I.K.
Deposit date:2018-02-22
Release date:2019-02-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.174 Å)
Cite:ErbB3-binding protein 1 (EBP1) represses HNF4 alpha-mediated transcription and insulin secretion in pancreatic beta-cells.
J.Biol.Chem., 294, 2019
4U8K
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BU of 4u8k by Molmil
Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant Q107A
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014
4U8J
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BU of 4u8j by Molmil
Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant Y104A
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014
4U8M
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Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant Y317A
Descriptor: 1,2-ETHANEDIOL, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Qureshi, I.A, Chaudhary, R, Tanner, J.J.
Deposit date:2014-08-03
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics.
Biochemistry, 53, 2014

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